Wall clock time and date at job start Wed Apr 1 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47041 * 2 1 4 4 N 1.46504 * 109.47316 * 119.99454 * 2 1 3 5 5 C 1.34775 * 119.99951 * 275.00610 * 4 2 1 6 6 O 1.21353 * 120.00379 * 359.97438 * 5 4 2 7 7 C 1.49368 * 119.99957 * 179.97438 * 5 4 2 8 8 O 1.21361 * 119.99936 * 359.97438 * 7 5 4 9 9 N 1.34776 * 120.00375 * 179.97438 * 7 5 4 10 10 C 1.39105 * 120.00056 * 185.58519 * 9 7 5 11 11 C 1.39703 * 119.58282 * 18.92088 * 10 9 7 12 12 C 1.38651 * 119.49529 * 180.02562 * 11 10 9 13 13 C 1.38346 * 118.67523 * 359.74792 * 12 11 10 14 14 C 1.40600 * 119.13134 * 0.47347 * 13 12 11 15 15 C 1.41338 * 119.78385 * 179.79450 * 14 13 12 16 16 H 1.07998 * 119.99731 * 8.66444 * 15 14 13 17 17 C 1.40026 * 119.99608 * 188.65806 * 15 14 13 18 18 N 1.30743 * 119.99845 * 195.96896 * 17 15 14 19 19 Si 1.86802 * 120.00180 * 15.97885 * 17 15 14 20 20 H 1.48509 * 109.46745 * 269.99166 * 19 17 15 21 21 H 1.48498 * 109.47140 * 29.99551 * 19 17 15 22 22 H 1.48502 * 109.47007 * 149.99823 * 19 17 15 23 23 N 1.31938 * 119.57611 * 198.90011 * 10 9 7 24 24 C 1.52998 * 109.47289 * 239.99683 * 2 1 3 25 25 C 1.53008 * 109.46985 * 180.02562 * 24 2 1 26 26 C 1.52998 * 109.46985 * 179.97438 * 25 24 2 27 27 C 1.52999 * 109.47338 * 59.99927 * 26 25 24 28 28 C 1.53008 * 109.47142 * 299.99976 * 27 26 25 29 29 C 1.52996 * 109.47047 * 60.00230 * 24 2 1 30 30 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47776 * 300.00095 * 1 2 3 32 32 H 1.09001 * 109.47333 * 60.00441 * 1 2 3 33 33 H 0.96999 * 119.99700 * 95.00000 * 4 2 1 34 34 H 0.96994 * 119.99598 * 5.58365 * 9 7 5 35 35 H 1.08007 * 120.25106 * 359.97438 * 11 10 9 36 36 H 1.08006 * 120.66214 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.43869 * 180.26716 * 13 12 11 38 38 H 0.96996 * 119.99975 * 354.94172 * 18 17 15 39 39 H 1.08994 * 109.47354 * 299.99715 * 24 2 1 40 40 H 1.08999 * 109.47132 * 299.99742 * 25 24 2 41 41 H 1.09003 * 109.47056 * 59.99938 * 25 24 2 42 42 H 1.09006 * 109.47338 * 300.00028 * 26 25 24 43 43 H 1.09003 * 109.47352 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47320 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47160 * 60.00024 * 27 26 25 46 46 H 1.08999 * 109.47132 * 300.00065 * 28 27 26 47 47 H 1.08999 * 109.47036 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47286 * 299.99568 * 29 24 2 49 49 H 1.08999 * 109.47466 * 60.00015 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8587 1.1595 2.4115 7 6 2.6443 -0.7222 3.5769 8 8 2.9322 -1.8999 3.5227 9 7 2.7735 -0.0497 4.7378 10 6 3.3450 -0.6726 5.8426 11 6 4.1294 -1.8143 5.6615 12 6 4.6978 -2.4339 6.7640 13 6 4.4725 -1.8947 8.0180 14 6 3.6698 -0.7464 8.1352 15 6 3.4271 -0.1866 9.4101 16 1 3.9660 -0.5519 10.2717 17 6 2.4880 0.8418 9.5558 18 7 2.4786 1.5694 10.6421 19 14 1.2483 1.1740 8.1985 20 1 1.8126 2.1617 7.2438 21 1 0.9480 -0.0915 7.4818 22 1 -0.0009 1.7160 8.7908 23 7 3.1395 -0.1772 7.0480 24 6 2.0400 -0.7213 -1.2492 25 6 3.5700 -0.7218 -1.2488 26 6 4.0801 -1.4437 -2.4976 27 6 3.5706 -0.7227 -3.7473 28 6 2.0406 -0.7222 -3.7477 29 6 1.5300 -0.0001 -2.4984 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.4679 0.8685 4.8028 35 1 4.2913 -2.2117 4.6703 36 1 5.3072 -3.3178 6.6458 37 1 4.9049 -2.3518 8.8958 38 1 3.0725 1.3509 11.3772 39 1 1.6767 -1.7489 -1.2491 40 1 3.9337 0.3057 -1.2486 41 1 3.9330 -1.2359 -0.3587 42 1 3.7164 -2.4713 -2.4974 43 1 5.1701 -1.4437 -2.4976 44 1 3.9336 -1.2373 -4.6370 45 1 3.9343 0.3048 -3.7476 46 1 1.6769 -1.7498 -3.7473 47 1 1.6776 -0.2082 -4.6377 48 1 0.4401 -0.0001 -2.4985 49 1 1.8934 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889960287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:22 Heat of formation + Delta-G solvation = -84.560824 kcal Electronic energy + Delta-G solvation = -30054.732198 eV Core-core repulsion = 25979.530064 eV Total energy + Delta-G solvation = -4075.202134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.29331 -40.95112 -39.91655 -39.24798 -36.83473 -36.15423 -35.38642 -33.05072 -32.88725 -31.60568 -31.50386 -29.77296 -27.61458 -26.65070 -24.72303 -23.67372 -23.34645 -23.02504 -21.66640 -21.50234 -20.75756 -20.34151 -19.74322 -18.45549 -17.82852 -17.34831 -16.96020 -16.84474 -16.48528 -16.14472 -15.92033 -15.46822 -15.30366 -15.15138 -14.94501 -14.88805 -14.53119 -14.38793 -14.27477 -14.19780 -13.76912 -13.65120 -13.35488 -13.19541 -12.98201 -12.86189 -12.51660 -12.40711 -12.25513 -12.21897 -11.96442 -11.91942 -11.79379 -11.63311 -11.30976 -11.09862 -11.04134 -10.93983 -10.66552 -10.43186 -10.31064 -9.88650 -9.35796 -9.30139 -6.81996 -0.07865 0.68885 0.82674 1.05959 1.51569 1.62579 1.92751 1.99274 2.36030 2.39250 2.59851 3.20229 3.53551 3.54094 3.78827 3.85038 4.03188 4.15681 4.24156 4.31665 4.32723 4.42804 4.49412 4.58858 4.61591 4.65873 4.66618 4.67213 4.68249 4.73550 4.81787 4.91006 5.05181 5.13914 5.17901 5.23776 5.27992 5.30042 5.31063 5.32940 5.35291 5.38560 5.44473 5.50120 5.61436 5.64785 5.67645 5.87568 5.97999 6.20296 6.35465 6.52810 6.65999 6.78547 7.47593 7.91936 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.002384 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.108613 B =11741.297658 C =12749.117940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.080 0.920 4 N -0.675 5.675 5 C 0.522 3.478 6 O -0.536 6.536 7 C 0.511 3.489 8 O -0.503 6.503 9 N -0.629 5.629 10 C 0.365 3.635 11 C -0.301 4.301 12 C -0.027 4.027 13 C -0.285 4.285 14 C 0.257 3.743 15 C -0.509 4.509 16 H 0.074 0.926 17 C 0.024 3.976 18 N -0.823 5.823 19 Si 1.169 2.831 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.319 1.319 23 N -0.609 5.609 24 C -0.084 4.084 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.112 4.112 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.420 0.580 34 H 0.421 0.579 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.284 0.716 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -5.454 -29.855 30.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.099 0.901 4 N -0.328 5.328 5 C 0.301 3.699 6 O -0.413 6.413 7 C 0.293 3.707 8 O -0.377 6.377 9 N -0.276 5.276 10 C 0.134 3.866 11 C -0.325 4.325 12 C -0.051 4.051 13 C -0.307 4.307 14 C 0.132 3.868 15 C -0.541 4.541 16 H 0.092 0.908 17 C -0.194 4.194 18 N -0.446 5.446 19 Si 1.000 3.000 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.251 1.251 23 N -0.334 5.334 24 C -0.103 4.103 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.149 4.149 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.258 0.742 34 H 0.259 0.741 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.217 -3.699 -30.147 30.543 hybrid contribution 2.035 -1.468 1.499 2.923 sum -1.183 -5.167 -28.647 29.133 Atomic orbital electron populations 1.22240 0.93908 1.03191 1.02899 1.21345 0.94966 0.97138 0.82607 0.90141 1.45825 1.63820 1.15190 1.07994 1.19511 0.79374 0.86535 0.84473 1.90786 1.49631 1.15977 1.84876 1.20485 0.79047 0.86812 0.84345 1.90657 1.47225 1.15171 1.84634 1.42997 1.57996 1.17736 1.08851 1.18376 0.91359 0.91563 0.85316 1.21854 1.08187 1.00967 1.01491 1.21357 0.94842 0.97733 0.91194 1.21851 1.09732 1.00729 0.98376 1.18409 0.88783 0.89395 0.90247 1.20668 1.21393 1.18448 0.93618 0.90814 1.28270 0.98960 0.90105 1.02082 1.70626 1.35539 1.32490 1.05900 0.81784 0.71052 0.76491 0.70713 1.20670 1.21801 1.25115 1.66142 1.31729 1.37375 0.98149 1.21410 0.95589 1.00590 0.92704 1.21609 0.94870 1.00787 0.98335 1.21514 1.00245 0.99561 0.94198 1.21562 0.96137 1.00546 0.97658 1.21526 0.95243 1.01064 0.97551 1.21618 1.01291 0.99177 0.92854 0.91151 0.94026 0.88965 0.74201 0.74095 0.82877 0.83231 0.86291 0.90503 0.89237 0.92647 0.92460 0.91466 0.92224 0.91597 0.92446 0.91483 0.91224 0.90204 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.13 71.98 0.66 -1.64 16 2 C 0.14 2.17 2.16 44.99 0.10 2.27 16 3 H 0.08 1.49 7.58 -2.38 -0.02 1.48 16 4 N -0.68 -12.97 4.38 -443.95 -1.94 -14.92 16 5 C 0.52 14.18 7.85 87.24 0.68 14.87 16 6 O -0.54 -16.92 16.15 -3.26 -0.05 -16.97 16 7 C 0.51 16.68 7.73 87.24 0.67 17.35 16 8 O -0.50 -17.00 13.27 -3.28 -0.04 -17.04 16 9 N -0.63 -24.14 5.39 -309.71 -1.67 -25.81 16 10 C 0.36 16.44 7.50 133.30 1.00 17.44 16 11 C -0.30 -12.51 8.83 22.72 0.20 -12.31 16 12 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 13 C -0.28 -13.07 9.83 22.87 0.22 -12.85 16 14 C 0.26 13.50 6.27 40.20 0.25 13.75 16 15 C -0.51 -28.27 9.51 23.47 0.22 -28.05 16 16 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 17 C 0.02 1.35 5.51 85.29 0.47 1.82 16 18 N -0.82 -45.72 13.65 21.84 0.30 -45.43 16 19 Si 1.17 57.70 25.93 68.60 1.78 59.48 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.29 -14.60 6.55 99.48 0.65 -13.95 16 22 H -0.32 -15.24 7.11 99.48 0.71 -14.53 16 23 N -0.61 -31.02 5.08 -186.43 -0.95 -31.97 16 24 C -0.08 -0.89 1.82 -10.79 -0.02 -0.91 16 25 C -0.12 -1.48 5.05 30.60 0.15 -1.33 16 26 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16 27 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 28 C -0.12 -0.90 5.92 30.62 0.18 -0.72 16 29 C -0.11 -0.96 4.86 30.61 0.15 -0.81 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.42 6.91 7.86 -92.71 -0.73 6.18 16 34 H 0.42 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.15 5.90 5.33 -3.18 -0.02 5.88 16 36 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 37 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.28 15.20 8.73 -92.71 -0.81 14.39 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.81 7.44 -2.39 -0.02 0.80 16 42 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.08 0.54 6.43 -2.39 -0.02 0.53 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -64.22 390.41 2.35 -61.87 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.61 Total: 24.73 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.54 Total: 6.06 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -4.26 Total: -118.12 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.10 Total: -34.01 kcal Atomic # 14 Polarization: 57.70 SS G_CDS: 1.78 Total: 59.48 kcal Total: -64.22 2.35 -61.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889960287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.688 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds