Wall clock time and date at job start Wed Apr 1 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47041 * 2 1 4 4 N 1.46504 * 109.47316 * 119.99454 * 2 1 3 5 5 C 1.34775 * 119.99951 * 275.00610 * 4 2 1 6 6 O 1.21353 * 120.00379 * 359.97438 * 5 4 2 7 7 C 1.49368 * 119.99957 * 179.97438 * 5 4 2 8 8 O 1.21361 * 119.99936 * 359.97438 * 7 5 4 9 9 N 1.34776 * 120.00375 * 179.97438 * 7 5 4 10 10 C 1.39105 * 120.00056 * 185.58519 * 9 7 5 11 11 C 1.39703 * 119.58282 * 18.92088 * 10 9 7 12 12 C 1.38651 * 119.49529 * 180.02562 * 11 10 9 13 13 C 1.38346 * 118.67523 * 359.74792 * 12 11 10 14 14 C 1.40600 * 119.13134 * 0.47347 * 13 12 11 15 15 C 1.41338 * 119.78385 * 179.79450 * 14 13 12 16 16 H 1.07998 * 119.99731 * 8.66444 * 15 14 13 17 17 C 1.40026 * 119.99608 * 188.65806 * 15 14 13 18 18 N 1.30743 * 119.99845 * 195.96896 * 17 15 14 19 19 Si 1.86802 * 120.00180 * 15.97885 * 17 15 14 20 20 H 1.48509 * 109.46745 * 269.99166 * 19 17 15 21 21 H 1.48498 * 109.47140 * 29.99551 * 19 17 15 22 22 H 1.48502 * 109.47007 * 149.99823 * 19 17 15 23 23 N 1.31938 * 119.57611 * 198.90011 * 10 9 7 24 24 C 1.52998 * 109.47289 * 239.99683 * 2 1 3 25 25 C 1.53008 * 109.46985 * 180.02562 * 24 2 1 26 26 C 1.52998 * 109.46985 * 179.97438 * 25 24 2 27 27 C 1.52999 * 109.47338 * 59.99927 * 26 25 24 28 28 C 1.53008 * 109.47142 * 299.99976 * 27 26 25 29 29 C 1.52996 * 109.47047 * 60.00230 * 24 2 1 30 30 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47776 * 300.00095 * 1 2 3 32 32 H 1.09001 * 109.47333 * 60.00441 * 1 2 3 33 33 H 0.96999 * 119.99700 * 95.00000 * 4 2 1 34 34 H 0.96994 * 119.99598 * 5.58365 * 9 7 5 35 35 H 1.08007 * 120.25106 * 359.97438 * 11 10 9 36 36 H 1.08006 * 120.66214 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.43869 * 180.26716 * 13 12 11 38 38 H 0.96996 * 119.99975 * 354.94172 * 18 17 15 39 39 H 1.08994 * 109.47354 * 299.99715 * 24 2 1 40 40 H 1.08999 * 109.47132 * 299.99742 * 25 24 2 41 41 H 1.09003 * 109.47056 * 59.99938 * 25 24 2 42 42 H 1.09006 * 109.47338 * 300.00028 * 26 25 24 43 43 H 1.09003 * 109.47352 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47320 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47160 * 60.00024 * 27 26 25 46 46 H 1.08999 * 109.47132 * 300.00065 * 28 27 26 47 47 H 1.08999 * 109.47036 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47286 * 299.99568 * 29 24 2 49 49 H 1.08999 * 109.47466 * 60.00015 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8587 1.1595 2.4115 7 6 2.6443 -0.7222 3.5769 8 8 2.9322 -1.8999 3.5227 9 7 2.7735 -0.0497 4.7378 10 6 3.3450 -0.6726 5.8426 11 6 4.1294 -1.8143 5.6615 12 6 4.6978 -2.4339 6.7640 13 6 4.4725 -1.8947 8.0180 14 6 3.6698 -0.7464 8.1352 15 6 3.4271 -0.1866 9.4101 16 1 3.9660 -0.5519 10.2717 17 6 2.4880 0.8418 9.5558 18 7 2.4786 1.5694 10.6421 19 14 1.2483 1.1740 8.1985 20 1 1.8126 2.1617 7.2438 21 1 0.9480 -0.0915 7.4818 22 1 -0.0009 1.7160 8.7908 23 7 3.1395 -0.1772 7.0480 24 6 2.0400 -0.7213 -1.2492 25 6 3.5700 -0.7218 -1.2488 26 6 4.0801 -1.4437 -2.4976 27 6 3.5706 -0.7227 -3.7473 28 6 2.0406 -0.7222 -3.7477 29 6 1.5300 -0.0001 -2.4984 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.4679 0.8685 4.8028 35 1 4.2913 -2.2117 4.6703 36 1 5.3072 -3.3178 6.6458 37 1 4.9049 -2.3518 8.8958 38 1 3.0725 1.3509 11.3772 39 1 1.6767 -1.7489 -1.2491 40 1 3.9337 0.3057 -1.2486 41 1 3.9330 -1.2359 -0.3587 42 1 3.7164 -2.4713 -2.4974 43 1 5.1701 -1.4437 -2.4976 44 1 3.9336 -1.2373 -4.6370 45 1 3.9343 0.3048 -3.7476 46 1 1.6769 -1.7498 -3.7473 47 1 1.6776 -0.2082 -4.6377 48 1 0.4401 -0.0001 -2.4985 49 1 1.8934 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889960287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:24 Heat of formation + Delta-G solvation = -67.618837 kcal Electronic energy + Delta-G solvation = -30053.997538 eV Core-core repulsion = 25979.530064 eV Total energy + Delta-G solvation = -4074.467474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.96912 -39.77131 -38.76312 -37.89090 -35.79929 -34.66589 -33.53938 -32.14766 -31.15024 -31.07456 -29.73413 -29.14392 -25.98430 -25.16651 -23.82757 -22.81660 -21.92046 -21.66888 -20.86174 -20.36074 -19.80451 -18.78683 -18.17782 -17.02304 -16.50209 -16.12042 -15.79957 -15.54995 -15.12697 -14.85666 -14.58812 -14.50204 -14.19962 -14.12737 -13.89938 -13.65508 -13.52688 -13.15763 -12.97671 -12.68037 -12.58820 -12.41757 -12.27553 -11.99372 -11.90028 -11.82417 -11.69537 -11.48527 -11.25795 -10.97513 -10.82272 -10.76051 -10.48286 -10.41641 -10.39338 -10.04736 -9.76892 -9.40604 -9.24466 -9.11086 -8.58742 -7.95648 -7.51499 -7.31094 -4.80550 1.29891 2.28477 2.50727 2.61770 3.31283 3.49831 3.60945 3.63878 3.90460 4.12205 4.31514 4.32703 4.34763 4.47563 4.55780 4.67680 4.81100 4.85112 4.98946 5.04472 5.13955 5.14418 5.22085 5.26289 5.39320 5.48180 5.48514 5.61621 5.66339 5.76145 5.77148 5.77498 5.77934 5.83531 5.92579 5.97529 6.01595 6.07411 6.16626 6.35100 6.39701 6.47049 6.89604 7.03601 7.13817 7.39001 7.44312 7.51158 7.68149 7.75721 8.03404 8.12035 8.30776 8.59781 9.36894 9.94589 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.002384 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.108613 B =11741.297658 C =12749.117940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 H 0.093 0.907 4 N -0.696 5.696 5 C 0.514 3.486 6 O -0.514 6.514 7 C 0.507 3.493 8 O -0.496 6.496 9 N -0.623 5.623 10 C 0.378 3.622 11 C -0.309 4.309 12 C -0.036 4.036 13 C -0.272 4.272 14 C 0.273 3.727 15 C -0.477 4.477 16 H 0.085 0.915 17 C 0.050 3.950 18 N -0.800 5.800 19 Si 1.139 2.861 20 H -0.284 1.284 21 H -0.280 1.280 22 H -0.324 1.324 23 N -0.591 5.591 24 C -0.094 4.094 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.113 4.113 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.419 0.581 35 H 0.137 0.863 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.285 0.715 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -3.995 -26.510 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.111 0.889 4 N -0.350 5.350 5 C 0.294 3.706 6 O -0.389 6.389 7 C 0.288 3.712 8 O -0.370 6.370 9 N -0.269 5.269 10 C 0.147 3.853 11 C -0.334 4.334 12 C -0.061 4.061 13 C -0.294 4.294 14 C 0.149 3.851 15 C -0.509 4.509 16 H 0.103 0.897 17 C -0.173 4.173 18 N -0.421 5.421 19 Si 0.972 3.028 20 H -0.212 1.212 21 H -0.208 1.208 22 H -0.257 1.257 23 N -0.315 5.315 24 C -0.113 4.113 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.156 4.156 29 C -0.151 4.151 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.256 0.744 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.045 -2.217 -26.746 27.010 hybrid contribution 1.893 -1.763 0.702 2.680 sum -1.152 -3.980 -26.044 26.372 Atomic orbital electron populations 1.22257 0.94773 1.02554 1.02983 1.21145 0.94369 0.97624 0.82852 0.88924 1.45803 1.65611 1.14919 1.08667 1.20032 0.79031 0.86951 0.84545 1.90780 1.48199 1.15235 1.84727 1.19973 0.80032 0.86922 0.84302 1.90689 1.47071 1.14775 1.84474 1.42922 1.57564 1.17468 1.08901 1.18017 0.91121 0.90993 0.85155 1.21461 1.09692 1.01826 1.00416 1.20905 0.95630 0.97023 0.92503 1.21654 1.09824 1.01221 0.96726 1.18194 0.88125 0.88469 0.90313 1.20684 1.20054 1.16991 0.93189 0.89675 1.27662 0.98269 0.90051 1.01305 1.70614 1.34454 1.31669 1.05377 0.82194 0.71769 0.77036 0.71843 1.21153 1.20761 1.25663 1.66202 1.31270 1.36684 0.97361 1.21458 0.96124 1.00185 0.93484 1.21615 0.94396 1.01334 0.98179 1.21528 1.00362 0.99388 0.94399 1.21557 0.95684 1.00834 0.97797 1.21534 0.95728 1.00769 0.97568 1.21613 1.00675 0.99491 0.93309 0.92176 0.91756 0.91022 0.75144 0.74359 0.84512 0.87460 0.87526 0.90377 0.90356 0.91712 0.91542 0.91937 0.91943 0.92185 0.91994 0.91948 0.91953 0.91250 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.13 37.15 0.34 -1.02 16 2 C 0.14 1.24 2.16 -67.93 -0.15 1.10 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 N -0.70 -7.36 4.38 -54.26 -0.24 -7.60 16 5 C 0.51 7.35 7.85 -11.62 -0.09 7.25 16 6 O -0.51 -8.34 16.15 5.49 0.09 -8.25 16 7 C 0.51 8.67 7.73 -11.62 -0.09 8.58 16 8 O -0.50 -8.97 13.27 5.49 0.07 -8.89 16 9 N -0.62 -12.24 5.39 -11.83 -0.06 -12.30 16 10 C 0.38 8.74 7.50 -155.10 -1.16 7.57 16 11 C -0.31 -6.81 8.83 -38.88 -0.34 -7.16 16 12 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 13 C -0.27 -6.40 9.83 -38.65 -0.38 -6.78 16 14 C 0.27 7.15 6.27 -84.99 -0.53 6.61 16 15 C -0.48 -12.91 9.51 -37.73 -0.36 -13.27 16 16 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 17 C 0.05 1.34 5.51 -17.35 -0.10 1.25 16 18 N -0.80 -21.64 13.65 55.55 0.76 -20.88 16 19 Si 1.14 28.01 25.93 -169.99 -4.41 23.61 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -7.03 6.55 56.52 0.37 -6.66 16 22 H -0.32 -7.82 7.11 56.52 0.40 -7.42 16 23 N -0.59 -15.09 5.08 -10.28 -0.05 -15.14 16 24 C -0.09 -0.61 1.82 -90.62 -0.17 -0.78 16 25 C -0.12 -0.84 5.05 -26.73 -0.13 -0.98 16 26 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 27 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 28 C -0.12 -0.62 5.92 -26.70 -0.16 -0.78 16 29 C -0.11 -0.64 4.86 -26.70 -0.13 -0.77 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.41 3.90 7.86 -40.82 -0.32 3.58 16 34 H 0.42 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.14 2.86 5.33 -52.50 -0.28 2.58 16 36 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 37 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.53 7.44 -51.93 -0.39 0.14 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.35 6.43 -51.93 -0.33 0.02 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -29.86 390.41 -9.61 -39.48 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.49 Total: 6.20 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.17 Total: -2.09 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.40 Total: -55.93 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.16 Total: -17.14 kcal Atomic # 14 Polarization: 28.01 SS G_CDS: -4.41 Total: 23.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.86 -9.61 -39.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889960287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.140 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds