Wall clock time and date at job start Wed Apr 1 2020 03:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.60405 * 2 1 4 4 C 1.53364 * 109.61244 * 120.33880 * 2 1 3 5 5 N 1.46973 * 108.63259 * 70.32295 * 4 2 1 6 6 C 1.34775 * 120.58994 * 235.20109 * 5 4 2 7 7 O 1.21594 * 120.00621 * 5.50670 * 6 5 4 8 8 C 1.47528 * 119.99940 * 185.50106 * 6 5 4 9 9 C 1.39920 * 120.69252 * 46.64761 * 8 6 5 10 10 C 1.38440 * 118.54643 * 179.97438 * 9 8 6 11 11 C 1.38399 * 119.62682 * 0.04438 * 10 9 8 12 12 N 1.32357 * 120.59895 * 359.96312 * 11 10 9 13 13 C 1.32029 * 122.19094 * 0.02562 * 12 11 10 14 14 O 1.35434 * 119.78628 * 179.72305 * 13 12 11 15 15 C 1.51550 * 109.52099 * 179.97438 * 11 10 9 16 16 C 1.54314 * 105.23132 * 17.25515 * 15 11 10 17 17 C 1.51279 * 130.45447 * 180.02562 * 10 9 8 18 18 C 1.46960 * 118.81274 * 55.47745 * 5 4 2 19 19 C 1.53808 * 108.39844 * 304.48475 * 18 5 4 20 20 H 1.08996 * 109.74322 * 289.84515 * 19 18 5 21 21 C 1.53005 * 109.53241 * 169.30050 * 19 18 5 22 22 N 1.46963 * 108.57974 * 49.63632 * 19 18 5 23 23 C 1.36946 * 120.59561 * 124.66945 * 22 19 18 24 24 H 1.07998 * 119.99585 * 330.38903 * 23 22 19 25 25 C 1.38809 * 120.00177 * 150.38522 * 23 22 19 26 26 N 1.31624 * 120.00077 * 343.00030 * 25 23 22 27 27 Si 1.86800 * 120.00073 * 162.99539 * 25 23 22 28 28 H 1.48500 * 109.46908 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46977 * 119.99961 * 27 25 23 30 30 H 1.48498 * 109.46867 * 240.00434 * 27 25 23 31 31 H 1.08996 * 109.46975 * 299.65598 * 1 2 3 32 32 H 1.08996 * 109.46872 * 59.66033 * 1 2 3 33 33 H 1.09000 * 109.46902 * 179.65847 * 1 2 3 34 34 H 1.09003 * 109.61105 * 310.58501 * 4 2 1 35 35 H 1.08996 * 109.61313 * 190.06849 * 4 2 1 36 36 H 1.08006 * 120.72160 * 0.02562 * 9 8 6 37 37 H 0.96697 * 114.00333 * 89.99568 * 14 13 12 38 38 H 1.09002 * 110.29048 * 136.19514 * 15 11 10 39 39 H 1.08997 * 110.28858 * 258.31262 * 15 11 10 40 40 H 1.08996 * 110.81469 * 91.79272 * 16 15 11 41 41 H 1.09002 * 110.81394 * 215.13016 * 16 15 11 42 42 H 1.08995 * 110.31402 * 43.89539 * 17 10 9 43 43 H 1.09001 * 110.39499 * 281.76717 * 17 10 9 44 44 H 1.09005 * 109.60955 * 64.26539 * 18 5 4 45 45 H 1.08998 * 109.60860 * 184.77778 * 18 5 4 46 46 H 1.08994 * 109.46987 * 304.90517 * 21 19 18 47 47 H 1.08995 * 109.46937 * 64.90374 * 21 19 18 48 48 H 1.09000 * 109.46902 * 184.90313 * 21 19 18 49 49 H 0.96993 * 119.99792 * 185.07832 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0448 -0.7297 1.2468 5 7 1.7607 -2.1644 1.1020 6 6 1.0608 -2.8237 2.0464 7 8 0.5726 -2.2138 2.9782 8 6 0.8867 -4.2855 1.9496 9 6 1.9754 -5.1170 1.6647 10 6 1.7617 -6.4825 1.5847 11 6 0.4894 -6.9888 1.7854 12 7 -0.5232 -6.1797 2.0534 13 6 -0.3736 -4.8709 2.1410 14 8 -1.4448 -4.0879 2.4122 15 6 0.5169 -8.4976 1.6455 16 6 2.0038 -8.8897 1.7748 17 6 2.7265 -7.6118 1.2978 18 6 2.2587 -2.8685 -0.0879 19 6 1.7392 -2.1375 -1.3374 20 1 0.6641 -2.2898 -1.4327 21 6 2.4500 -2.6790 -2.5794 22 7 2.0233 -0.7029 -1.1927 23 6 2.7345 -0.0329 -2.1522 24 1 3.4751 -0.5559 -2.7390 25 6 2.5035 1.3183 -2.3705 26 7 1.4026 1.8795 -1.9170 27 14 3.7550 2.3403 -3.3079 28 1 4.8970 1.4795 -3.7081 29 1 3.1179 2.9123 -4.5212 30 1 4.2448 3.4412 -2.4400 31 1 -0.3633 0.5085 0.8930 32 1 -0.3633 0.5191 -0.8869 33 1 -0.3633 -1.0277 -0.0061 34 1 1.5384 -0.3440 2.1317 35 1 3.1199 -0.5775 1.3421 36 1 2.9609 -4.7027 1.5114 37 1 -1.5929 -3.9370 3.3558 38 1 -0.0669 -8.9617 2.4404 39 1 0.1313 -8.7938 0.6700 40 1 2.2564 -9.1143 2.8110 41 1 2.2390 -9.7353 1.1284 42 1 3.6518 -7.4700 1.8561 43 1 2.9352 -7.6711 0.2296 44 1 3.3488 -2.8651 -0.0855 45 1 1.8937 -3.8956 -0.0847 46 1 3.5285 -2.5952 -2.4462 47 1 2.1820 -3.7255 -2.7241 48 1 2.1458 -2.1019 -3.4527 49 1 1.2058 2.8045 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:33 Heat of formation + Delta-G solvation = -4.215982 kcal Electronic energy + Delta-G solvation = -31990.186384 eV Core-core repulsion = 27918.468264 eV Total energy + Delta-G solvation = -4071.718120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.25242 -39.52640 -38.08080 -37.11866 -35.40260 -34.16786 -33.13661 -32.53128 -31.20382 -29.20082 -28.06193 -27.90414 -26.35692 -25.62050 -24.05943 -23.45404 -22.68271 -21.33530 -20.80402 -19.81016 -18.73709 -18.41966 -17.25710 -17.07697 -16.23282 -16.16526 -15.40161 -15.30048 -15.12471 -14.86803 -14.26575 -14.03777 -13.91187 -13.52884 -13.45271 -13.23644 -13.13854 -13.08852 -12.58966 -12.54573 -12.21987 -11.99135 -11.76661 -11.69293 -11.59594 -11.56404 -11.23615 -11.18874 -11.02676 -10.81052 -10.64535 -10.60574 -10.16838 -10.07368 -9.98246 -9.80171 -9.71300 -9.56449 -9.20800 -8.72467 -8.52791 -8.20438 -6.63284 -5.83403 -3.27197 0.58611 0.96473 2.84385 3.22606 3.27265 3.33332 3.41916 3.42933 3.63580 4.10777 4.13964 4.42664 4.56527 4.57663 4.64716 4.77285 4.93899 5.14139 5.16269 5.31523 5.35336 5.39045 5.44155 5.54695 5.60330 5.61376 5.62944 5.72408 5.80348 5.83232 5.88913 6.01780 6.12609 6.20914 6.24475 6.25046 6.33220 6.47620 6.63164 6.78624 6.88353 6.93418 7.03515 7.08176 7.44911 7.58015 7.66795 7.73293 7.79181 7.88123 8.41012 8.45740 9.15898 9.77589 10.35282 11.24727 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.003328 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.002344 B = 8411.572435 C = 9367.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.181 3.819 3 H 0.106 0.894 4 C 0.093 3.907 5 N -0.584 5.584 6 C 0.565 3.435 7 O -0.543 6.543 8 C -0.185 4.185 9 C -0.019 4.019 10 C -0.169 4.169 11 C 0.157 3.843 12 N -0.503 5.503 13 C 0.364 3.636 14 O -0.468 6.468 15 C -0.072 4.072 16 C -0.118 4.118 17 C -0.075 4.075 18 C 0.089 3.911 19 C 0.155 3.845 20 H 0.032 0.968 21 C -0.135 4.135 22 N -0.580 5.580 23 C -0.255 4.255 24 H 0.071 0.929 25 C 0.007 3.993 26 N -0.897 5.897 27 Si 0.901 3.099 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.407 0.593 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -19.716 7.283 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.074 3.926 3 H 0.124 0.876 4 C -0.030 4.030 5 N -0.314 5.314 6 C 0.352 3.648 7 O -0.422 6.422 8 C -0.192 4.192 9 C -0.044 4.044 10 C -0.171 4.171 11 C 0.018 3.982 12 N -0.221 5.221 13 C 0.184 3.816 14 O -0.275 6.275 15 C -0.110 4.110 16 C -0.156 4.156 17 C -0.113 4.113 18 C -0.036 4.036 19 C 0.047 3.953 20 H 0.049 0.951 21 C -0.193 4.193 22 N -0.303 5.303 23 C -0.385 4.385 24 H 0.089 0.911 25 C -0.192 4.192 26 N -0.541 5.541 27 Si 0.731 3.269 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.266 0.734 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.540 -19.411 7.324 20.803 hybrid contribution 1.197 1.119 -0.245 1.657 sum 2.737 -18.291 7.078 19.803 Atomic orbital electron populations 1.21973 0.97926 0.98776 1.01071 1.20721 0.92514 0.96764 0.82613 0.87637 1.22568 1.00000 0.78731 1.01743 1.47908 1.52593 1.10774 1.20130 1.17752 0.78800 0.85547 0.82719 1.90729 1.49073 1.68376 1.34057 1.21023 0.94279 0.95700 1.08186 1.21174 0.98832 0.91630 0.92795 1.21345 0.97661 0.94372 1.03740 1.21776 0.87732 0.96262 0.92399 1.66303 1.35499 1.04205 1.16135 1.18766 0.84690 0.85278 0.92834 1.84700 1.45603 1.66085 1.31149 1.21082 0.97970 0.88147 1.03803 1.22314 0.93449 0.97434 1.02406 1.20944 0.97132 0.90917 1.02298 1.22738 0.98846 0.95546 0.86493 1.20833 0.96508 0.86663 0.91295 0.95081 1.21768 1.00428 0.98355 0.98763 1.44182 1.63162 1.02797 1.20147 1.19185 1.13249 0.91684 1.14343 0.91112 1.25111 0.96481 0.98451 0.99198 1.69948 1.23013 1.13299 1.47812 0.86253 0.81118 0.80398 0.79146 1.20341 1.21833 1.21599 0.95245 0.90630 0.95863 0.89942 0.92061 0.83888 0.73365 0.89455 0.88826 0.90547 0.89692 0.90162 0.89477 0.91439 0.91026 0.92693 0.94226 0.91212 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.96 37.16 0.33 -2.90 16 2 C 0.18 4.16 2.34 -67.49 -0.16 4.00 16 3 H 0.11 2.72 6.09 -51.93 -0.32 2.40 16 4 C 0.09 1.85 5.97 -3.60 -0.02 1.83 16 5 N -0.58 -10.75 2.60 -173.45 -0.45 -11.20 16 6 C 0.57 10.39 7.02 -12.47 -0.09 10.30 16 7 O -0.54 -11.23 15.88 -5.45 -0.09 -11.32 16 8 C -0.19 -2.89 4.93 -104.72 -0.52 -3.40 16 9 C -0.02 -0.23 7.59 -38.88 -0.29 -0.53 16 10 C -0.17 -1.81 6.14 -104.20 -0.64 -2.45 16 11 C 0.16 1.84 7.32 -81.89 -0.60 1.24 16 12 N -0.50 -7.37 10.36 -8.88 -0.09 -7.46 16 13 C 0.36 5.76 7.74 -16.70 -0.13 5.63 16 14 O -0.47 -7.42 12.57 -28.73 -0.36 -7.78 16 15 C -0.07 -0.55 6.77 -26.78 -0.18 -0.73 16 16 C -0.12 -0.64 7.08 -25.33 -0.18 -0.82 16 17 C -0.08 -0.52 6.77 -26.89 -0.18 -0.70 16 18 C 0.09 1.48 4.75 -3.37 -0.02 1.47 16 19 C 0.15 3.08 3.24 -67.26 -0.22 2.86 16 20 H 0.03 0.69 7.38 -51.93 -0.38 0.31 16 21 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 22 N -0.58 -13.53 2.68 -156.76 -0.42 -13.95 16 23 C -0.26 -6.45 8.49 -15.06 -0.13 -6.57 16 24 H 0.07 1.74 6.31 -52.49 -0.33 1.41 16 25 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 26 N -0.90 -24.57 10.15 55.49 0.56 -24.01 16 27 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.96 7.13 -51.93 -0.37 1.59 16 33 H 0.02 0.53 7.00 -51.93 -0.36 0.17 16 34 H 0.08 1.67 6.96 -51.93 -0.36 1.31 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.14 1.57 7.23 -52.48 -0.38 1.19 16 37 H 0.41 4.78 9.06 45.56 0.41 5.19 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 45 H 0.07 1.07 4.94 -51.93 -0.26 0.82 16 46 H 0.05 0.93 7.59 -51.93 -0.39 0.54 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.35 7.44 -51.93 -0.39 0.96 16 49 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -31.72 379.93 -9.45 -41.17 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.49 Total: 5.83 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.81 Total: 7.25 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.40 Total: -56.62 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.45 Total: -19.10 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.72 -9.45 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.954 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds