Wall clock time and date at job start Wed Apr 1 2020 04:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46626 * 2 1 4 4 C 1.53000 * 109.46819 * 240.00502 * 2 1 3 5 5 C 1.50707 * 109.46896 * 174.99665 * 4 2 1 6 6 O 1.21272 * 120.00013 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.39272 * 119.99983 * 174.85067 * 7 5 4 9 9 C 1.39677 * 119.57311 * 185.31461 * 8 7 5 10 10 C 1.38658 * 119.49259 * 180.02562 * 9 8 7 11 11 C 1.38343 * 118.66838 * 0.02562 * 10 9 8 12 12 C 1.40576 * 119.13455 * 359.97438 * 11 10 9 13 13 C 1.41336 * 119.78834 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99576 * 0.02562 * 13 12 11 15 15 C 1.40026 * 119.99685 * 179.97438 * 13 12 11 16 16 N 1.30741 * 120.00510 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47342 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47081 * 120.00338 * 17 15 13 20 20 H 1.48495 * 109.47017 * 240.00147 * 17 15 13 21 21 N 1.31897 * 119.57716 * 5.04846 * 8 7 5 22 22 N 1.46494 * 109.47467 * 119.99880 * 2 1 3 23 23 C 1.34779 * 120.00332 * 275.00487 * 22 2 1 24 24 O 1.21282 * 119.99884 * 359.97438 * 23 22 2 25 25 C 1.50699 * 120.00054 * 180.02562 * 23 22 2 26 26 C 1.55239 * 110.57833 * 294.87226 * 25 23 22 27 27 C 1.54889 * 102.58653 * 203.34343 * 26 25 23 28 28 C 1.54265 * 104.31556 * 37.92489 * 27 26 25 29 29 C 1.53870 * 106.59736 * 336.32909 * 28 27 26 30 30 H 1.08993 * 109.47476 * 59.99547 * 1 2 3 31 31 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47014 * 299.99770 * 1 2 3 33 33 H 1.08996 * 109.46892 * 294.99447 * 4 2 1 34 34 H 1.08995 * 109.47555 * 55.00250 * 4 2 1 35 35 H 0.96998 * 119.99998 * 354.84938 * 7 5 4 36 36 H 1.08002 * 120.25070 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.65842 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.42784 * 179.97438 * 11 10 9 39 39 H 0.96994 * 120.00599 * 180.02562 * 16 15 13 40 40 H 0.96998 * 119.99815 * 95.00120 * 22 2 1 41 41 H 1.09004 * 110.43577 * 57.45347 * 25 23 22 42 42 H 1.09000 * 110.90400 * 85.04953 * 26 25 23 43 43 H 1.09004 * 110.76339 * 321.56738 * 26 25 23 44 44 H 1.09009 * 110.48290 * 279.18413 * 27 26 25 45 45 H 1.08998 * 110.49025 * 156.67532 * 27 26 25 46 46 H 1.08998 * 110.02836 * 95.61225 * 28 27 26 47 47 H 1.09000 * 110.03528 * 216.99221 * 28 27 26 48 48 H 1.09002 * 110.02975 * 119.28447 * 29 28 27 49 49 H 1.09007 * 110.03162 * 240.66265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 8 4.1449 -0.0203 -0.4447 7 7 4.2149 -1.1802 -2.3344 8 6 5.5898 -0.9917 -2.4517 9 6 6.2605 -1.4872 -3.5723 10 6 7.6294 -1.2989 -3.6871 11 6 8.2930 -0.6214 -2.6798 12 6 7.5615 -0.1469 -1.5771 13 6 8.2255 0.5466 -0.5399 14 1 9.2915 0.7108 -0.5964 15 6 7.5011 1.0216 0.5602 16 7 6.2107 0.8232 0.6283 17 14 8.3787 1.9387 1.9307 18 1 9.8271 2.0308 1.6164 19 1 7.8115 3.3056 2.0538 20 1 8.1949 1.2095 3.2111 21 7 6.2410 -0.3429 -1.5058 22 7 2.0184 -0.6905 1.1961 23 6 2.1471 -0.0182 2.3571 24 8 1.8590 1.1586 2.4115 25 6 2.6501 -0.7285 3.5874 26 6 1.6444 -1.8232 4.0349 27 6 1.9767 -1.9926 5.5382 28 6 2.2831 -0.5611 6.0248 29 6 2.7112 0.2426 4.7844 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 3.7417 -1.7186 -2.9880 36 1 5.7170 -2.0136 -4.3430 37 1 8.1667 -1.6738 -4.5456 38 1 9.3590 -0.4592 -2.7400 39 1 5.7088 1.1525 1.3902 40 1 2.2491 -1.6317 1.1525 41 1 3.6309 -1.1656 3.4002 42 1 1.8163 -2.7538 3.4941 43 1 0.6176 -1.4821 3.9024 44 1 2.8489 -2.6338 5.6662 45 1 1.1209 -2.4027 6.0743 46 1 1.3908 -0.1181 6.4671 47 1 3.0916 -0.5801 6.7556 48 1 2.0266 1.0756 4.6248 49 1 3.7278 0.6144 4.9129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:32 Heat of formation + Delta-G solvation = -56.921169 kcal Electronic energy + Delta-G solvation = -31302.125129 eV Core-core repulsion = 27228.121540 eV Total energy + Delta-G solvation = -4074.003589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.30901 -40.72291 -39.34804 -38.12821 -36.61982 -35.78724 -34.78402 -32.79620 -32.19734 -31.08959 -29.84442 -29.55205 -28.79049 -27.35352 -24.31312 -23.54007 -23.02318 -21.91796 -21.30534 -20.90318 -20.49577 -19.55781 -18.42561 -17.91405 -17.54148 -17.24676 -16.64329 -16.47020 -16.25488 -15.85622 -15.70035 -15.54586 -15.47708 -14.90865 -14.63280 -14.34152 -14.24891 -14.05392 -13.79876 -13.77697 -13.42493 -13.03183 -12.83711 -12.81992 -12.72727 -12.70759 -12.55627 -12.32676 -12.16705 -12.09562 -12.00369 -11.90610 -11.77034 -11.69663 -11.48167 -11.33517 -10.84609 -10.65888 -10.52975 -9.94450 -9.87738 -9.04351 -8.77084 -8.06389 -6.41778 0.93495 1.25826 1.34277 1.46307 1.48056 1.77375 2.21522 2.23170 2.36861 2.41765 2.99299 3.53360 3.63322 3.74438 3.84031 3.88321 4.07337 4.24321 4.30305 4.37826 4.44666 4.50651 4.52363 4.58162 4.60668 4.69954 4.74226 4.77046 4.78900 4.84410 4.93394 4.95223 4.96840 5.06529 5.10170 5.13398 5.19491 5.24336 5.27061 5.33303 5.35415 5.44798 5.68236 5.69868 5.89574 5.94220 6.15384 6.40189 6.65950 6.77903 6.89685 7.10276 7.40240 7.81867 8.36296 8.53447 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004244 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.298635 B = 6595.644842 C = 8666.311111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.157 3.843 3 H 0.044 0.956 4 C -0.129 4.129 5 C 0.450 3.550 6 O -0.450 6.450 7 N -0.656 5.656 8 C 0.351 3.649 9 C -0.346 4.346 10 C -0.036 4.036 11 C -0.334 4.334 12 C 0.239 3.761 13 C -0.466 4.466 14 H 0.082 0.918 15 C 0.016 3.984 16 N -0.677 5.677 17 Si 0.960 3.040 18 H -0.251 1.251 19 H -0.278 1.278 20 H -0.269 1.269 21 N -0.505 5.505 22 N -0.700 5.700 23 C 0.523 3.477 24 O -0.591 6.591 25 C -0.116 4.116 26 C -0.101 4.101 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.421 0.579 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.263 0.737 40 H 0.406 0.594 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -9.680 3.107 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.052 3.948 3 H 0.062 0.938 4 C -0.169 4.169 5 C 0.234 3.766 6 O -0.315 6.315 7 N -0.306 5.306 8 C 0.112 3.888 9 C -0.371 4.371 10 C -0.060 4.060 11 C -0.357 4.357 12 C 0.114 3.886 13 C -0.497 4.497 14 H 0.100 0.900 15 C -0.210 4.210 16 N -0.295 5.295 17 Si 0.782 3.218 18 H -0.174 1.174 19 H -0.204 1.204 20 H -0.194 1.194 21 N -0.225 5.225 22 N -0.350 5.350 23 C 0.311 3.689 24 O -0.472 6.472 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.154 4.154 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.259 0.741 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.241 0.759 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.509 -8.009 4.665 18.068 hybrid contribution 1.349 -0.017 -0.708 1.523 sum -14.161 -8.026 3.957 16.751 Atomic orbital electron populations 1.22056 0.92471 1.03599 1.02387 1.20625 0.94756 0.95963 0.83478 0.93785 1.22022 0.89690 1.05274 0.99928 1.21841 0.91371 0.80866 0.82537 1.91206 1.69179 1.35956 1.35197 1.43478 1.04792 1.52606 1.29756 1.19189 0.85755 0.92740 0.91141 1.21004 0.95599 1.18491 1.02041 1.21034 0.93998 0.94267 0.96746 1.21783 0.99611 1.14154 1.00117 1.18825 0.88012 0.89988 0.91822 1.19855 0.95596 1.31246 1.02971 0.89990 1.26891 0.95777 0.97176 1.01194 1.70506 1.06267 1.27764 1.25008 0.85476 0.79936 0.78090 0.78275 1.17435 1.20401 1.19406 1.68681 1.08377 1.19267 1.26154 1.45741 1.66411 1.13872 1.08928 1.20788 0.75983 0.86552 0.85569 1.90613 1.52757 1.17952 1.85898 1.22232 1.01122 0.97976 0.92357 1.22517 0.97500 0.96814 0.97074 1.22358 1.02434 0.96172 0.94594 1.22130 1.01607 0.95711 0.96255 1.22048 1.01156 0.98225 0.93993 0.89890 0.89692 0.94207 0.85016 0.85187 0.74150 0.84989 0.84786 0.88174 0.92631 0.75921 0.89222 0.89091 0.90981 0.90850 0.89415 0.91039 0.91124 0.92129 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.48 71.98 0.68 -2.16 16 2 C 0.16 4.23 2.13 44.99 0.10 4.32 16 3 H 0.04 1.66 7.39 -2.39 -0.02 1.65 16 4 C -0.13 -2.78 5.25 29.85 0.16 -2.62 16 5 C 0.45 16.25 7.65 87.66 0.67 16.92 16 6 O -0.45 -21.90 11.13 -3.01 -0.03 -21.93 16 7 N -0.66 -23.05 5.38 -308.37 -1.66 -24.71 16 8 C 0.35 16.43 7.43 133.25 0.99 17.42 16 9 C -0.35 -14.42 9.96 22.72 0.23 -14.19 16 10 C -0.04 -1.57 10.15 22.40 0.23 -1.35 16 11 C -0.33 -17.03 9.83 22.87 0.22 -16.80 16 12 C 0.24 13.88 6.55 40.19 0.26 14.15 16 13 C -0.47 -27.00 9.14 23.47 0.21 -26.78 16 14 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 15 C 0.02 0.87 5.50 85.29 0.47 1.34 16 16 N -0.68 -39.56 8.99 21.84 0.20 -39.37 16 17 Si 0.96 42.60 29.56 68.60 2.03 44.63 16 18 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 N -0.51 -28.62 5.74 -186.36 -1.07 -29.69 16 22 N -0.70 -19.72 4.21 -442.54 -1.86 -21.59 16 23 C 0.52 17.79 7.10 87.66 0.62 18.41 16 24 O -0.59 -25.22 15.09 -3.04 -0.05 -25.27 16 25 C -0.12 -3.22 3.25 -10.35 -0.03 -3.26 16 26 C -0.10 -1.91 6.34 32.01 0.20 -1.70 16 27 C -0.12 -1.95 6.82 31.67 0.22 -1.73 16 28 C -0.12 -2.42 6.80 31.32 0.21 -2.20 16 29 C -0.12 -3.31 6.18 31.31 0.19 -3.11 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 10.15 8.70 -92.71 -0.81 9.35 16 36 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.26 15.07 8.29 -92.71 -0.77 14.30 16 40 H 0.41 9.49 8.60 -92.71 -0.80 8.69 16 41 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 44 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.98 6.85 -2.39 -0.02 1.96 16 49 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -83.15 398.60 2.56 -80.59 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.63 Total: 40.69 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.63 Total: -3.36 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.39 Total: -115.35 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.08 Total: -47.20 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -83.15 2.56 -80.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.668 kcal (2) G-P(sol) polarization free energy of solvation -83.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds