Wall clock time and date at job start Wed Apr 1 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 C 1.52997 * 109.47053 * 120.00376 * 2 1 3 5 5 H 1.08995 * 109.47250 * 305.74643 * 4 2 1 6 6 C 1.53006 * 109.46904 * 185.74786 * 4 2 1 7 7 N 1.46498 * 109.47298 * 65.75251 * 4 2 1 8 8 C 1.34780 * 119.99967 * 237.97762 * 7 4 2 9 9 O 1.21355 * 119.99703 * 5.88721 * 8 7 4 10 10 C 1.49365 * 120.00028 * 185.88881 * 8 7 4 11 11 O 1.21365 * 120.00044 * 5.61608 * 10 8 7 12 12 N 1.34779 * 120.00036 * 185.61198 * 10 8 7 13 13 C 1.39118 * 119.99878 * 185.27371 * 12 10 8 14 14 C 1.39707 * 119.57485 * 185.39514 * 13 12 10 15 15 C 1.38648 * 119.49144 * 179.97438 * 14 13 12 16 16 C 1.38351 * 118.67112 * 0.02562 * 15 14 13 17 17 C 1.40586 * 119.13735 * 359.97438 * 16 15 14 18 18 C 1.41345 * 119.78840 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99358 * 359.97438 * 18 17 16 20 20 C 1.40031 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.30741 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46783 * 89.99966 * 22 20 18 24 24 H 1.48496 * 109.47056 * 210.00191 * 22 20 18 25 25 H 1.48498 * 109.47084 * 329.99942 * 22 20 18 26 26 N 1.31936 * 119.57900 * 5.11956 * 13 12 10 27 27 C 1.46503 * 120.00423 * 57.97196 * 7 4 2 28 28 C 1.52999 * 117.49621 * 70.10851 * 27 7 4 29 29 C 1.53004 * 117.49600 * 1.45299 * 27 7 4 30 30 H 1.08998 * 109.46927 * 59.99480 * 1 2 3 31 31 H 1.09002 * 109.46879 * 299.99903 * 1 2 3 32 32 H 1.09003 * 109.46834 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46879 * 240.00097 * 2 1 3 34 34 H 1.09006 * 109.46269 * 55.21335 * 3 2 1 35 35 H 1.08995 * 109.46694 * 175.20707 * 3 2 1 36 36 H 1.08996 * 109.47145 * 295.21702 * 3 2 1 37 37 H 1.09001 * 109.46749 * 185.08743 * 6 4 2 38 38 H 1.09000 * 109.46926 * 305.09314 * 6 4 2 39 39 H 1.09004 * 109.46804 * 65.09537 * 6 4 2 40 40 H 0.96995 * 120.00038 * 5.27373 * 12 10 8 41 41 H 1.07993 * 120.25607 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.66609 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.43273 * 179.97438 * 16 15 14 44 44 H 0.96999 * 119.99986 * 179.97438 * 21 20 18 45 45 H 1.08994 * 115.55432 * 215.78616 * 27 7 4 46 46 H 1.09002 * 117.49836 * 0.02562 * 28 27 7 47 47 H 1.09003 * 117.49509 * 145.01928 * 28 27 7 48 48 H 1.08996 * 117.50413 * 214.98040 * 29 27 7 49 49 H 1.09008 * 117.49589 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5952 -0.2704 2.1362 6 6 3.5633 -0.5974 1.3235 7 7 1.6680 -2.1367 1.1819 8 6 0.9206 -2.6843 2.1607 9 8 0.4663 -1.9836 3.0412 10 6 0.6515 -4.1535 2.1616 11 8 1.1880 -4.8692 1.3414 12 7 -0.1871 -4.6844 3.0735 13 6 -0.3534 -6.0637 3.1455 14 6 -1.3072 -6.5988 4.0149 15 6 -1.4719 -7.9737 4.0849 16 6 -0.6798 -8.7786 3.2856 17 6 0.2624 -8.1797 2.4312 18 6 1.0784 -8.9889 1.6083 19 1 0.9771 -10.0637 1.6376 20 6 2.0187 -8.3971 0.7560 21 7 2.1415 -7.0959 0.7210 22 14 3.0975 -9.4667 -0.3309 23 1 2.4223 -9.6867 -1.6351 24 1 4.3997 -8.7893 -0.5557 25 1 3.3281 -10.7743 0.3340 26 7 0.3878 -6.8495 2.3880 27 6 2.1083 -2.9569 0.0507 28 6 3.5976 -3.2958 -0.0387 29 6 2.9826 -2.2858 -1.0106 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6083 1.9804 0.8441 35 1 3.1267 1.4436 0.0859 36 1 1.7484 1.9310 -0.9297 37 1 3.9352 -1.1862 2.1620 38 1 4.0034 -0.9661 0.3969 39 1 3.8362 0.4485 1.4645 40 1 -0.6746 -4.1048 3.6795 41 1 -1.9116 -5.9465 4.6277 42 1 -2.2038 -8.4076 4.7500 43 1 -0.7839 -9.8531 3.3177 44 1 2.7930 -6.6860 0.1309 45 1 1.3990 -3.7128 -0.2862 46 1 4.2497 -2.9089 0.7443 47 1 3.8681 -4.2747 -0.4347 48 1 2.8487 -2.6004 -2.0455 49 1 3.2304 -1.2340 -0.8668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890134831.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:15 Heat of formation + Delta-G solvation = 39.361760 kcal Electronic energy + Delta-G solvation = -31979.080559 eV Core-core repulsion = 27909.252112 eV Total energy + Delta-G solvation = -4069.828447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.82751 -39.18010 -37.92965 -37.18424 -35.60470 -34.30252 -33.17956 -32.56001 -30.39504 -30.28228 -29.19429 -27.22843 -25.80919 -24.87951 -23.45521 -22.60205 -22.11436 -21.57636 -20.86415 -19.72751 -19.28486 -18.01187 -17.01995 -16.54093 -16.09004 -15.64247 -15.24068 -14.75839 -14.63327 -14.51088 -14.43545 -14.25248 -13.74344 -13.60802 -13.39279 -13.33517 -13.15583 -12.88448 -12.47555 -12.33776 -12.21788 -12.02647 -11.97948 -11.59077 -11.29426 -11.20731 -11.19601 -11.05074 -11.00826 -10.81117 -10.69090 -10.66755 -10.52967 -10.38350 -10.00144 -9.97413 -9.77199 -9.09154 -8.76670 -8.42798 -8.02696 -7.32848 -7.03086 -6.22646 -4.45063 1.92790 2.65532 2.81755 3.08274 3.12384 3.15200 3.23085 3.81423 3.88261 4.00979 4.07913 4.51300 4.76543 4.80108 4.86722 4.90711 4.99883 5.10747 5.12449 5.22675 5.34398 5.36361 5.52454 5.58236 5.63862 5.73561 5.76994 5.81555 5.89828 5.97348 6.03047 6.06885 6.11441 6.15578 6.22042 6.29370 6.31967 6.43888 6.54448 6.59866 6.76621 6.79781 7.16925 7.30518 7.47300 7.53131 7.76522 7.87084 8.04698 8.17852 8.37958 8.64662 8.94078 9.02981 10.14840 10.40802 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.004026 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.011443 B = 6952.774097 C = 8770.182722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.147 4.147 4 C 0.139 3.861 5 H 0.101 0.899 6 C -0.182 4.182 7 N -0.555 5.555 8 C 0.512 3.488 9 O -0.535 6.535 10 C 0.467 3.533 11 O -0.378 6.378 12 N -0.641 5.641 13 C 0.370 3.630 14 C -0.349 4.349 15 C -0.036 4.036 16 C -0.301 4.301 17 C 0.273 3.727 18 C -0.424 4.424 19 H 0.082 0.918 20 C 0.061 3.939 21 N -0.661 5.661 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.474 5.474 27 C 0.090 3.910 28 C -0.176 4.176 29 C -0.215 4.215 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.148 0.852 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 14.265 -4.063 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C -0.205 4.205 4 C 0.036 3.964 5 H 0.119 0.881 6 C -0.239 4.239 7 N -0.287 5.287 8 C 0.296 3.704 9 O -0.412 6.412 10 C 0.243 3.757 11 O -0.241 6.241 12 N -0.289 5.289 13 C 0.132 3.868 14 C -0.375 4.375 15 C -0.060 4.060 16 C -0.324 4.324 17 C 0.147 3.853 18 C -0.455 4.455 19 H 0.101 0.899 20 C -0.167 4.167 21 N -0.280 5.280 22 Si 0.720 3.280 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 N -0.193 5.193 27 C -0.014 4.014 28 C -0.215 4.215 29 C -0.252 4.252 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.166 0.834 46 H 0.112 0.888 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.661 14.674 -4.913 15.902 hybrid contribution -0.375 -0.518 0.552 0.845 sum 3.286 14.156 -4.361 15.173 Atomic orbital electron populations 1.21757 0.94726 1.02073 1.01390 1.21852 0.96791 0.96363 0.99028 1.21898 1.01207 0.95474 1.01940 1.21180 0.95118 0.80279 0.99810 0.88114 1.22675 0.95323 1.02426 1.03504 1.47269 1.50519 1.09510 1.21403 1.20848 0.78420 0.89674 0.81477 1.90677 1.50351 1.63382 1.36748 1.20056 0.83097 0.87735 0.84774 1.91138 1.42396 1.58767 1.31782 1.43022 1.43855 1.05929 1.36081 1.18534 0.92195 0.83168 0.92891 1.20516 1.09449 0.95447 1.12062 1.20581 0.96431 0.92816 0.96210 1.21650 1.05586 0.98446 1.06745 1.18348 0.89631 0.87548 0.89732 1.19570 1.14540 0.94032 1.17347 0.89947 1.26126 0.97766 0.95284 0.97559 1.70303 1.23602 1.08761 1.25317 0.86522 0.79586 0.81143 0.80758 1.19643 1.20310 1.18772 1.68619 1.24229 1.04092 1.22389 1.22024 0.94634 0.96309 0.88388 1.23393 0.96504 1.00109 1.01465 1.23944 1.05373 0.99507 0.96359 0.92848 0.92761 0.92611 0.88786 0.92588 0.92157 0.92497 0.92120 0.90452 0.91239 0.75467 0.88800 0.88426 0.88438 0.91772 0.83447 0.88774 0.87837 0.88205 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.09 37.16 0.34 -1.22 16 2 C -0.12 -1.21 2.14 -90.62 -0.19 -1.40 16 3 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 4 C 0.14 1.66 2.13 -67.93 -0.14 1.51 16 5 H 0.10 1.36 6.91 -51.93 -0.36 1.00 16 6 C -0.18 -1.85 7.24 37.16 0.27 -1.58 16 7 N -0.56 -8.12 2.20 -159.12 -0.35 -8.47 16 8 C 0.51 9.07 7.72 -11.62 -0.09 8.98 16 9 O -0.53 -9.94 15.85 5.49 0.09 -9.85 16 10 C 0.47 9.63 7.71 -11.62 -0.09 9.54 16 11 O -0.38 -8.61 9.36 5.48 0.05 -8.55 16 12 N -0.64 -13.37 5.36 -11.83 -0.06 -13.44 16 13 C 0.37 8.99 7.41 -155.09 -1.15 7.84 16 14 C -0.35 -7.86 9.96 -38.88 -0.39 -8.25 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 17 C 0.27 7.43 6.55 -85.00 -0.56 6.87 16 18 C -0.42 -11.25 9.14 -37.73 -0.34 -11.60 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 20 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 21 N -0.66 -16.94 9.09 55.55 0.50 -16.44 16 22 Si 0.90 18.41 29.56 -169.99 -5.02 13.39 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 N -0.47 -12.86 5.74 -10.28 -0.06 -12.92 16 27 C 0.09 1.30 4.59 -67.93 -0.31 0.99 16 28 C -0.18 -2.36 9.69 -26.70 -0.26 -2.62 16 29 C -0.21 -2.35 7.80 -26.69 -0.21 -2.56 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.72 7.78 -51.93 -0.40 0.31 16 33 H 0.09 0.92 4.40 -51.93 -0.23 0.69 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.42 6.17 -51.93 -0.32 0.10 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.70 7.99 -51.93 -0.41 0.29 16 38 H 0.08 0.74 3.93 -51.93 -0.20 0.54 16 39 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 40 H 0.41 7.43 8.20 -40.82 -0.33 7.10 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 44 H 0.27 6.38 8.29 -40.82 -0.34 6.04 16 45 H 0.15 2.51 6.33 -51.93 -0.33 2.18 16 46 H 0.09 1.24 6.49 -51.93 -0.34 0.90 16 47 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.12 1.09 3.38 -51.92 -0.18 0.92 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -29.67 381.26 -9.58 -39.25 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.80 Total: 13.19 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.68 Total: -1.90 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.03 Total: -51.26 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.14 Total: -18.41 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.67 -9.58 -39.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890134831.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.609 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds