Wall clock time and date at job start Wed Apr 1 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50706 * 119.99706 * 2 1 4 4 C 1.30997 * 120.00277 * 179.97438 * 2 1 3 5 5 C 1.50697 * 119.99881 * 5.12437 * 4 2 1 6 6 C 1.52999 * 109.47236 * 125.79012 * 5 4 2 7 7 C 1.52999 * 109.47290 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47092 * 54.99565 * 7 6 5 9 9 C 1.53004 * 109.47221 * 175.00071 * 7 6 5 10 10 N 1.46504 * 109.46915 * 294.99943 * 7 6 5 11 11 C 1.34769 * 119.99929 * 155.00331 * 10 7 6 12 12 O 1.21359 * 120.00082 * 359.97438 * 11 10 7 13 13 C 1.49374 * 119.99780 * 180.02562 * 11 10 7 14 14 O 1.21353 * 120.00498 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99636 * 179.97438 * 13 11 10 16 16 C 1.39114 * 120.00022 * 185.59554 * 15 13 11 17 17 C 1.39711 * 119.57753 * 18.81208 * 16 15 13 18 18 C 1.38643 * 119.49580 * 180.02562 * 17 16 15 19 19 C 1.38350 * 118.67049 * 359.74479 * 18 17 16 20 20 C 1.40589 * 119.13374 * 0.48311 * 19 18 17 21 21 C 1.41348 * 119.78516 * 179.78625 * 20 19 18 22 22 H 1.07997 * 119.99611 * 7.05949 * 21 20 19 23 23 C 1.40032 * 119.99992 * 187.05196 * 21 20 19 24 24 N 1.30737 * 119.99594 * 195.70342 * 23 21 20 25 25 Si 1.86796 * 119.99871 * 15.70519 * 23 21 20 26 26 H 1.48505 * 109.47219 * 269.99794 * 25 23 21 27 27 H 1.48495 * 109.47376 * 29.99743 * 25 23 21 28 28 H 1.48498 * 109.47101 * 149.99719 * 25 23 21 29 29 N 1.31929 * 119.58047 * 198.79692 * 16 15 13 30 30 H 1.09000 * 109.46838 * 242.45237 * 1 2 3 31 31 H 1.08991 * 109.47120 * 2.44936 * 1 2 3 32 32 H 1.08998 * 109.47024 * 122.45302 * 1 2 3 33 33 H 1.09000 * 109.47326 * 269.99925 * 3 2 1 34 34 H 1.09004 * 109.47043 * 30.00218 * 3 2 1 35 35 H 1.09000 * 109.46774 * 149.99889 * 3 2 1 36 36 H 1.08005 * 119.99697 * 185.11746 * 4 2 1 37 37 H 1.09002 * 109.47317 * 5.78922 * 5 4 2 38 38 H 1.09000 * 109.46751 * 245.78734 * 5 4 2 39 39 H 1.08996 * 109.47387 * 59.99454 * 6 5 4 40 40 H 1.09004 * 109.47034 * 300.00070 * 6 5 4 41 41 H 1.08999 * 109.47127 * 60.00031 * 9 7 6 42 42 H 1.09000 * 109.47166 * 179.97438 * 9 7 6 43 43 H 1.09005 * 109.46777 * 299.99723 * 9 7 6 44 44 H 0.97000 * 119.99559 * 334.99474 * 10 7 6 45 45 H 0.97003 * 120.00375 * 5.60384 * 15 13 11 46 46 H 1.08006 * 120.25130 * 359.97438 * 17 16 15 47 47 H 1.08009 * 120.66611 * 180.02562 * 18 17 16 48 48 H 1.07998 * 120.43248 * 180.26095 * 19 18 17 49 49 H 0.96996 * 120.00388 * 354.94140 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4132 -2.4370 -0.1155 6 6 1.9793 -3.2487 -1.2823 7 6 1.2185 -4.5708 -1.4005 8 1 0.1511 -4.3691 -1.4888 9 6 1.6992 -5.3268 -2.6409 10 7 1.4647 -5.3842 -0.2071 11 6 0.5665 -6.3151 0.1709 12 8 -0.4464 -6.4794 -0.4770 13 6 0.8172 -7.1440 1.3880 14 8 1.8298 -6.9795 2.0363 15 7 -0.0813 -8.0746 1.7663 16 6 0.0936 -8.7651 2.9612 17 6 0.9438 -8.2450 3.9402 18 6 1.1173 -8.9348 5.1303 19 6 0.4334 -10.1233 5.3143 20 6 -0.4041 -10.5969 4.2892 21 6 -1.1058 -11.8118 4.4608 22 1 -1.0889 -12.3148 5.4164 23 6 -1.8229 -12.3632 3.3919 24 7 -2.7093 -13.2985 3.6128 25 14 -1.5131 -11.7623 1.6506 26 1 -2.4214 -10.6266 1.3498 27 1 -0.1027 -11.3149 1.5249 28 1 -1.7689 -12.8678 0.6926 29 7 -0.5458 -9.9026 3.1557 30 1 -0.3633 -0.4753 0.9112 31 1 -0.3633 1.0266 -0.0439 32 1 -0.3633 -0.5514 -0.8672 33 1 2.4422 1.6199 -1.0277 34 1 1.6714 2.0648 0.5139 35 1 3.2129 1.1748 0.5139 36 1 3.2389 -1.1362 0.0839 37 1 0.3569 -2.2343 -0.2926 38 1 1.5244 -3.0035 0.8090 39 1 3.0355 -3.4513 -1.1053 40 1 1.8681 -2.6820 -2.2068 41 1 2.7667 -5.5285 -2.5524 42 1 1.1575 -6.2689 -2.7248 43 1 1.5160 -4.7216 -3.5288 44 1 2.2742 -5.2527 0.3109 45 1 -0.8499 -8.2631 1.2053 46 1 1.4627 -7.3129 3.7709 47 1 1.7697 -8.5498 5.9001 48 1 0.5442 -10.6817 6.2320 49 1 -2.8184 -13.6623 4.5053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890306935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:38 Heat of formation + Delta-G solvation = -44.543817 kcal Electronic energy + Delta-G solvation = -29385.906166 eV Core-core repulsion = 25312.439300 eV Total energy + Delta-G solvation = -4073.466866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.91120 -39.41196 -38.09112 -37.65579 -36.24324 -34.74842 -33.55146 -32.53665 -31.15034 -30.62676 -29.68710 -28.18771 -26.87426 -25.86712 -25.01199 -23.12507 -22.00910 -21.76453 -20.93573 -20.01749 -18.83909 -18.23399 -18.16089 -17.05071 -16.48700 -16.10044 -15.80532 -15.29055 -15.14234 -14.89112 -14.65876 -14.53097 -14.16856 -14.06463 -13.98718 -13.63162 -13.34325 -13.16093 -12.96506 -12.78856 -12.59805 -12.49128 -12.27845 -12.25626 -12.07148 -11.98750 -11.83725 -11.74309 -11.41384 -11.16857 -10.97215 -10.89769 -10.73951 -10.39836 -10.05241 -9.76615 -9.47966 -9.24835 -9.11411 -8.97144 -8.59173 -7.92393 -7.51490 -7.31061 -4.80700 1.29638 1.83365 2.29128 2.50824 2.61944 3.31217 3.50287 3.61194 3.65111 3.91650 4.21705 4.33344 4.46554 4.55691 4.56585 4.63297 4.66437 4.73192 5.03736 5.07324 5.15894 5.19354 5.24398 5.35493 5.38382 5.42314 5.48306 5.48373 5.55877 5.63705 5.67199 5.74431 5.77791 5.86930 5.94232 5.97469 6.14228 6.34931 6.35569 6.39817 6.47160 6.59830 6.89350 7.03559 7.13737 7.38846 7.44141 7.51306 7.68112 7.75338 8.03272 8.11861 8.30676 8.59636 9.36538 9.94517 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002255 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.381268 B =12414.586109 C =13290.423575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C -0.117 4.117 4 C -0.164 4.164 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.139 3.861 8 H 0.093 0.907 9 C -0.166 4.166 10 N -0.696 5.696 11 C 0.514 3.486 12 O -0.514 6.514 13 C 0.507 3.493 14 O -0.496 6.496 15 N -0.623 5.623 16 C 0.378 3.622 17 C -0.310 4.310 18 C -0.036 4.036 19 C -0.272 4.272 20 C 0.273 3.727 21 C -0.477 4.477 22 H 0.085 0.915 23 C 0.049 3.951 24 N -0.800 5.800 25 Si 1.140 2.860 26 H -0.285 1.285 27 H -0.279 1.279 28 H -0.325 1.325 29 N -0.590 5.590 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.412 0.588 45 H 0.419 0.581 46 H 0.138 0.862 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 23.230 -10.531 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.137 4.137 3 C -0.173 4.173 4 C -0.182 4.182 5 C -0.136 4.136 6 C -0.158 4.158 7 C 0.035 3.965 8 H 0.111 0.889 9 C -0.224 4.224 10 N -0.351 5.351 11 C 0.294 3.706 12 O -0.389 6.389 13 C 0.288 3.712 14 O -0.370 6.370 15 N -0.269 5.269 16 C 0.147 3.853 17 C -0.334 4.334 18 C -0.060 4.060 19 C -0.295 4.295 20 C 0.149 3.851 21 C -0.509 4.509 22 H 0.103 0.897 23 C -0.174 4.174 24 N -0.421 5.421 25 Si 0.973 3.027 26 H -0.213 1.213 27 H -0.206 1.206 28 H -0.258 1.258 29 N -0.315 5.315 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.249 0.751 45 H 0.256 0.744 46 H 0.155 0.845 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.633 22.703 -12.614 27.070 hybrid contribution 1.027 0.283 2.499 2.717 sum 8.660 22.986 -10.115 26.565 Atomic orbital electron populations 1.20861 0.92398 1.02167 1.02186 1.21639 0.95858 0.95070 1.01087 1.20844 0.99626 0.94984 1.01875 1.22621 0.99432 0.93656 1.02466 1.20785 0.99837 0.94159 0.98787 1.21841 1.00150 0.94159 0.99628 1.21148 1.01566 0.89686 0.84067 0.88872 1.22199 1.01852 1.01400 0.96959 1.45838 1.23905 1.36472 1.28866 1.20042 0.83893 0.81353 0.85292 1.90782 1.26607 1.67113 1.54439 1.19973 0.83746 0.81668 0.85853 1.90687 1.25857 1.67090 1.53342 1.42925 1.26425 1.35723 1.21786 1.18017 0.93951 0.89261 0.84047 1.21463 1.10654 1.05624 0.95692 1.20904 0.95856 0.93886 0.95396 1.21643 1.05874 1.00232 1.01711 1.18192 0.89232 0.92085 0.85611 1.20698 1.26037 1.04090 1.00041 0.89689 1.27679 0.89059 0.92587 1.08031 1.70615 1.23067 1.21213 1.27196 0.82170 0.77994 0.72722 0.69808 1.21256 1.20612 1.25795 1.66184 1.31920 1.07884 1.25528 0.91450 0.92272 0.91457 0.91561 0.92054 0.92024 0.87381 0.90828 0.90792 0.90958 0.89992 0.92143 0.91684 0.91296 0.75107 0.74370 0.84493 0.87465 0.87541 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 8.62 36.01 0.31 -0.48 16 2 C -0.14 -0.96 6.05 -101.06 -0.61 -1.58 16 3 C -0.12 -0.67 9.96 36.01 0.36 -0.31 16 4 C -0.16 -1.17 9.11 -36.03 -0.33 -1.50 16 5 C -0.10 -0.71 5.34 -27.89 -0.15 -0.86 16 6 C -0.12 -0.74 4.74 -26.73 -0.13 -0.87 16 7 C 0.14 1.16 2.57 -67.93 -0.17 0.99 16 8 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 9 C -0.17 -1.32 9.48 37.16 0.35 -0.96 16 10 N -0.70 -7.23 4.52 -54.26 -0.25 -7.47 16 11 C 0.51 7.27 7.85 -11.62 -0.09 7.18 16 12 O -0.51 -8.25 16.15 5.49 0.09 -8.16 16 13 C 0.51 8.63 7.73 -11.62 -0.09 8.54 16 14 O -0.50 -8.93 13.27 5.49 0.07 -8.86 16 15 N -0.62 -12.20 5.39 -11.83 -0.06 -12.27 16 16 C 0.38 8.73 7.51 -155.09 -1.16 7.56 16 17 C -0.31 -6.81 8.83 -38.88 -0.34 -7.16 16 18 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 19 C -0.27 -6.40 9.83 -38.65 -0.38 -6.78 16 20 C 0.27 7.13 6.30 -84.99 -0.54 6.60 16 21 C -0.48 -12.89 9.51 -37.73 -0.36 -13.25 16 22 H 0.09 2.28 8.06 -52.49 -0.42 1.85 16 23 C 0.05 1.32 5.51 -17.35 -0.10 1.23 16 24 N -0.80 -21.62 13.65 55.55 0.76 -20.86 16 25 Si 1.14 28.00 25.95 -169.99 -4.41 23.59 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.97 6.47 56.52 0.37 -6.60 16 28 H -0.33 -7.85 7.11 56.52 0.40 -7.45 16 29 N -0.59 -15.06 4.95 -10.28 -0.05 -15.11 16 30 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.34 7.96 -51.93 -0.41 -0.07 16 32 H 0.07 0.42 7.28 -51.93 -0.38 0.05 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 35 H 0.06 0.34 8.04 -51.93 -0.42 -0.08 16 36 H 0.11 0.71 8.02 -52.48 -0.42 0.29 16 37 H 0.07 0.55 5.80 -51.93 -0.30 0.25 16 38 H 0.07 0.61 7.75 -51.93 -0.40 0.20 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.41 3.82 8.07 -40.82 -0.33 3.49 16 45 H 0.42 7.86 8.31 -40.82 -0.34 7.52 16 46 H 0.14 2.86 5.33 -52.50 -0.28 2.58 16 47 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 48 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 49 H 0.28 7.34 8.73 -40.82 -0.36 6.99 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -30.20 405.74 -9.07 -39.27 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.51 Total: 6.60 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.83 Total: -2.84 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.40 Total: -55.71 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.16 Total: -17.02 kcal Atomic # 14 Polarization: 28.00 SS G_CDS: -4.41 Total: 23.59 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.20 -9.07 -39.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890306935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds