Wall clock time and date at job start Wed Apr 1 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.60405 * 2 1 4 4 C 1.53364 * 109.61244 * 120.33880 * 2 1 3 5 5 N 1.46973 * 108.63259 * 70.32295 * 4 2 1 6 6 C 1.34775 * 120.58994 * 235.20109 * 5 4 2 7 7 O 1.21594 * 120.00621 * 5.50670 * 6 5 4 8 8 C 1.47528 * 119.99940 * 185.50106 * 6 5 4 9 9 C 1.39920 * 120.69252 * 46.64761 * 8 6 5 10 10 C 1.38440 * 118.54643 * 179.97438 * 9 8 6 11 11 C 1.38399 * 119.62682 * 0.04438 * 10 9 8 12 12 N 1.32357 * 120.59895 * 359.96312 * 11 10 9 13 13 C 1.32029 * 122.19094 * 0.02562 * 12 11 10 14 14 O 1.35434 * 119.78628 * 179.72305 * 13 12 11 15 15 C 1.51550 * 109.52099 * 179.97438 * 11 10 9 16 16 C 1.54314 * 105.23132 * 17.25515 * 15 11 10 17 17 C 1.51279 * 130.45447 * 180.02562 * 10 9 8 18 18 C 1.46960 * 118.81274 * 55.47745 * 5 4 2 19 19 C 1.53808 * 108.39844 * 304.48475 * 18 5 4 20 20 H 1.08996 * 109.74322 * 289.84515 * 19 18 5 21 21 C 1.53005 * 109.53241 * 169.30050 * 19 18 5 22 22 N 1.46963 * 108.57974 * 49.63632 * 19 18 5 23 23 C 1.36946 * 120.59561 * 124.66945 * 22 19 18 24 24 H 1.07998 * 119.99585 * 330.38903 * 23 22 19 25 25 C 1.38809 * 120.00177 * 150.38522 * 23 22 19 26 26 N 1.31624 * 120.00077 * 343.00030 * 25 23 22 27 27 Si 1.86800 * 120.00073 * 162.99539 * 25 23 22 28 28 H 1.48500 * 109.46908 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46977 * 119.99961 * 27 25 23 30 30 H 1.48498 * 109.46867 * 240.00434 * 27 25 23 31 31 H 1.08996 * 109.46975 * 299.65598 * 1 2 3 32 32 H 1.08996 * 109.46872 * 59.66033 * 1 2 3 33 33 H 1.09000 * 109.46902 * 179.65847 * 1 2 3 34 34 H 1.09003 * 109.61105 * 310.58501 * 4 2 1 35 35 H 1.08996 * 109.61313 * 190.06849 * 4 2 1 36 36 H 1.08006 * 120.72160 * 0.02562 * 9 8 6 37 37 H 0.96697 * 114.00333 * 89.99568 * 14 13 12 38 38 H 1.09002 * 110.29048 * 136.19514 * 15 11 10 39 39 H 1.08997 * 110.28858 * 258.31262 * 15 11 10 40 40 H 1.08996 * 110.81469 * 91.79272 * 16 15 11 41 41 H 1.09002 * 110.81394 * 215.13016 * 16 15 11 42 42 H 1.08995 * 110.31402 * 43.89539 * 17 10 9 43 43 H 1.09001 * 110.39499 * 281.76717 * 17 10 9 44 44 H 1.09005 * 109.60955 * 64.26539 * 18 5 4 45 45 H 1.08998 * 109.60860 * 184.77778 * 18 5 4 46 46 H 1.08994 * 109.46987 * 304.90517 * 21 19 18 47 47 H 1.08995 * 109.46937 * 64.90374 * 21 19 18 48 48 H 1.09000 * 109.46902 * 184.90313 * 21 19 18 49 49 H 0.96993 * 119.99792 * 185.07832 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0448 -0.7297 1.2468 5 7 1.7607 -2.1644 1.1020 6 6 1.0608 -2.8237 2.0464 7 8 0.5726 -2.2138 2.9782 8 6 0.8867 -4.2855 1.9496 9 6 1.9754 -5.1170 1.6647 10 6 1.7617 -6.4825 1.5847 11 6 0.4894 -6.9888 1.7854 12 7 -0.5232 -6.1797 2.0534 13 6 -0.3736 -4.8709 2.1410 14 8 -1.4448 -4.0879 2.4122 15 6 0.5169 -8.4976 1.6455 16 6 2.0038 -8.8897 1.7748 17 6 2.7265 -7.6118 1.2978 18 6 2.2587 -2.8685 -0.0879 19 6 1.7392 -2.1375 -1.3374 20 1 0.6641 -2.2898 -1.4327 21 6 2.4500 -2.6790 -2.5794 22 7 2.0233 -0.7029 -1.1927 23 6 2.7345 -0.0329 -2.1522 24 1 3.4751 -0.5559 -2.7390 25 6 2.5035 1.3183 -2.3705 26 7 1.4026 1.8795 -1.9170 27 14 3.7550 2.3403 -3.3079 28 1 4.8970 1.4795 -3.7081 29 1 3.1179 2.9123 -4.5212 30 1 4.2448 3.4412 -2.4400 31 1 -0.3633 0.5085 0.8930 32 1 -0.3633 0.5191 -0.8869 33 1 -0.3633 -1.0277 -0.0061 34 1 1.5384 -0.3440 2.1317 35 1 3.1199 -0.5775 1.3421 36 1 2.9609 -4.7027 1.5114 37 1 -1.5929 -3.9370 3.3558 38 1 -0.0669 -8.9617 2.4404 39 1 0.1313 -8.7938 0.6700 40 1 2.2564 -9.1143 2.8110 41 1 2.2390 -9.7353 1.1284 42 1 3.6518 -7.4700 1.8561 43 1 2.9352 -7.6711 0.2296 44 1 3.3488 -2.8651 -0.0855 45 1 1.8937 -3.8956 -0.0847 46 1 3.5285 -2.5952 -2.4462 47 1 2.1820 -3.7255 -2.7241 48 1 2.1458 -2.1019 -3.4527 49 1 1.2058 2.8045 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:32 Heat of formation + Delta-G solvation = -25.848374 kcal Electronic energy + Delta-G solvation = -31991.124435 eV Core-core repulsion = 27918.468264 eV Total energy + Delta-G solvation = -4072.656171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.30446 -40.87936 -39.24378 -38.59869 -36.30981 -35.72302 -34.53340 -33.98049 -32.93733 -30.18144 -29.71202 -28.75713 -27.84200 -27.17597 -25.63780 -24.60147 -23.88274 -22.57905 -21.83385 -21.23061 -20.27298 -19.57545 -18.53483 -18.26353 -17.80348 -17.12703 -16.92393 -16.80106 -16.23267 -16.16189 -15.80603 -15.36474 -15.30097 -15.25282 -14.79854 -14.32124 -14.16580 -14.04836 -13.76075 -13.63758 -13.54368 -13.45586 -13.11418 -12.93217 -12.87458 -12.80325 -12.75016 -12.49627 -12.34391 -12.31045 -12.04027 -12.00014 -11.81920 -11.75174 -11.54878 -11.45489 -11.19524 -10.78012 -10.49890 -10.39721 -9.82026 -9.61274 -8.51574 -7.80827 -5.26326 -0.44506 -0.00016 1.48176 1.52490 1.53116 1.60895 1.92784 2.26764 2.52360 2.57504 3.15101 3.34302 3.39111 3.48256 3.57729 3.83073 3.84381 4.08688 4.13220 4.16672 4.25968 4.29918 4.35862 4.40484 4.56224 4.62489 4.65008 4.66597 4.75899 4.82151 4.84932 4.87459 4.88663 4.90686 4.97900 5.05490 5.11762 5.12364 5.26388 5.28234 5.37044 5.40003 5.43989 5.52772 5.69008 5.71334 5.81973 6.37094 6.42935 6.46249 6.76003 7.01659 7.19681 7.88113 8.42670 9.25869 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.003328 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.002344 B = 8411.572435 C = 9367.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.183 3.817 3 H 0.076 0.924 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.565 3.435 7 O -0.575 6.575 8 C -0.207 4.207 9 C -0.018 4.018 10 C -0.158 4.158 11 C 0.147 3.853 12 N -0.524 5.524 13 C 0.344 3.656 14 O -0.489 6.489 15 C -0.074 4.074 16 C -0.108 4.108 17 C -0.074 4.074 18 C 0.100 3.900 19 C 0.147 3.853 20 H 0.003 0.997 21 C -0.126 4.126 22 N -0.593 5.593 23 C -0.251 4.251 24 H 0.081 0.919 25 C -0.047 4.047 26 N -0.928 5.928 27 Si 0.961 3.039 28 H -0.263 1.263 29 H -0.300 1.300 30 H -0.297 1.297 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.417 0.583 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.044 0.956 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -23.616 6.933 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.076 3.924 3 H 0.093 0.907 4 C -0.019 4.019 5 N -0.318 5.318 6 C 0.354 3.646 7 O -0.456 6.456 8 C -0.213 4.213 9 C -0.043 4.043 10 C -0.160 4.160 11 C 0.009 3.991 12 N -0.244 5.244 13 C 0.164 3.836 14 O -0.299 6.299 15 C -0.111 4.111 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.023 4.023 19 C 0.040 3.960 20 H 0.020 0.980 21 C -0.183 4.183 22 N -0.316 5.316 23 C -0.380 4.380 24 H 0.099 0.901 25 C -0.243 4.243 26 N -0.574 5.574 27 Si 0.790 3.210 28 H -0.188 1.188 29 H -0.228 1.228 30 H -0.224 1.224 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.180 0.820 37 H 0.278 0.722 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.215 -23.360 6.972 24.740 hybrid contribution 0.302 2.180 -0.125 2.205 sum 4.517 -21.180 6.847 22.713 Atomic orbital electron populations 1.21768 0.98783 0.97673 0.99665 1.20533 0.91686 0.95891 0.84290 0.90658 1.22228 1.00319 0.79780 0.99545 1.47931 1.52923 1.10039 1.20859 1.18189 0.77636 0.86824 0.81974 1.90698 1.50093 1.69504 1.35299 1.20797 0.95447 0.94009 1.11079 1.21370 0.98496 0.92241 0.92231 1.21835 0.98372 0.94477 1.01361 1.22696 0.87625 0.98178 0.90621 1.66358 1.36982 1.03847 1.17163 1.18910 0.84721 0.85903 0.94029 1.84646 1.46219 1.66611 1.32383 1.21313 1.00087 0.85043 1.04674 1.22367 0.91087 0.97554 1.03593 1.21129 0.96814 0.89529 1.03685 1.22700 0.99867 0.95841 0.83912 1.21045 0.95481 0.85132 0.94352 0.97967 1.21676 1.00587 0.99906 0.96165 1.44388 1.63055 1.04239 1.19887 1.19517 1.12923 0.91788 1.13818 0.90128 1.25789 0.97907 0.99709 1.00848 1.70117 1.24773 1.12942 1.49611 0.85299 0.79467 0.78812 0.77375 1.18753 1.22784 1.22399 0.94876 0.93673 0.96542 0.90676 0.90900 0.82035 0.72199 0.88849 0.87597 0.89817 0.86980 0.88465 0.87745 0.89314 0.88672 0.91652 0.90661 0.93688 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.96 71.98 0.64 -5.23 16 2 C 0.18 8.69 2.34 45.03 0.11 8.79 16 3 H 0.08 4.05 6.09 -2.38 -0.01 4.04 16 4 C 0.11 4.24 5.97 86.41 0.52 4.75 16 5 N -0.59 -21.31 2.60 -820.93 -2.13 -23.44 16 6 C 0.57 20.79 7.02 86.69 0.61 21.40 16 7 O -0.57 -24.39 15.88 6.25 0.10 -24.29 16 8 C -0.21 -6.29 4.93 -19.93 -0.10 -6.39 16 9 C -0.02 -0.40 7.59 22.73 0.17 -0.23 16 10 C -0.16 -2.83 6.14 -19.59 -0.12 -2.95 16 11 C 0.15 3.08 7.32 42.79 0.31 3.40 16 12 N -0.52 -14.98 10.36 -295.13 -3.06 -18.03 16 13 C 0.34 10.93 7.74 85.16 0.66 11.59 16 14 O -0.49 -16.22 12.57 -77.04 -0.97 -17.19 16 15 C -0.07 -0.84 6.77 30.56 0.21 -0.63 16 16 C -0.11 -0.62 7.08 31.50 0.22 -0.40 16 17 C -0.07 -0.64 6.77 30.49 0.21 -0.43 16 18 C 0.10 3.15 4.75 86.56 0.41 3.56 16 19 C 0.15 5.72 3.24 45.18 0.15 5.87 16 20 H 0.00 0.12 7.38 -2.39 -0.02 0.10 16 21 C -0.13 -4.10 7.95 71.98 0.57 -3.52 16 22 N -0.59 -27.80 2.68 -649.88 -1.74 -29.54 16 23 C -0.25 -12.63 8.49 84.03 0.71 -11.92 16 24 H 0.08 3.86 6.31 -2.91 -0.02 3.84 16 25 C -0.05 -2.49 4.91 84.86 0.42 -2.07 16 26 N -0.93 -52.85 10.15 21.65 0.22 -52.63 16 27 Si 0.96 43.25 29.59 68.60 2.03 45.28 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 2.46 7.13 -2.39 -0.02 2.44 16 33 H 0.02 0.78 7.00 -2.39 -0.02 0.76 16 34 H 0.07 3.13 6.96 -2.39 -0.02 3.11 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.16 2.92 7.23 -2.91 -0.02 2.90 16 37 H 0.42 10.61 9.06 -74.06 -0.67 9.94 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 2.46 8.11 -2.38 -0.02 2.44 16 45 H 0.10 2.57 4.94 -2.39 -0.01 2.56 16 46 H 0.06 2.00 7.59 -2.39 -0.02 1.98 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16 49 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 Total: -1.00 -72.48 379.93 0.46 -72.02 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.31 Total: 22.25 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 5.70 Total: 25.58 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.71 Total: -123.65 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.87 Total: -41.48 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.48 0.46 -72.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.168 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds