Wall clock time and date at job start Wed Apr 1 2020 04:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46626 * 2 1 4 4 C 1.53000 * 109.46819 * 240.00502 * 2 1 3 5 5 C 1.50707 * 109.46896 * 174.99665 * 4 2 1 6 6 O 1.21272 * 120.00013 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.39272 * 119.99983 * 174.85067 * 7 5 4 9 9 C 1.39677 * 119.57311 * 185.31461 * 8 7 5 10 10 C 1.38658 * 119.49259 * 180.02562 * 9 8 7 11 11 C 1.38343 * 118.66838 * 0.02562 * 10 9 8 12 12 C 1.40576 * 119.13455 * 359.97438 * 11 10 9 13 13 C 1.41336 * 119.78834 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99576 * 0.02562 * 13 12 11 15 15 C 1.40026 * 119.99685 * 179.97438 * 13 12 11 16 16 N 1.30741 * 120.00510 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47342 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47081 * 120.00338 * 17 15 13 20 20 H 1.48495 * 109.47017 * 240.00147 * 17 15 13 21 21 N 1.31897 * 119.57716 * 5.04846 * 8 7 5 22 22 N 1.46494 * 109.47467 * 119.99880 * 2 1 3 23 23 C 1.34779 * 120.00332 * 275.00487 * 22 2 1 24 24 O 1.21282 * 119.99884 * 359.97438 * 23 22 2 25 25 C 1.50699 * 120.00054 * 180.02562 * 23 22 2 26 26 C 1.55239 * 110.57833 * 294.87226 * 25 23 22 27 27 C 1.54889 * 102.58653 * 203.34343 * 26 25 23 28 28 C 1.54265 * 104.31556 * 37.92489 * 27 26 25 29 29 C 1.53870 * 106.59736 * 336.32909 * 28 27 26 30 30 H 1.08993 * 109.47476 * 59.99547 * 1 2 3 31 31 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47014 * 299.99770 * 1 2 3 33 33 H 1.08996 * 109.46892 * 294.99447 * 4 2 1 34 34 H 1.08995 * 109.47555 * 55.00250 * 4 2 1 35 35 H 0.96998 * 119.99998 * 354.84938 * 7 5 4 36 36 H 1.08002 * 120.25070 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.65842 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.42784 * 179.97438 * 11 10 9 39 39 H 0.96994 * 120.00599 * 180.02562 * 16 15 13 40 40 H 0.96998 * 119.99815 * 95.00120 * 22 2 1 41 41 H 1.09004 * 110.43577 * 57.45347 * 25 23 22 42 42 H 1.09000 * 110.90400 * 85.04953 * 26 25 23 43 43 H 1.09004 * 110.76339 * 321.56738 * 26 25 23 44 44 H 1.09009 * 110.48290 * 279.18413 * 27 26 25 45 45 H 1.08998 * 110.49025 * 156.67532 * 27 26 25 46 46 H 1.08998 * 110.02836 * 95.61225 * 28 27 26 47 47 H 1.09000 * 110.03528 * 216.99221 * 28 27 26 48 48 H 1.09002 * 110.02975 * 119.28447 * 29 28 27 49 49 H 1.09007 * 110.03162 * 240.66265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 8 4.1449 -0.0203 -0.4447 7 7 4.2149 -1.1802 -2.3344 8 6 5.5898 -0.9917 -2.4517 9 6 6.2605 -1.4872 -3.5723 10 6 7.6294 -1.2989 -3.6871 11 6 8.2930 -0.6214 -2.6798 12 6 7.5615 -0.1469 -1.5771 13 6 8.2255 0.5466 -0.5399 14 1 9.2915 0.7108 -0.5964 15 6 7.5011 1.0216 0.5602 16 7 6.2107 0.8232 0.6283 17 14 8.3787 1.9387 1.9307 18 1 9.8271 2.0308 1.6164 19 1 7.8115 3.3056 2.0538 20 1 8.1949 1.2095 3.2111 21 7 6.2410 -0.3429 -1.5058 22 7 2.0184 -0.6905 1.1961 23 6 2.1471 -0.0182 2.3571 24 8 1.8590 1.1586 2.4115 25 6 2.6501 -0.7285 3.5874 26 6 1.6444 -1.8232 4.0349 27 6 1.9767 -1.9926 5.5382 28 6 2.2831 -0.5611 6.0248 29 6 2.7112 0.2426 4.7844 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 3.7417 -1.7186 -2.9880 36 1 5.7170 -2.0136 -4.3430 37 1 8.1667 -1.6738 -4.5456 38 1 9.3590 -0.4592 -2.7400 39 1 5.7088 1.1525 1.3902 40 1 2.2491 -1.6317 1.1525 41 1 3.6309 -1.1656 3.4002 42 1 1.8163 -2.7538 3.4941 43 1 0.6176 -1.4821 3.9024 44 1 2.8489 -2.6338 5.6662 45 1 1.1209 -2.4027 6.0743 46 1 1.3908 -0.1181 6.4671 47 1 3.0916 -0.5801 6.7556 48 1 2.0266 1.0756 4.6248 49 1 3.7278 0.6144 4.9129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:34 Heat of formation + Delta-G solvation = -35.277219 kcal Electronic energy + Delta-G solvation = -31301.186577 eV Core-core repulsion = 27228.121540 eV Total energy + Delta-G solvation = -4073.065036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.03992 -39.20244 -37.73891 -37.00426 -35.32824 -34.02677 -32.97724 -31.61583 -30.31162 -29.41668 -28.81664 -28.62577 -27.58024 -25.47521 -23.00410 -22.02191 -21.27819 -20.75983 -20.32821 -19.56728 -19.18108 -17.76347 -17.22282 -16.27743 -16.09919 -15.96081 -15.63378 -14.69700 -14.64195 -14.48929 -14.43281 -14.28294 -13.68298 -13.51542 -13.40832 -13.15706 -12.87064 -12.63734 -12.52566 -12.39046 -12.04666 -11.79812 -11.64685 -11.54318 -11.30515 -11.16015 -11.12326 -11.08882 -10.93352 -10.87477 -10.77477 -10.62973 -10.47046 -10.40366 -9.90647 -9.66271 -9.39258 -9.01421 -8.95942 -8.72215 -7.96007 -7.19943 -6.95782 -6.12961 -4.39058 2.78106 3.01890 3.07454 3.19472 3.22348 3.26949 3.45984 3.74676 3.83485 4.07777 4.49064 4.55486 4.72308 4.85790 4.92895 5.09683 5.20980 5.32860 5.40317 5.41452 5.50043 5.53505 5.56761 5.58570 5.62606 5.66263 5.75459 5.76889 5.86284 6.02648 6.04724 6.10660 6.13812 6.17062 6.30122 6.32094 6.40607 6.48811 6.68875 6.80562 6.84137 6.85386 7.24537 7.55652 7.63126 7.81407 7.82099 8.07651 8.20841 8.47824 8.60136 8.75226 9.05976 9.28583 10.25005 10.48462 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004244 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.298635 B = 6595.644842 C = 8666.311111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.096 0.904 4 C -0.150 4.150 5 C 0.461 3.539 6 O -0.395 6.395 7 N -0.669 5.669 8 C 0.372 3.628 9 C -0.359 4.359 10 C -0.037 4.037 11 C -0.307 4.307 12 C 0.271 3.729 13 C -0.424 4.424 14 H 0.082 0.918 15 C 0.058 3.942 16 N -0.650 5.650 17 Si 0.891 3.109 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.472 5.472 22 N -0.710 5.710 23 C 0.533 3.467 24 O -0.544 6.544 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.112 4.112 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.272 0.728 40 H 0.395 0.605 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -6.942 4.256 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.242 3.758 6 O -0.257 6.257 7 N -0.317 5.317 8 C 0.133 3.867 9 C -0.385 4.385 10 C -0.061 4.061 11 C -0.330 4.330 12 C 0.146 3.854 13 C -0.455 4.455 14 H 0.100 0.900 15 C -0.171 4.171 16 N -0.268 5.268 17 Si 0.716 3.284 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.201 1.201 21 N -0.191 5.191 22 N -0.359 5.359 23 C 0.320 3.680 24 O -0.421 6.421 25 C -0.136 4.136 26 C -0.149 4.149 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.150 4.150 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.230 0.770 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.605 -5.199 5.879 15.706 hybrid contribution 0.798 -0.802 -0.835 1.407 sum -12.807 -6.001 5.044 15.015 Atomic orbital electron populations 1.22175 0.95446 1.01741 1.02499 1.20594 0.92647 0.98413 0.82889 0.88600 1.22073 0.94971 1.02455 0.99660 1.20710 0.88910 0.82441 0.83723 1.91190 1.67420 1.33903 1.33214 1.43472 1.06667 1.52544 1.28977 1.18635 0.83539 0.93329 0.91194 1.20492 0.95501 1.20400 1.02131 1.20558 0.93399 0.95674 0.96474 1.21618 0.99109 1.12698 0.99557 1.18382 0.87057 0.89294 0.90704 1.19608 0.95306 1.29025 1.01524 0.90018 1.26149 0.95107 0.96626 0.99248 1.70294 1.05143 1.26496 1.24866 0.86525 0.80731 0.79876 0.81288 1.18623 1.20012 1.20053 1.68705 1.08262 1.17972 1.24205 1.45758 1.67348 1.13501 1.09326 1.20260 0.76543 0.86939 0.84300 1.90644 1.50473 1.15941 1.85065 1.22209 1.00786 0.97100 0.93497 1.22518 0.98654 0.97543 0.96228 1.22346 1.01254 0.97123 0.95355 1.22144 1.01018 0.95226 0.97766 1.22047 1.02742 0.98192 0.92036 0.91779 0.92700 0.92012 0.89494 0.88392 0.76985 0.89232 0.88737 0.88669 0.91665 0.77148 0.88026 0.91064 0.91208 0.91412 0.91677 0.91934 0.91864 0.89908 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.16 2.20 2.13 -67.93 -0.15 2.05 16 3 H 0.10 1.71 7.39 -51.93 -0.38 1.33 16 4 C -0.15 -1.85 5.25 -27.88 -0.15 -1.99 16 5 C 0.46 8.52 7.65 -10.98 -0.08 8.44 16 6 O -0.39 -9.28 11.13 5.56 0.06 -9.21 16 7 N -0.67 -12.42 5.38 -11.40 -0.06 -12.48 16 8 C 0.37 8.86 7.43 -154.98 -1.15 7.71 16 9 C -0.36 -7.99 9.96 -38.89 -0.39 -8.37 16 10 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 11 C -0.31 -7.75 9.83 -38.66 -0.38 -8.13 16 12 C 0.27 7.58 6.55 -85.00 -0.56 7.02 16 13 C -0.42 -11.71 9.14 -37.73 -0.34 -12.05 16 14 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 15 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 16 N -0.65 -17.90 8.99 55.55 0.50 -17.40 16 17 Si 0.89 19.67 29.56 -169.99 -5.02 14.64 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 N -0.47 -13.04 5.74 -10.25 -0.06 -13.10 16 22 N -0.71 -9.96 4.21 -53.81 -0.23 -10.19 16 23 C 0.53 8.59 7.10 -10.98 -0.08 8.51 16 24 O -0.54 -10.73 15.09 5.56 0.08 -10.65 16 25 C -0.11 -1.54 3.25 -89.93 -0.29 -1.83 16 26 C -0.11 -1.13 6.34 -24.55 -0.16 -1.28 16 27 C -0.12 -1.14 6.82 -25.07 -0.17 -1.31 16 28 C -0.12 -1.29 6.80 -25.62 -0.17 -1.46 16 29 C -0.11 -1.50 6.18 -25.62 -0.16 -1.66 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 5.56 8.70 -40.82 -0.36 5.21 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 40 H 0.40 4.83 8.60 -40.82 -0.35 4.48 16 41 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 44 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 1.24 6.85 -51.93 -0.36 0.88 16 49 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -34.33 398.60 -10.84 -45.17 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.75 Total: 12.73 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.37 Total: -5.52 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.15 Total: -53.17 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.15 Total: -19.86 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.33 -10.84 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.896 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds