Wall clock time and date at job start Wed Apr 1 2020 03:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.75028 * 2 1 4 4 C 1.53370 * 109.60952 * 239.57117 * 2 1 3 5 5 N 1.46966 * 108.63435 * 190.83500 * 4 2 1 6 6 C 1.34770 * 120.59458 * 235.20433 * 5 4 2 7 7 O 1.21280 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47123 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47112 * 179.97438 * 9 8 6 11 11 O 1.21210 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.47544 * 120.00123 * 180.02562 * 10 9 8 13 13 C 1.39549 * 119.74251 * 179.97438 * 12 10 9 14 14 C 1.38575 * 119.03816 * 179.78839 * 13 12 10 15 15 C 1.38633 * 118.49891 * 0.47946 * 14 13 12 16 16 C 1.38655 * 119.38978 * 359.49754 * 15 14 13 17 17 N 1.31445 * 120.93149 * 0.28164 * 16 15 14 18 18 C 1.46966 * 118.81251 * 55.48049 * 5 4 2 19 19 C 1.53820 * 108.39548 * 304.48032 * 18 5 4 20 20 H 1.08993 * 109.74201 * 289.84846 * 19 18 5 21 21 C 1.53003 * 109.53293 * 169.30181 * 19 18 5 22 22 N 1.46964 * 108.57512 * 49.64116 * 19 18 5 23 23 C 1.36941 * 120.59198 * 124.62569 * 22 19 18 24 24 H 1.07999 * 120.00072 * 234.31683 * 23 22 19 25 25 C 1.38813 * 120.00245 * 54.31929 * 23 22 19 26 26 N 1.31626 * 119.99968 * 20.00951 * 25 23 22 27 27 Si 1.86797 * 119.99982 * 200.01309 * 25 23 22 28 28 H 1.48498 * 109.47019 * 89.99796 * 27 25 23 29 29 H 1.48499 * 109.47192 * 209.99459 * 27 25 23 30 30 H 1.48497 * 109.47278 * 329.99881 * 27 25 23 31 31 H 1.09001 * 109.47272 * 180.42854 * 1 2 3 32 32 H 1.09005 * 109.46826 * 300.43045 * 1 2 3 33 33 H 1.09008 * 109.46671 * 60.42372 * 1 2 3 34 34 H 1.08997 * 109.60898 * 71.09132 * 4 2 1 35 35 H 1.09001 * 109.75323 * 310.65777 * 4 2 1 36 36 H 1.09000 * 109.46754 * 59.99969 * 8 6 5 37 37 H 1.09002 * 109.46665 * 300.00234 * 8 6 5 38 38 H 1.09004 * 109.46955 * 59.99995 * 9 8 6 39 39 H 1.08991 * 109.47444 * 300.00191 * 9 8 6 40 40 H 1.07998 * 120.47955 * 0.02659 * 13 12 10 41 41 H 1.08002 * 120.74766 * 180.23047 * 14 13 12 42 42 H 1.07996 * 120.29908 * 179.77997 * 15 14 13 43 43 H 1.08003 * 119.53752 * 180.25349 * 16 15 14 44 44 H 1.09002 * 109.61413 * 64.26006 * 18 5 4 45 45 H 1.09002 * 109.61194 * 184.77785 * 18 5 4 46 46 H 1.09005 * 109.47088 * 292.94220 * 21 19 18 47 47 H 1.09003 * 109.46754 * 52.93667 * 21 19 18 48 48 H 1.08997 * 109.46931 * 172.93643 * 21 19 18 49 49 H 0.97001 * 119.99724 * 182.20250 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2457 5 7 3.4908 -0.9490 -1.0988 6 6 4.3492 -0.5135 -2.0420 7 8 3.9305 0.0632 -3.0234 8 6 5.8295 -0.7440 -1.8780 9 6 6.5732 -0.1569 -3.0793 10 6 8.0536 -0.3869 -2.9149 11 8 8.4721 -0.9636 -1.9344 12 6 8.9933 0.0900 -3.9476 13 6 10.3630 -0.1253 -3.7897 14 6 11.2322 0.3248 -4.7706 15 6 10.7044 0.9834 -5.8704 16 6 9.3326 1.1624 -5.9627 17 7 8.5289 0.7218 -5.0205 18 6 3.9835 -1.6551 0.0922 19 6 3.4692 -0.9184 1.3408 20 1 3.9756 0.0420 1.4362 21 6 3.7368 -1.7697 2.5836 22 7 2.0232 -0.7012 1.1937 23 6 1.1509 -1.1445 2.1518 24 1 0.3261 -1.7850 1.8763 25 6 1.3267 -0.7707 3.4770 26 7 2.0522 0.2874 3.7716 27 14 0.5339 -1.7691 4.8422 28 1 1.4670 -2.8385 5.2793 29 1 0.2267 -0.8801 5.9914 30 1 -0.7223 -2.3826 4.3413 31 1 -0.3634 -1.0276 0.0077 32 1 -0.3633 0.5205 0.8862 33 1 -0.3633 0.5073 -0.8938 34 1 1.8541 -0.1252 -2.1311 35 1 1.5387 -1.6921 -1.3442 36 1 6.0259 -1.8144 -1.8172 37 1 6.1737 -0.2590 -0.9645 38 1 6.3768 0.9135 -3.1405 39 1 6.2289 -0.6422 -3.9924 40 1 10.7399 -0.6388 -2.9175 41 1 12.2970 0.1697 -4.6783 42 1 11.3555 1.3495 -6.6504 43 1 8.9185 1.6715 -6.8205 44 1 3.6119 -2.6798 0.0899 45 1 5.0735 -1.6586 0.0907 46 1 3.1231 -2.6698 2.5465 47 1 4.7901 -2.0490 2.6127 48 1 3.4880 -1.1968 3.4768 49 1 2.2015 0.5301 4.6988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880457075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:00 Heat of formation + Delta-G solvation = -23.957028 kcal Electronic energy + Delta-G solvation = -30281.098735 eV Core-core repulsion = 26208.524579 eV Total energy + Delta-G solvation = -4072.574156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.65332 -41.09992 -39.88044 -38.91695 -35.80272 -34.85474 -34.08985 -33.32191 -33.05651 -32.44369 -29.60094 -28.52877 -27.34308 -26.90406 -25.49070 -24.62391 -24.06025 -22.05864 -21.54411 -21.02161 -20.00575 -18.76930 -18.11471 -17.80210 -17.28870 -17.07722 -17.01437 -16.74229 -16.61826 -16.25929 -15.99681 -15.61579 -15.38007 -15.30155 -14.83952 -14.79842 -14.56584 -14.22577 -14.08660 -13.68443 -13.59400 -13.35919 -13.23574 -13.12302 -12.93611 -12.80432 -12.63858 -12.39471 -12.31524 -12.22919 -12.20580 -12.14589 -11.72838 -11.64093 -11.47036 -11.27490 -10.95292 -10.78140 -10.40083 -10.21367 -10.19990 -9.64310 -8.35631 -7.69412 -5.60404 -0.55416 0.26475 1.20192 1.46186 1.50579 1.56461 1.61235 2.01480 2.50298 2.69882 2.82831 3.24324 3.35894 3.51758 3.61525 3.83784 3.96216 4.04038 4.06489 4.09612 4.13563 4.20251 4.27727 4.37235 4.48503 4.51617 4.54607 4.58674 4.66251 4.75448 4.76345 4.81030 4.85103 4.92285 4.96539 4.98359 5.02286 5.08866 5.15546 5.20757 5.38790 5.43085 5.61993 5.63963 5.66369 5.75649 5.91690 6.19170 6.50442 6.58944 6.87269 7.15844 7.24542 7.77853 8.52911 9.14259 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.002238 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.890351 B =12509.857675 C =13409.459539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.152 3.848 3 H -0.003 1.003 4 C 0.110 3.890 5 N -0.604 5.604 6 C 0.510 3.490 7 O -0.584 6.584 8 C -0.125 4.125 9 C -0.126 4.126 10 C 0.419 3.581 11 O -0.465 6.465 12 C 0.016 3.984 13 C -0.123 4.123 14 C -0.085 4.085 15 C -0.130 4.130 16 C 0.083 3.917 17 N -0.470 5.470 18 C 0.098 3.902 19 C 0.179 3.821 20 H 0.000 1.000 21 C -0.137 4.137 22 N -0.590 5.590 23 C -0.262 4.262 24 H 0.050 0.950 25 C 0.000 4.000 26 N -0.907 5.907 27 Si 0.938 3.062 28 H -0.276 1.276 29 H -0.299 1.299 30 H -0.269 1.269 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.147 0.853 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.188 0.812 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.048 0.952 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.273 -1.758 -18.042 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.045 3.955 3 H 0.015 0.985 4 C -0.014 4.014 5 N -0.334 5.334 6 C 0.299 3.701 7 O -0.465 6.465 8 C -0.165 4.165 9 C -0.164 4.164 10 C 0.296 3.704 11 O -0.339 6.339 12 C -0.118 4.118 13 C -0.143 4.143 14 C -0.111 4.111 15 C -0.150 4.150 16 C -0.078 4.078 17 N -0.182 5.182 18 C -0.026 4.026 19 C 0.072 3.928 20 H 0.018 0.982 21 C -0.195 4.195 22 N -0.315 5.315 23 C -0.392 4.392 24 H 0.067 0.933 25 C -0.200 4.200 26 N -0.548 5.548 27 Si 0.766 3.234 28 H -0.202 1.202 29 H -0.225 1.225 30 H -0.194 1.194 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.164 0.836 41 H 0.191 0.809 42 H 0.197 0.803 43 H 0.205 0.795 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.353 -1.568 -17.887 24.971 hybrid contribution 0.222 -0.104 1.323 1.346 sum 17.575 -1.672 -16.564 24.208 Atomic orbital electron populations 1.21522 0.93689 1.01625 1.00495 1.20950 0.94745 0.92376 0.87426 0.98488 1.22071 0.79956 1.00679 0.98687 1.48138 1.07316 1.56476 1.21516 1.21034 0.89581 0.77650 0.81789 1.90627 1.80162 1.44254 1.31447 1.21482 0.89586 1.04789 1.00615 1.21489 0.91063 1.04308 0.99524 1.22481 0.91170 0.73855 0.82888 1.90525 1.81384 1.32896 1.29107 1.21583 0.93493 1.01203 0.95518 1.22495 0.92938 0.98102 1.00812 1.22079 1.02012 0.94652 0.92348 1.22918 0.96762 0.96267 0.99017 1.23480 0.91107 0.96216 0.96959 1.67636 1.41519 1.07776 1.01250 1.22621 0.99754 0.95966 0.84239 1.20674 0.84837 0.94338 0.92909 0.98234 1.21870 0.98907 0.99626 0.99070 1.44218 1.01570 1.65204 1.20524 1.18770 1.09633 1.23687 0.87100 0.93304 1.26105 0.97942 0.95134 1.00813 1.70270 1.42858 1.23844 1.17828 0.85760 0.79265 0.78857 0.79536 1.20199 1.22536 1.19355 0.92472 0.94103 0.91531 0.90133 0.91164 0.86936 0.88196 0.87969 0.87223 0.83550 0.80883 0.80331 0.79520 0.90675 0.88083 0.93272 0.92631 0.91988 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.19 71.98 0.59 -3.94 16 2 C 0.15 6.62 3.65 45.03 0.16 6.78 16 3 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 4 C 0.11 4.17 5.90 86.41 0.51 4.68 16 5 N -0.60 -21.91 2.94 -817.13 -2.40 -24.32 16 6 C 0.51 17.68 7.70 87.66 0.67 18.35 16 7 O -0.58 -23.24 15.39 -3.03 -0.05 -23.29 16 8 C -0.13 -3.43 3.33 29.85 0.10 -3.33 16 9 C -0.13 -3.22 4.47 29.85 0.13 -3.09 16 10 C 0.42 10.24 7.13 28.14 0.20 10.44 16 11 O -0.47 -12.82 15.95 -2.81 -0.04 -12.87 16 12 C 0.02 0.35 6.73 41.76 0.28 0.63 16 13 C -0.12 -2.00 9.64 22.67 0.22 -1.79 16 14 C -0.09 -0.81 10.17 22.44 0.23 -0.58 16 15 C -0.13 -1.00 10.12 22.46 0.23 -0.77 16 16 C 0.08 1.05 11.18 84.85 0.95 2.00 16 17 N -0.47 -9.60 9.79 -185.17 -1.81 -11.42 16 18 C 0.10 3.40 5.84 86.57 0.51 3.91 16 19 C 0.18 7.84 3.26 45.18 0.15 7.99 16 20 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 21 C -0.14 -5.82 7.85 71.98 0.56 -5.26 16 22 N -0.59 -28.26 2.74 -649.86 -1.78 -30.04 16 23 C -0.26 -13.39 6.61 84.03 0.56 -12.83 16 24 H 0.05 2.53 7.18 -2.91 -0.02 2.51 16 25 C 0.00 -0.02 3.31 84.86 0.28 0.26 16 26 N -0.91 -51.07 11.71 21.65 0.25 -50.82 16 27 Si 0.94 42.13 29.60 68.60 2.03 44.16 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 30 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 31 H 0.06 2.17 7.45 -2.39 -0.02 2.16 16 32 H 0.04 1.79 7.75 -2.38 -0.02 1.77 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 35 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 36 H 0.11 2.72 7.86 -2.39 -0.02 2.70 16 37 H 0.10 2.75 7.69 -2.39 -0.02 2.73 16 38 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 39 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 40 H 0.15 2.26 7.64 -2.91 -0.02 2.24 16 41 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 43 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 45 H 0.10 2.93 5.91 -2.39 -0.01 2.91 16 46 H 0.05 2.09 7.56 -2.38 -0.02 2.07 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.06 3.05 4.94 -2.39 -0.01 3.04 16 49 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -69.72 392.96 3.47 -66.24 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.95 Total: 18.88 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.33 Total: 23.46 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -5.74 Total: -116.59 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.09 Total: -36.15 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.72 3.47 -66.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.288 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds