Wall clock time and date at job start Wed Apr 1 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.63715 * 2 1 4 4 C 1.54319 * 110.71677 * 236.85627 * 2 1 3 5 5 N 1.47020 * 107.27178 * 219.26182 * 4 2 1 6 6 C 1.34775 * 125.64789 * 178.97347 * 5 4 2 7 7 O 1.21346 * 119.99969 * 179.97438 * 6 5 4 8 8 C 1.49457 * 120.00178 * 359.97438 * 6 5 4 9 9 O 1.21346 * 119.99853 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99729 * 179.97438 * 8 6 5 11 11 C 1.46498 * 119.99638 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.47225 * 179.97438 * 11 10 8 13 13 C 1.38635 * 119.75110 * 269.72700 * 12 11 10 14 14 C 1.37620 * 120.24811 * 179.71578 * 13 12 11 15 15 C 1.40719 * 119.74277 * 0.57842 * 14 13 12 16 16 C 1.41401 * 120.24242 * 179.67585 * 15 14 13 17 17 H 1.08000 * 119.99661 * 24.40458 * 16 15 14 18 18 C 1.39945 * 120.00064 * 204.39919 * 16 15 14 19 19 N 1.30823 * 119.99748 * 17.85378 * 18 16 15 20 20 Si 1.86793 * 120.00006 * 197.85017 * 18 16 15 21 21 H 1.48505 * 109.47113 * 90.00395 * 20 18 16 22 22 H 1.48504 * 109.47274 * 209.99880 * 20 18 16 23 23 H 1.48496 * 109.47402 * 330.00172 * 20 18 16 24 24 C 1.40708 * 119.51217 * 359.69844 * 15 14 13 25 25 C 1.37622 * 119.74881 * 0.02562 * 24 15 14 26 26 C 1.47425 * 108.70444 * 358.94923 * 5 4 2 27 27 C 1.54910 * 104.83140 * 24.12189 * 26 5 4 28 28 H 1.09004 * 111.00572 * 81.06890 * 27 26 5 29 29 C 1.53005 * 111.00390 * 204.92116 * 27 26 5 30 30 N 1.46896 * 109.46833 * 287.19295 * 29 27 26 31 31 H 1.08994 * 109.47123 * 179.30459 * 1 2 3 32 32 H 1.09001 * 109.47017 * 299.29879 * 1 2 3 33 33 H 1.09000 * 109.46976 * 59.29415 * 1 2 3 34 34 H 1.08995 * 109.88682 * 338.68905 * 4 2 1 35 35 H 1.09000 * 109.87882 * 99.85055 * 4 2 1 36 36 H 0.97001 * 120.00680 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47364 * 300.00319 * 11 10 8 38 38 H 1.09003 * 109.47293 * 60.00097 * 11 10 8 39 39 H 1.08001 * 119.87514 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.13013 * 180.27827 * 14 13 12 41 41 H 0.97001 * 119.99867 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.13071 * 180.02562 * 24 15 14 43 43 H 1.07997 * 119.87723 * 179.97438 * 25 24 15 44 44 H 1.08993 * 110.36955 * 142.96550 * 26 5 4 45 45 H 1.09003 * 110.36306 * 265.17688 * 26 5 4 46 46 H 1.08993 * 109.47024 * 47.19502 * 29 27 26 47 47 H 1.08998 * 109.46999 * 167.19829 * 29 27 26 48 48 H 1.00908 * 110.99872 * 56.04898 * 30 29 27 49 49 H 1.00900 * 110.99687 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2471 -1.5461 -0.7427 6 6 3.9956 -2.3767 -1.4951 7 8 4.9444 -2.9516 -1.0034 8 6 3.6571 -2.5899 -2.9352 9 8 2.7080 -2.0154 -3.4268 10 7 4.4060 -3.4201 -3.6877 11 6 4.0738 -3.6295 -5.0990 12 6 5.0578 -4.5942 -5.7090 13 6 6.2178 -4.1139 -6.2969 14 6 7.1263 -4.9862 -6.8517 15 6 6.8681 -6.3694 -6.8315 16 6 7.7909 -7.2745 -7.4046 17 1 8.8306 -6.9980 -7.4994 18 6 7.3571 -8.5286 -7.8489 19 7 6.0844 -8.7421 -8.0637 20 14 8.5952 -9.8977 -8.1354 21 1 8.7692 -10.6776 -6.8836 22 1 8.1022 -10.7936 -9.2122 23 1 9.8983 -9.3104 -8.5379 24 6 5.6847 -6.8450 -6.2373 25 6 4.7931 -5.9549 -5.6834 26 6 3.4674 -1.2456 0.6837 27 6 2.0828 -0.7949 1.2124 28 1 1.4514 -1.6547 1.4367 29 6 2.2315 0.1082 2.4386 30 7 2.6414 -0.6997 3.5949 31 1 -0.3633 -1.0275 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 1.3140 -1.4753 -1.5781 35 1 2.3711 -0.0992 -1.9991 36 1 5.1649 -3.8791 -3.2948 37 1 3.0665 -4.0384 -5.1785 38 1 4.1224 -2.6780 -5.6288 39 1 6.4114 -3.0516 -6.3158 40 1 8.0314 -4.6103 -7.3052 41 1 5.7837 -9.6113 -8.3721 42 1 5.4767 -7.9046 -6.2158 43 1 3.8840 -6.3176 -5.2271 44 1 3.8032 -2.1378 1.2119 45 1 4.1970 -0.4432 0.7940 46 1 2.9869 0.8685 2.2403 47 1 1.2777 0.5907 2.6522 48 1 3.4904 -1.2083 3.3980 49 1 2.7468 -0.1256 4.4179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884730760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:27 Heat of formation + Delta-G solvation = -78.192776 kcal Electronic energy + Delta-G solvation = -29131.541591 eV Core-core repulsion = 25056.615596 eV Total energy + Delta-G solvation = -4074.925995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.93909 -40.32275 -39.45886 -39.01484 -36.54085 -35.68519 -35.08119 -33.66396 -32.16628 -31.20529 -30.68618 -28.97894 -27.61335 -26.84952 -25.66439 -23.94429 -22.93235 -22.29227 -21.86053 -21.19824 -20.97146 -19.26384 -19.02124 -18.18257 -17.53891 -17.24113 -16.91666 -16.65278 -16.30560 -15.96121 -15.90481 -15.63298 -15.40211 -15.13360 -14.98086 -14.86735 -14.36989 -14.27792 -14.17306 -13.85738 -13.64306 -13.55145 -13.49333 -13.34344 -13.14021 -12.98427 -12.78250 -12.67205 -12.50028 -12.40398 -12.17338 -11.79755 -11.71723 -11.51965 -11.49941 -11.31984 -11.07189 -10.69606 -10.27324 -9.90468 -9.59063 -9.42447 -9.31935 -8.69224 -6.39424 0.28775 0.74169 1.11359 1.26405 1.37814 1.50686 1.52497 2.07017 2.18435 2.43614 2.73332 3.24413 3.43321 3.44879 3.62588 3.71795 3.98387 4.09626 4.16609 4.26705 4.29951 4.34980 4.47160 4.48523 4.61823 4.64036 4.65718 4.70374 4.71476 4.77651 4.93347 5.01659 5.02455 5.06342 5.12397 5.12988 5.19604 5.32037 5.32797 5.40639 5.45775 5.65931 5.85067 5.97958 6.06333 6.15800 6.21000 6.24775 6.33359 6.58220 6.59283 6.65444 6.88773 6.89200 6.97919 8.27452 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.001774 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.092092 B =15783.636991 C =16279.890900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.108 3.892 5 N -0.588 5.588 6 C 0.517 3.483 7 O -0.549 6.549 8 C 0.503 3.497 9 O -0.538 6.538 10 N -0.684 5.684 11 C 0.193 3.807 12 C -0.234 4.234 13 C -0.066 4.066 14 C -0.244 4.244 15 C 0.086 3.914 16 C -0.495 4.495 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.194 4.194 25 C -0.081 4.081 26 C 0.102 3.898 27 C -0.086 4.086 28 H 0.086 0.914 29 C 0.079 3.921 30 N -0.863 5.863 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.342 0.658 49 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 16.845 18.351 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.121 0.879 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.300 3.700 7 O -0.427 6.427 8 C 0.284 3.716 9 O -0.416 6.416 10 N -0.336 5.336 11 C 0.071 3.929 12 C -0.236 4.236 13 C -0.085 4.085 14 C -0.264 4.264 15 C 0.083 3.917 16 C -0.524 4.524 17 H 0.096 0.904 18 C -0.181 4.181 19 N -0.444 5.444 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.213 4.213 25 C -0.100 4.100 26 C -0.020 4.020 27 C -0.106 4.106 28 H 0.105 0.895 29 C -0.052 4.052 30 N -0.394 5.394 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.155 0.845 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.539 16.360 17.988 26.501 hybrid contribution 1.841 -0.677 -0.455 2.014 sum -8.698 15.684 17.533 25.080 Atomic orbital electron populations 1.21735 0.92304 1.02331 1.03213 1.22317 0.97529 0.99519 0.91643 0.87858 1.22435 0.86374 0.94908 0.97729 1.48330 1.29572 1.42292 1.11941 1.19930 0.82872 0.80037 0.87201 1.90759 1.29214 1.48884 1.73855 1.20098 0.83532 0.80830 0.87182 1.90708 1.28585 1.48520 1.73796 1.46282 1.31658 1.43998 1.11617 1.19962 0.96702 0.97772 0.78426 1.19181 0.99115 0.93211 1.12083 1.20715 0.93232 0.98326 0.96235 1.21162 1.01823 0.93150 1.10231 1.18040 0.92536 0.92402 0.88705 1.19914 0.96477 0.99718 1.36288 0.90445 1.26789 0.97687 1.01508 0.92077 1.69868 1.17553 1.25020 1.31978 0.85189 0.78667 0.76890 0.78913 1.18743 1.19156 1.18144 1.21279 0.97491 0.98821 1.03740 1.20782 0.97910 0.93110 0.98199 1.22639 0.99003 1.01386 0.78923 1.22461 0.94201 0.99369 0.94559 0.89542 1.21681 1.01485 0.93441 0.88608 1.58726 1.41179 1.32904 1.06621 0.92988 0.90429 0.91610 0.91109 0.90800 0.75163 0.91240 0.90655 0.86395 0.88261 0.89948 0.88069 0.87616 0.90759 0.90004 0.94102 0.89269 0.84536 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.15 71.98 0.66 -0.61 16 2 C -0.09 -1.01 3.01 -9.60 -0.03 -1.04 16 3 H 0.10 0.85 8.04 -2.39 -0.02 0.84 16 4 C 0.11 2.01 5.08 86.73 0.44 2.45 16 5 N -0.59 -13.48 3.33 -813.39 -2.71 -16.18 16 6 C 0.52 15.32 7.91 87.27 0.69 16.01 16 7 O -0.55 -18.84 16.73 -3.23 -0.05 -18.89 16 8 C 0.50 15.75 7.86 87.27 0.69 16.44 16 9 O -0.54 -17.59 14.12 -3.23 -0.05 -17.64 16 10 N -0.68 -22.10 5.54 -468.14 -2.59 -24.69 16 11 C 0.19 6.51 5.79 85.63 0.50 7.00 16 12 C -0.23 -9.48 5.27 -19.67 -0.10 -9.58 16 13 C -0.07 -2.79 9.67 22.22 0.21 -2.57 16 14 C -0.24 -11.72 9.80 22.73 0.22 -11.49 16 15 C 0.09 4.58 5.58 -21.29 -0.12 4.46 16 16 C -0.50 -26.43 9.05 23.46 0.21 -26.22 16 17 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 18 C 0.04 1.76 5.14 85.26 0.44 2.19 16 19 N -0.82 -42.37 10.95 21.83 0.24 -42.13 16 20 Si 0.98 37.80 29.59 68.60 2.03 39.83 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 24 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 25 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 26 C 0.10 1.72 5.85 86.86 0.51 2.23 16 27 C -0.09 -1.02 2.70 -9.40 -0.03 -1.05 16 28 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 29 C 0.08 0.64 6.29 86.31 0.54 1.18 16 30 N -0.86 -7.90 9.62 -186.73 -1.80 -9.70 16 31 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.51 7.24 -2.39 -0.02 1.49 16 35 H 0.07 1.48 7.70 -2.39 -0.02 1.46 16 36 H 0.41 13.66 7.94 -92.71 -0.74 12.92 16 37 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 38 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 39 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 41 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 42 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 43 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 44 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 45 H 0.08 1.21 7.91 -2.39 -0.02 1.19 16 46 H 0.04 0.27 7.96 -2.39 -0.02 0.25 16 47 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.34 3.15 8.49 -89.69 -0.76 2.39 16 49 H 0.35 2.06 9.08 -89.69 -0.81 1.24 16 Total: -1.00 -62.95 403.40 -1.00 -63.95 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -1.32 Total: 39.32 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.25 Total: -13.88 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -6.86 Total: -92.69 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.10 Total: -36.53 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -62.95 -1.00 -63.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884730760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.240 kcal (2) G-P(sol) polarization free energy of solvation -62.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds