Wall clock time and date at job start Wed Apr 1 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99938 * 269.72489 * 16 15 14 18 18 C 1.38235 * 119.99796 * 179.78393 * 17 16 15 19 19 C 1.38240 * 120.00038 * 0.44844 * 18 17 16 20 20 C 1.50699 * 119.99877 * 179.83077 * 19 18 17 21 21 N 1.46498 * 109.47350 * 269.97385 * 20 19 18 22 22 C 1.34764 * 124.17554 * 89.99628 * 21 20 19 23 23 O 1.21231 * 127.16298 * 359.93698 * 22 21 20 24 24 C 1.51587 * 105.68543 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59112 * 0.02562 * 24 22 21 26 26 C 1.33789 * 124.17945 * 269.70412 * 21 20 19 27 27 O 1.21543 * 123.76772 * 0.03015 * 26 21 20 28 28 C 1.38231 * 120.00144 * 359.80274 * 19 18 17 29 29 C 1.38234 * 120.00015 * 89.99457 * 16 15 14 30 30 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 32 32 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 33 33 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 34 34 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 35 35 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 36 36 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 37 37 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 38 38 H 1.00901 * 110.99900 * 303.95543 * 14 13 2 39 39 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 40 40 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 41 41 H 1.07998 * 120.00155 * 0.02562 * 17 16 15 42 42 H 1.08004 * 119.99944 * 180.26960 * 18 17 16 43 43 H 1.09003 * 109.47196 * 29.97348 * 20 19 18 44 44 H 1.08994 * 109.47223 * 149.97286 * 20 19 18 45 45 H 1.09002 * 110.59369 * 118.52728 * 24 22 21 46 46 H 1.08990 * 110.60233 * 241.47924 * 24 22 21 47 47 H 0.96995 * 126.69158 * 180.02562 * 25 24 22 48 48 H 1.07993 * 120.00392 * 180.02562 * 28 19 18 49 49 H 1.08002 * 120.00278 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 6 0.4962 -0.0757 -5.4861 18 6 0.1118 0.6658 -6.5875 19 6 0.9432 1.6547 -7.0794 20 6 0.5257 2.4605 -8.2825 21 7 0.9983 1.7991 -9.5013 22 6 0.2902 0.8802 -10.1871 23 8 -0.8155 0.4600 -9.9215 24 6 1.1643 0.4804 -11.3593 25 7 2.3775 1.2968 -11.1806 26 6 2.1838 2.0367 -10.0740 27 8 2.9966 2.8297 -9.6407 28 6 2.1571 1.9048 -6.4674 29 6 2.5396 1.1662 -5.3632 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 3.1262 -0.7995 1.2057 34 1 1.6053 -1.7197 1.2952 35 1 1.9007 -0.0402 5.6795 36 1 3.1263 -0.7995 -1.2055 37 1 1.6054 -1.7198 -1.2951 38 1 0.6529 0.1793 -2.4753 39 1 3.2117 -0.7051 -3.6404 40 1 1.6905 -1.6250 -3.7296 41 1 -0.1518 -0.8505 -5.1038 42 1 -0.8368 0.4707 -7.0656 43 1 -0.5613 2.5374 -8.3090 44 1 0.9590 3.4586 -8.2195 45 1 1.4065 -0.5813 -11.3123 46 1 0.6748 0.7218 -12.3026 47 1 3.1612 1.3029 -11.7521 48 1 2.8064 2.6776 -6.8514 49 1 3.4880 1.3617 -4.8850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877716782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:43 Heat of formation + Delta-G solvation = -51.304285 kcal Electronic energy + Delta-G solvation = -28841.102029 eV Core-core repulsion = 24767.342006 eV Total energy + Delta-G solvation = -4073.760022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.30831 -40.47350 -39.62139 -38.44833 -37.15345 -36.44270 -35.42159 -34.14353 -32.41717 -31.89782 -29.72825 -28.88239 -28.25986 -26.79780 -25.15343 -24.09667 -23.57739 -23.37732 -22.19719 -21.21686 -20.64862 -19.05564 -18.96633 -18.30812 -17.73988 -17.39563 -16.80382 -16.51835 -16.45638 -16.24445 -16.17708 -15.92485 -15.70203 -15.25868 -15.17209 -14.98800 -14.84164 -14.52573 -14.34633 -14.24997 -13.87766 -13.67522 -13.44274 -13.39821 -13.26844 -12.96134 -12.77814 -12.51974 -12.29051 -12.11712 -12.08992 -11.89826 -11.71408 -11.47380 -11.32065 -11.20227 -11.05875 -10.91080 -10.73492 -10.40213 -9.88016 -9.74886 -9.30991 -8.25706 -6.28213 0.13443 0.45328 0.64338 1.32001 1.35708 1.38073 1.49828 1.95239 2.30108 2.38004 2.72777 3.08524 3.09382 3.41149 3.67200 3.68875 3.91150 3.96555 4.06858 4.17390 4.21372 4.28131 4.32113 4.35695 4.40284 4.47607 4.52628 4.57919 4.65952 4.70486 4.77012 4.78341 4.83826 4.99545 5.00918 5.04900 5.12000 5.28835 5.37443 5.40088 5.54641 5.55601 5.65986 5.69235 5.73337 5.85661 5.99368 6.05600 6.09463 6.34852 6.39619 6.46244 6.79420 7.12037 7.35211 8.91072 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.001605 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.366094 B =17446.574222 C =17622.641081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.050 0.950 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.033 0.967 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.247 1.247 12 H -0.286 1.286 13 C 0.075 3.925 14 N -0.689 5.689 15 C 0.098 3.902 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.123 4.123 20 C 0.161 3.839 21 N -0.575 5.575 22 C 0.514 3.486 23 O -0.498 6.498 24 C 0.072 3.928 25 N -0.712 5.712 26 C 0.694 3.306 27 O -0.581 6.581 28 C -0.100 4.100 29 C -0.112 4.112 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.344 0.656 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.453 0.547 48 H 0.125 0.875 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 -2.572 -41.146 41.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.051 0.949 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.170 1.170 12 H -0.212 1.212 13 C -0.054 4.054 14 N -0.322 5.322 15 C -0.031 4.031 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.125 4.125 20 C 0.040 3.960 21 N -0.321 5.321 22 C 0.303 3.697 23 O -0.369 6.369 24 C -0.054 4.054 25 N -0.377 5.377 26 C 0.394 3.606 27 O -0.458 6.458 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.163 0.837 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.123 0.877 45 H 0.169 0.831 46 H 0.176 0.824 47 H 0.300 0.700 48 H 0.143 0.857 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.595 -1.934 -40.508 40.559 hybrid contribution 0.061 -0.861 0.852 1.213 sum -0.533 -2.796 -39.656 39.758 Atomic orbital electron populations 1.21663 0.95353 1.01048 1.00584 1.20896 0.95993 0.99004 0.93228 0.93112 1.19556 0.96015 0.95666 0.93127 1.21464 1.34378 1.08633 0.91307 0.94856 1.26025 0.97023 1.01084 0.95509 1.70079 1.49113 1.41608 0.98729 0.85667 0.79320 0.79421 0.78274 1.19234 1.17000 1.21232 1.21917 1.00254 0.94503 0.88733 1.60518 1.20299 1.50437 1.00926 1.20905 1.01031 0.94419 0.86696 1.19925 0.94836 0.96729 0.96012 1.21234 0.96046 1.00468 0.96265 1.21185 0.99685 0.94738 0.96130 1.20063 0.95610 0.98845 0.97951 1.20542 1.01477 0.95486 0.78466 1.46538 1.18272 1.40815 1.26455 1.21604 0.85928 0.77332 0.84810 1.90821 1.18697 1.55616 1.71785 1.22719 0.84060 0.99979 0.98624 1.45419 1.21626 1.43007 1.27685 1.16094 0.81440 0.81425 0.81615 1.91004 1.47241 1.39442 1.68085 1.21191 0.95912 0.99361 0.95416 1.21174 1.00307 0.95409 0.96170 0.93021 0.94721 0.91848 0.96512 0.96350 0.92703 0.91397 0.94562 0.83689 0.90116 0.93404 0.84831 0.84912 0.86822 0.87674 0.83104 0.82356 0.69986 0.85731 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.77 71.98 0.63 -4.08 16 2 C -0.07 -2.83 2.55 -10.80 -0.03 -2.85 16 3 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 5 C -0.52 -30.32 8.96 25.60 0.23 -30.09 16 6 H 0.03 2.15 7.30 -2.91 -0.02 2.13 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.07 2.30 5.14 86.30 0.44 2.74 16 14 N -0.69 -18.52 6.49 -517.95 -3.36 -21.88 16 15 C 0.10 2.17 5.81 85.56 0.50 2.66 16 16 C -0.07 -1.61 5.39 -19.87 -0.11 -1.71 16 17 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 18 C -0.10 -1.83 9.70 22.27 0.22 -1.61 16 19 C -0.12 -2.29 5.46 -19.87 -0.11 -2.40 16 20 C 0.16 2.39 5.83 85.63 0.50 2.88 16 21 N -0.58 -7.78 2.59 -777.23 -2.01 -9.79 16 22 C 0.51 5.56 8.31 87.94 0.73 6.29 16 23 O -0.50 -8.37 17.76 -2.88 -0.05 -8.42 16 24 C 0.07 0.06 7.97 85.76 0.68 0.74 16 25 N -0.71 -3.39 6.58 -480.30 -3.16 -6.56 16 26 C 0.69 10.03 8.62 179.44 1.55 11.57 16 27 O -0.58 -13.15 17.48 -3.85 -0.07 -13.22 16 28 C -0.10 -2.10 9.70 22.27 0.22 -1.88 16 29 C -0.11 -2.48 9.70 22.27 0.22 -2.27 16 30 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.03 1.47 6.95 -2.39 -0.02 1.46 16 32 H 0.06 1.92 6.68 -2.38 -0.02 1.91 16 33 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 34 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 35 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.34 8.86 6.97 -89.69 -0.63 8.24 16 39 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 40 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 41 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.11 1.41 7.95 -2.39 -0.02 1.39 16 44 H 0.10 1.54 7.80 -2.39 -0.02 1.53 16 45 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.16 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.45 0.08 8.96 -92.71 -0.83 -0.75 16 48 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 49 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -78.86 406.63 -0.55 -79.42 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.54 Total: 16.16 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 6.45 Total: -21.88 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -8.23 Total: -98.89 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.12 Total: -21.64 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -78.86 -0.55 -79.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877716782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.111 kcal (2) G-P(sol) polarization free energy of solvation -78.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds