Wall clock time and date at job start Wed Apr 1 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.75028 * 2 1 4 4 C 1.53370 * 109.60952 * 239.57117 * 2 1 3 5 5 N 1.46966 * 108.63435 * 190.83500 * 4 2 1 6 6 C 1.34770 * 120.59458 * 235.20433 * 5 4 2 7 7 O 1.21280 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47123 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47112 * 179.97438 * 9 8 6 11 11 O 1.21210 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.47544 * 120.00123 * 180.02562 * 10 9 8 13 13 C 1.39549 * 119.74251 * 179.97438 * 12 10 9 14 14 C 1.38575 * 119.03816 * 179.78839 * 13 12 10 15 15 C 1.38633 * 118.49891 * 0.47946 * 14 13 12 16 16 C 1.38655 * 119.38978 * 359.49754 * 15 14 13 17 17 N 1.31445 * 120.93149 * 0.28164 * 16 15 14 18 18 C 1.46966 * 118.81251 * 55.48049 * 5 4 2 19 19 C 1.53820 * 108.39548 * 304.48032 * 18 5 4 20 20 H 1.08993 * 109.74201 * 289.84846 * 19 18 5 21 21 C 1.53003 * 109.53293 * 169.30181 * 19 18 5 22 22 N 1.46964 * 108.57512 * 49.64116 * 19 18 5 23 23 C 1.36941 * 120.59198 * 124.62569 * 22 19 18 24 24 H 1.07999 * 120.00072 * 234.31683 * 23 22 19 25 25 C 1.38813 * 120.00245 * 54.31929 * 23 22 19 26 26 N 1.31626 * 119.99968 * 20.00951 * 25 23 22 27 27 Si 1.86797 * 119.99982 * 200.01309 * 25 23 22 28 28 H 1.48498 * 109.47019 * 89.99796 * 27 25 23 29 29 H 1.48499 * 109.47192 * 209.99459 * 27 25 23 30 30 H 1.48497 * 109.47278 * 329.99881 * 27 25 23 31 31 H 1.09001 * 109.47272 * 180.42854 * 1 2 3 32 32 H 1.09005 * 109.46826 * 300.43045 * 1 2 3 33 33 H 1.09008 * 109.46671 * 60.42372 * 1 2 3 34 34 H 1.08997 * 109.60898 * 71.09132 * 4 2 1 35 35 H 1.09001 * 109.75323 * 310.65777 * 4 2 1 36 36 H 1.09000 * 109.46754 * 59.99969 * 8 6 5 37 37 H 1.09002 * 109.46665 * 300.00234 * 8 6 5 38 38 H 1.09004 * 109.46955 * 59.99995 * 9 8 6 39 39 H 1.08991 * 109.47444 * 300.00191 * 9 8 6 40 40 H 1.07998 * 120.47955 * 0.02659 * 13 12 10 41 41 H 1.08002 * 120.74766 * 180.23047 * 14 13 12 42 42 H 1.07996 * 120.29908 * 179.77997 * 15 14 13 43 43 H 1.08003 * 119.53752 * 180.25349 * 16 15 14 44 44 H 1.09002 * 109.61413 * 64.26006 * 18 5 4 45 45 H 1.09002 * 109.61194 * 184.77785 * 18 5 4 46 46 H 1.09005 * 109.47088 * 292.94220 * 21 19 18 47 47 H 1.09003 * 109.46754 * 52.93667 * 21 19 18 48 48 H 1.08997 * 109.46931 * 172.93643 * 21 19 18 49 49 H 0.97001 * 119.99724 * 182.20250 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2457 5 7 3.4908 -0.9490 -1.0988 6 6 4.3492 -0.5135 -2.0420 7 8 3.9305 0.0632 -3.0234 8 6 5.8295 -0.7440 -1.8780 9 6 6.5732 -0.1569 -3.0793 10 6 8.0536 -0.3869 -2.9149 11 8 8.4721 -0.9636 -1.9344 12 6 8.9933 0.0900 -3.9476 13 6 10.3630 -0.1253 -3.7897 14 6 11.2322 0.3248 -4.7706 15 6 10.7044 0.9834 -5.8704 16 6 9.3326 1.1624 -5.9627 17 7 8.5289 0.7218 -5.0205 18 6 3.9835 -1.6551 0.0922 19 6 3.4692 -0.9184 1.3408 20 1 3.9756 0.0420 1.4362 21 6 3.7368 -1.7697 2.5836 22 7 2.0232 -0.7012 1.1937 23 6 1.1509 -1.1445 2.1518 24 1 0.3261 -1.7850 1.8763 25 6 1.3267 -0.7707 3.4770 26 7 2.0522 0.2874 3.7716 27 14 0.5339 -1.7691 4.8422 28 1 1.4670 -2.8385 5.2793 29 1 0.2267 -0.8801 5.9914 30 1 -0.7223 -2.3826 4.3413 31 1 -0.3634 -1.0276 0.0077 32 1 -0.3633 0.5205 0.8862 33 1 -0.3633 0.5073 -0.8938 34 1 1.8541 -0.1252 -2.1311 35 1 1.5387 -1.6921 -1.3442 36 1 6.0259 -1.8144 -1.8172 37 1 6.1737 -0.2590 -0.9645 38 1 6.3768 0.9135 -3.1405 39 1 6.2289 -0.6422 -3.9924 40 1 10.7399 -0.6388 -2.9175 41 1 12.2970 0.1697 -4.6783 42 1 11.3555 1.3495 -6.6504 43 1 8.9185 1.6715 -6.8205 44 1 3.6119 -2.6798 0.0899 45 1 5.0735 -1.6586 0.0907 46 1 3.1231 -2.6698 2.5465 47 1 4.7901 -2.0490 2.6127 48 1 3.4880 -1.1968 3.4768 49 1 2.2015 0.5301 4.6988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880457075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:02 Heat of formation + Delta-G solvation = -5.983228 kcal Electronic energy + Delta-G solvation = -30280.319333 eV Core-core repulsion = 26208.524579 eV Total energy + Delta-G solvation = -4071.794754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.87098 -39.75823 -38.94562 -37.27929 -34.11215 -33.47092 -33.05674 -32.35959 -31.79464 -31.18820 -27.86786 -27.21578 -25.81798 -25.46494 -24.21462 -23.77496 -23.01718 -20.45229 -20.24378 -19.63121 -18.56149 -17.72522 -17.08759 -16.48119 -16.21819 -16.07056 -15.80077 -15.47487 -14.93583 -14.83137 -14.74935 -14.43766 -14.41211 -13.89914 -13.67094 -13.60906 -13.08725 -13.05385 -12.98824 -12.46142 -12.21451 -12.13585 -11.76277 -11.56146 -11.49123 -11.22968 -11.10310 -10.96518 -10.72861 -10.51286 -10.47245 -10.41853 -10.39934 -10.34710 -10.03201 -9.89567 -9.70460 -9.69944 -9.61968 -9.27496 -8.33620 -7.96726 -6.39582 -5.76311 -3.59649 0.11790 0.79916 1.99223 3.03540 3.29502 3.30168 3.39123 3.40430 3.44583 3.63390 4.06289 4.37515 4.40508 4.54653 4.59716 4.69194 4.85228 5.05467 5.15470 5.17289 5.19914 5.27942 5.29947 5.57958 5.63542 5.69678 5.77368 5.81978 5.89792 6.00342 6.04447 6.11225 6.14925 6.17000 6.22058 6.38950 6.45988 6.57515 6.63163 6.73475 6.85750 7.01651 7.06354 7.12917 7.28424 7.40884 7.51143 7.65369 7.82633 7.97644 8.58608 8.60628 9.16036 9.68172 10.46570 11.12918 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.002238 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.890351 B =12509.857675 C =13409.459539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.029 0.971 4 C 0.099 3.901 5 N -0.597 5.597 6 C 0.510 3.490 7 O -0.559 6.559 8 C -0.133 4.133 9 C -0.133 4.133 10 C 0.412 3.588 11 O -0.442 6.442 12 C 0.048 3.952 13 C -0.116 4.116 14 C -0.087 4.087 15 C -0.148 4.148 16 C 0.095 3.905 17 N -0.439 5.439 18 C 0.085 3.915 19 C 0.183 3.817 20 H 0.032 0.968 21 C -0.144 4.144 22 N -0.576 5.576 23 C -0.264 4.264 24 H 0.054 0.946 25 C 0.037 3.963 26 N -0.873 5.873 27 Si 0.884 3.116 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.275 1.275 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.164 0.836 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.091 0.909 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.323 -0.701 -16.132 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.046 0.954 4 C -0.024 4.024 5 N -0.327 5.327 6 C 0.298 3.702 7 O -0.439 6.439 8 C -0.173 4.173 9 C -0.171 4.171 10 C 0.288 3.712 11 O -0.314 6.314 12 C -0.088 4.088 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.168 4.168 16 C -0.065 4.065 17 N -0.151 5.151 18 C -0.040 4.040 19 C 0.076 3.924 20 H 0.050 0.950 21 C -0.202 4.202 22 N -0.301 5.301 23 C -0.394 4.394 24 H 0.071 0.929 25 C -0.165 4.165 26 N -0.512 5.512 27 Si 0.712 3.288 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.200 1.200 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.110 0.890 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.402 -0.494 -15.963 22.188 hybrid contribution 0.773 -0.542 0.859 1.276 sum 16.175 -1.036 -15.104 22.155 Atomic orbital electron populations 1.21636 0.95031 1.01420 1.00330 1.20870 0.93531 0.93787 0.86836 0.95369 1.22299 0.79187 1.00652 1.00308 1.48039 1.07438 1.56168 1.21098 1.20476 0.88403 0.78731 0.82557 1.90642 1.79481 1.43348 1.30432 1.21501 0.92257 1.03579 0.99968 1.21587 0.90302 1.04997 1.00175 1.22502 0.91358 0.74560 0.82786 1.90546 1.81167 1.31513 1.28133 1.21811 0.92950 0.98938 0.95111 1.22354 0.93404 0.97949 0.99932 1.21656 1.00739 0.95695 0.93168 1.22477 0.97145 0.98356 0.98776 1.22930 0.90073 0.96465 0.97020 1.67707 1.40016 1.06822 1.00536 1.22795 0.98197 0.96491 0.86515 1.20680 0.85878 0.95189 0.90679 0.95001 1.22008 0.97027 1.00614 1.00597 1.43954 1.00900 1.64975 1.20240 1.18659 1.09625 1.24462 0.86639 0.92905 1.25576 0.97307 0.94538 0.99109 1.70160 1.40950 1.22189 1.17898 0.86625 0.79816 0.80219 0.82151 1.20800 1.21657 1.19966 0.92882 0.91494 0.94450 0.90202 0.92172 0.88676 0.88359 0.87080 0.87188 0.83569 0.84110 0.84170 0.81847 0.91680 0.90925 0.92885 0.95727 0.89049 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.19 37.16 0.30 -2.17 16 2 C 0.16 3.37 3.65 -67.48 -0.25 3.12 16 3 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.10 1.91 5.90 -3.60 -0.02 1.89 16 5 N -0.60 -11.05 2.94 -172.21 -0.51 -11.56 16 6 C 0.51 9.00 7.70 -10.98 -0.08 8.91 16 7 O -0.56 -11.18 15.39 5.56 0.09 -11.10 16 8 C -0.13 -1.88 3.33 -27.88 -0.09 -1.97 16 9 C -0.13 -1.70 4.47 -27.88 -0.12 -1.82 16 10 C 0.41 5.04 7.13 -30.51 -0.22 4.82 16 11 O -0.44 -6.12 15.95 5.62 0.09 -6.03 16 12 C 0.05 0.52 6.73 -83.12 -0.56 -0.04 16 13 C -0.12 -1.02 9.64 -38.97 -0.38 -1.39 16 14 C -0.09 -0.54 10.17 -39.31 -0.40 -0.94 16 15 C -0.15 -0.83 10.12 -39.28 -0.40 -1.23 16 16 C 0.10 0.71 11.18 -17.56 -0.20 0.51 16 17 N -0.44 -4.64 9.79 -9.88 -0.10 -4.74 16 18 C 0.08 1.52 5.84 -3.36 -0.02 1.50 16 19 C 0.18 3.98 3.26 -67.25 -0.22 3.77 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.14 -3.10 7.85 37.16 0.29 -2.81 16 22 N -0.58 -13.63 2.74 -156.76 -0.43 -14.06 16 23 C -0.26 -6.70 6.61 -15.06 -0.10 -6.80 16 24 H 0.05 1.37 7.18 -52.49 -0.38 0.99 16 25 C 0.04 0.96 3.31 -17.43 -0.06 0.90 16 26 N -0.87 -23.90 11.71 55.49 0.65 -23.25 16 27 Si 0.88 20.33 29.60 -169.99 -5.03 15.29 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 31 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 32 H 0.07 1.44 7.75 -51.93 -0.40 1.04 16 33 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.08 1.53 6.99 -51.93 -0.36 1.16 16 35 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 36 H 0.09 1.23 7.86 -51.93 -0.41 0.83 16 37 H 0.10 1.39 7.69 -51.93 -0.40 0.99 16 38 H 0.11 1.47 8.10 -51.93 -0.42 1.05 16 39 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.15 1.18 7.64 -52.49 -0.40 0.78 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 45 H 0.07 1.13 5.91 -51.93 -0.31 0.82 16 46 H 0.05 1.15 7.56 -51.93 -0.39 0.76 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 2.23 4.94 -51.93 -0.26 1.97 16 49 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -31.22 392.96 -9.31 -40.52 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.47 Total: 2.75 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.52 Total: 6.24 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.38 Total: -53.60 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.18 Total: -17.13 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.22 -9.31 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.542 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds