Wall clock time and date at job start Wed Apr 1 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 C 1.52997 * 109.47053 * 120.00376 * 2 1 3 5 5 H 1.08995 * 109.47250 * 305.74643 * 4 2 1 6 6 C 1.53006 * 109.46904 * 185.74786 * 4 2 1 7 7 N 1.46498 * 109.47298 * 65.75251 * 4 2 1 8 8 C 1.34780 * 119.99967 * 237.97762 * 7 4 2 9 9 O 1.21355 * 119.99703 * 5.88721 * 8 7 4 10 10 C 1.49365 * 120.00028 * 185.88881 * 8 7 4 11 11 O 1.21365 * 120.00044 * 5.61608 * 10 8 7 12 12 N 1.34779 * 120.00036 * 185.61198 * 10 8 7 13 13 C 1.39118 * 119.99878 * 185.27371 * 12 10 8 14 14 C 1.39707 * 119.57485 * 185.39514 * 13 12 10 15 15 C 1.38648 * 119.49144 * 179.97438 * 14 13 12 16 16 C 1.38351 * 118.67112 * 0.02562 * 15 14 13 17 17 C 1.40586 * 119.13735 * 359.97438 * 16 15 14 18 18 C 1.41345 * 119.78840 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99358 * 359.97438 * 18 17 16 20 20 C 1.40031 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.30741 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46783 * 89.99966 * 22 20 18 24 24 H 1.48496 * 109.47056 * 210.00191 * 22 20 18 25 25 H 1.48498 * 109.47084 * 329.99942 * 22 20 18 26 26 N 1.31936 * 119.57900 * 5.11956 * 13 12 10 27 27 C 1.46503 * 120.00423 * 57.97196 * 7 4 2 28 28 C 1.52999 * 117.49621 * 70.10851 * 27 7 4 29 29 C 1.53004 * 117.49600 * 1.45299 * 27 7 4 30 30 H 1.08998 * 109.46927 * 59.99480 * 1 2 3 31 31 H 1.09002 * 109.46879 * 299.99903 * 1 2 3 32 32 H 1.09003 * 109.46834 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46879 * 240.00097 * 2 1 3 34 34 H 1.09006 * 109.46269 * 55.21335 * 3 2 1 35 35 H 1.08995 * 109.46694 * 175.20707 * 3 2 1 36 36 H 1.08996 * 109.47145 * 295.21702 * 3 2 1 37 37 H 1.09001 * 109.46749 * 185.08743 * 6 4 2 38 38 H 1.09000 * 109.46926 * 305.09314 * 6 4 2 39 39 H 1.09004 * 109.46804 * 65.09537 * 6 4 2 40 40 H 0.96995 * 120.00038 * 5.27373 * 12 10 8 41 41 H 1.07993 * 120.25607 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.66609 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.43273 * 179.97438 * 16 15 14 44 44 H 0.96999 * 119.99986 * 179.97438 * 21 20 18 45 45 H 1.08994 * 115.55432 * 215.78616 * 27 7 4 46 46 H 1.09002 * 117.49836 * 0.02562 * 28 27 7 47 47 H 1.09003 * 117.49509 * 145.01928 * 28 27 7 48 48 H 1.08996 * 117.50413 * 214.98040 * 29 27 7 49 49 H 1.09008 * 117.49589 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5952 -0.2704 2.1362 6 6 3.5633 -0.5974 1.3235 7 7 1.6680 -2.1367 1.1819 8 6 0.9206 -2.6843 2.1607 9 8 0.4663 -1.9836 3.0412 10 6 0.6515 -4.1535 2.1616 11 8 1.1880 -4.8692 1.3414 12 7 -0.1871 -4.6844 3.0735 13 6 -0.3534 -6.0637 3.1455 14 6 -1.3072 -6.5988 4.0149 15 6 -1.4719 -7.9737 4.0849 16 6 -0.6798 -8.7786 3.2856 17 6 0.2624 -8.1797 2.4312 18 6 1.0784 -8.9889 1.6083 19 1 0.9771 -10.0637 1.6376 20 6 2.0187 -8.3971 0.7560 21 7 2.1415 -7.0959 0.7210 22 14 3.0975 -9.4667 -0.3309 23 1 2.4223 -9.6867 -1.6351 24 1 4.3997 -8.7893 -0.5557 25 1 3.3281 -10.7743 0.3340 26 7 0.3878 -6.8495 2.3880 27 6 2.1083 -2.9569 0.0507 28 6 3.5976 -3.2958 -0.0387 29 6 2.9826 -2.2858 -1.0106 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6083 1.9804 0.8441 35 1 3.1267 1.4436 0.0859 36 1 1.7484 1.9310 -0.9297 37 1 3.9352 -1.1862 2.1620 38 1 4.0034 -0.9661 0.3969 39 1 3.8362 0.4485 1.4645 40 1 -0.6746 -4.1048 3.6795 41 1 -1.9116 -5.9465 4.6277 42 1 -2.2038 -8.4076 4.7500 43 1 -0.7839 -9.8531 3.3177 44 1 2.7930 -6.6860 0.1309 45 1 1.3990 -3.7128 -0.2862 46 1 4.2497 -2.9089 0.7443 47 1 3.8681 -4.2747 -0.4347 48 1 2.8487 -2.6004 -2.0455 49 1 3.2304 -1.2340 -0.8668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890134831.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:14 Heat of formation + Delta-G solvation = 23.956316 kcal Electronic energy + Delta-G solvation = -31979.748590 eV Core-core repulsion = 27909.252112 eV Total energy + Delta-G solvation = -4070.496478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.14004 -40.73993 -39.42858 -38.77000 -36.58737 -36.02964 -34.94683 -33.78459 -32.25996 -31.25700 -31.01745 -28.04860 -27.59810 -26.28748 -24.60034 -23.74816 -23.50286 -23.20525 -22.35070 -20.92858 -20.60787 -19.68051 -18.59921 -18.07394 -17.69660 -16.95566 -16.46037 -16.35413 -16.29143 -15.89767 -15.59494 -15.47062 -15.42414 -14.85306 -14.75229 -14.60176 -14.55389 -14.18387 -13.82465 -13.75494 -13.33378 -13.16587 -12.90574 -12.87082 -12.74382 -12.57314 -12.49782 -12.41908 -12.30475 -12.21494 -12.13836 -11.88755 -11.75878 -11.65219 -11.52933 -11.45293 -10.91423 -10.89188 -10.31977 -9.92226 -9.60381 -9.16979 -8.88035 -8.07421 -6.41191 0.37937 1.03323 1.27339 1.31898 1.42926 1.53048 1.55896 2.28061 2.32348 2.43100 2.91991 2.99863 3.32888 3.67541 3.83446 3.92384 4.02584 4.02991 4.07892 4.15871 4.32908 4.35353 4.44535 4.57284 4.65637 4.68002 4.79185 4.80843 4.81916 4.87229 4.93570 4.94262 4.95959 4.99839 5.03279 5.09559 5.17968 5.22193 5.27822 5.31304 5.36279 5.44915 5.52872 5.64528 5.73656 5.90354 6.01479 6.13725 6.27928 6.50673 6.70883 6.84228 7.05155 7.31615 8.25969 8.56889 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.004026 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.011443 B = 6952.774097 C = 8770.182722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.133 3.867 5 H 0.086 0.914 6 C -0.176 4.176 7 N -0.540 5.540 8 C 0.514 3.486 9 O -0.549 6.549 10 C 0.456 3.544 11 O -0.401 6.401 12 N -0.637 5.637 13 C 0.350 3.650 14 C -0.346 4.346 15 C -0.033 4.033 16 C -0.324 4.324 17 C 0.239 3.761 18 C -0.460 4.460 19 H 0.085 0.915 20 C 0.017 3.983 21 N -0.687 5.687 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.270 1.270 25 H -0.261 1.261 26 N -0.503 5.503 27 C 0.064 3.936 28 C -0.183 4.183 29 C -0.172 4.172 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.421 0.579 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.274 0.726 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 16.119 -5.028 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.201 4.201 4 C 0.031 3.969 5 H 0.104 0.896 6 C -0.234 4.234 7 N -0.270 5.270 8 C 0.297 3.703 9 O -0.428 6.428 10 C 0.234 3.766 11 O -0.264 6.264 12 N -0.287 5.287 13 C 0.112 3.888 14 C -0.371 4.371 15 C -0.057 4.057 16 C -0.347 4.347 17 C 0.113 3.887 18 C -0.491 4.491 19 H 0.103 0.897 20 C -0.209 4.209 21 N -0.306 5.306 22 Si 0.793 3.207 23 H -0.192 1.192 24 H -0.195 1.195 25 H -0.185 1.185 26 N -0.223 5.223 27 C -0.040 4.040 28 C -0.221 4.221 29 C -0.209 4.209 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.259 0.741 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.125 0.875 44 H 0.085 0.915 45 H 0.134 0.866 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.134 0.866 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.560 16.569 -5.876 18.162 hybrid contribution -0.753 -1.031 0.907 1.566 sum 3.808 15.538 -4.969 16.752 Atomic orbital electron populations 1.21753 0.95703 1.00450 1.01978 1.21833 0.95924 0.97817 0.97777 1.21887 1.02071 0.93436 1.02713 1.21486 0.96571 0.78303 1.00507 0.89589 1.22652 0.93401 1.03992 1.03306 1.47304 1.48847 1.10653 1.20204 1.20269 0.79513 0.88164 0.82404 1.90663 1.51525 1.63062 1.37572 1.20676 0.82528 0.89198 0.84215 1.91141 1.42965 1.59887 1.32430 1.43032 1.44184 1.04991 1.36474 1.18974 0.92456 0.84300 0.93030 1.20936 1.08692 0.96188 1.11311 1.21021 0.96260 0.92693 0.95745 1.21842 1.06089 0.99325 1.07396 1.18831 0.90805 0.88179 0.90844 1.19885 1.16039 0.94323 1.18858 0.89686 1.26908 0.98725 0.96662 0.98592 1.70436 1.24084 1.10229 1.25880 0.85369 0.77657 0.79136 0.78532 1.19194 1.19452 1.18462 1.68579 1.25589 1.04428 1.23723 1.21848 0.94631 0.97496 0.89997 1.23358 0.95462 1.00563 1.02705 1.24040 1.00866 0.99986 0.96005 0.91059 0.93395 0.95309 0.88196 0.92691 0.90649 0.91101 0.93821 0.89464 0.88494 0.74142 0.85589 0.84470 0.87473 0.91491 0.86603 0.88442 0.89251 0.86588 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.09 71.98 0.65 -2.28 16 2 C -0.11 -2.01 2.14 -10.79 -0.02 -2.03 16 3 C -0.14 -1.73 8.84 71.98 0.64 -1.09 16 4 C 0.13 3.00 2.13 44.99 0.10 3.10 16 5 H 0.09 2.25 6.91 -2.39 -0.02 2.23 16 6 C -0.18 -3.16 7.24 71.98 0.52 -2.64 16 7 N -0.54 -15.91 2.20 -775.69 -1.70 -17.62 16 8 C 0.51 18.80 7.72 87.24 0.67 19.47 16 9 O -0.55 -20.86 15.85 -3.26 -0.05 -20.91 16 10 C 0.46 19.69 7.71 87.24 0.67 20.37 16 11 O -0.40 -19.24 9.36 -3.29 -0.03 -19.28 16 12 N -0.64 -27.44 5.36 -309.69 -1.66 -29.10 16 13 C 0.35 17.44 7.41 133.30 0.99 18.42 16 14 C -0.35 -15.37 9.96 22.72 0.23 -15.14 16 15 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 16 C -0.32 -16.22 9.83 22.87 0.22 -15.99 16 17 C 0.24 13.51 6.55 40.20 0.26 13.78 16 18 C -0.46 -25.38 9.14 23.47 0.21 -25.17 16 19 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 20 C 0.02 0.89 5.50 85.29 0.47 1.36 16 21 N -0.69 -36.69 9.09 21.84 0.20 -36.50 16 22 Si 0.97 38.70 29.56 68.60 2.03 40.73 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 N -0.50 -28.40 5.74 -186.42 -1.07 -29.47 16 27 C 0.06 1.87 4.59 44.99 0.21 2.08 16 28 C -0.18 -4.83 9.69 30.62 0.30 -4.54 16 29 C -0.17 -3.42 7.80 30.62 0.24 -3.18 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 0.74 7.78 -2.39 -0.02 0.72 16 33 H 0.10 1.63 4.40 -2.39 -0.01 1.62 16 34 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.71 6.17 -2.39 -0.01 0.69 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.04 0.95 7.99 -2.39 -0.02 0.93 16 38 H 0.09 1.38 3.93 -2.39 -0.01 1.37 16 39 H 0.10 1.24 6.54 -2.39 -0.02 1.23 16 40 H 0.42 15.56 8.20 -92.71 -0.76 14.80 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 44 H 0.27 13.47 8.29 -92.71 -0.77 12.70 16 45 H 0.12 4.19 6.33 -2.39 -0.02 4.17 16 46 H 0.10 2.50 6.49 -2.39 -0.02 2.49 16 47 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.14 2.10 3.38 -2.38 -0.01 2.10 16 Total: -1.00 -67.97 381.26 4.53 -63.44 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: 0.24 Total: 43.44 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.59 Total: 5.27 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.24 Total: -112.68 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.08 Total: -40.19 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -67.97 4.53 -63.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890134831.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.397 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds