Wall clock time and date at job start Wed Apr 1 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50706 * 119.99706 * 2 1 4 4 C 1.30997 * 120.00277 * 179.97438 * 2 1 3 5 5 C 1.50697 * 119.99881 * 5.12437 * 4 2 1 6 6 C 1.52999 * 109.47236 * 125.79012 * 5 4 2 7 7 C 1.52999 * 109.47290 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47092 * 54.99565 * 7 6 5 9 9 C 1.53004 * 109.47221 * 175.00071 * 7 6 5 10 10 N 1.46504 * 109.46915 * 294.99943 * 7 6 5 11 11 C 1.34769 * 119.99929 * 155.00331 * 10 7 6 12 12 O 1.21359 * 120.00082 * 359.97438 * 11 10 7 13 13 C 1.49374 * 119.99780 * 180.02562 * 11 10 7 14 14 O 1.21353 * 120.00498 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99636 * 179.97438 * 13 11 10 16 16 C 1.39114 * 120.00022 * 185.59554 * 15 13 11 17 17 C 1.39711 * 119.57753 * 18.81208 * 16 15 13 18 18 C 1.38643 * 119.49580 * 180.02562 * 17 16 15 19 19 C 1.38350 * 118.67049 * 359.74479 * 18 17 16 20 20 C 1.40589 * 119.13374 * 0.48311 * 19 18 17 21 21 C 1.41348 * 119.78516 * 179.78625 * 20 19 18 22 22 H 1.07997 * 119.99611 * 7.05949 * 21 20 19 23 23 C 1.40032 * 119.99992 * 187.05196 * 21 20 19 24 24 N 1.30737 * 119.99594 * 195.70342 * 23 21 20 25 25 Si 1.86796 * 119.99871 * 15.70519 * 23 21 20 26 26 H 1.48505 * 109.47219 * 269.99794 * 25 23 21 27 27 H 1.48495 * 109.47376 * 29.99743 * 25 23 21 28 28 H 1.48498 * 109.47101 * 149.99719 * 25 23 21 29 29 N 1.31929 * 119.58047 * 198.79692 * 16 15 13 30 30 H 1.09000 * 109.46838 * 242.45237 * 1 2 3 31 31 H 1.08991 * 109.47120 * 2.44936 * 1 2 3 32 32 H 1.08998 * 109.47024 * 122.45302 * 1 2 3 33 33 H 1.09000 * 109.47326 * 269.99925 * 3 2 1 34 34 H 1.09004 * 109.47043 * 30.00218 * 3 2 1 35 35 H 1.09000 * 109.46774 * 149.99889 * 3 2 1 36 36 H 1.08005 * 119.99697 * 185.11746 * 4 2 1 37 37 H 1.09002 * 109.47317 * 5.78922 * 5 4 2 38 38 H 1.09000 * 109.46751 * 245.78734 * 5 4 2 39 39 H 1.08996 * 109.47387 * 59.99454 * 6 5 4 40 40 H 1.09004 * 109.47034 * 300.00070 * 6 5 4 41 41 H 1.08999 * 109.47127 * 60.00031 * 9 7 6 42 42 H 1.09000 * 109.47166 * 179.97438 * 9 7 6 43 43 H 1.09005 * 109.46777 * 299.99723 * 9 7 6 44 44 H 0.97000 * 119.99559 * 334.99474 * 10 7 6 45 45 H 0.97003 * 120.00375 * 5.60384 * 15 13 11 46 46 H 1.08006 * 120.25130 * 359.97438 * 17 16 15 47 47 H 1.08009 * 120.66611 * 180.02562 * 18 17 16 48 48 H 1.07998 * 120.43248 * 180.26095 * 19 18 17 49 49 H 0.96996 * 120.00388 * 354.94140 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4132 -2.4370 -0.1155 6 6 1.9793 -3.2487 -1.2823 7 6 1.2185 -4.5708 -1.4005 8 1 0.1511 -4.3691 -1.4888 9 6 1.6992 -5.3268 -2.6409 10 7 1.4647 -5.3842 -0.2071 11 6 0.5665 -6.3151 0.1709 12 8 -0.4464 -6.4794 -0.4770 13 6 0.8172 -7.1440 1.3880 14 8 1.8298 -6.9795 2.0363 15 7 -0.0813 -8.0746 1.7663 16 6 0.0936 -8.7651 2.9612 17 6 0.9438 -8.2450 3.9402 18 6 1.1173 -8.9348 5.1303 19 6 0.4334 -10.1233 5.3143 20 6 -0.4041 -10.5969 4.2892 21 6 -1.1058 -11.8118 4.4608 22 1 -1.0889 -12.3148 5.4164 23 6 -1.8229 -12.3632 3.3919 24 7 -2.7093 -13.2985 3.6128 25 14 -1.5131 -11.7623 1.6506 26 1 -2.4214 -10.6266 1.3498 27 1 -0.1027 -11.3149 1.5249 28 1 -1.7689 -12.8678 0.6926 29 7 -0.5458 -9.9026 3.1557 30 1 -0.3633 -0.4753 0.9112 31 1 -0.3633 1.0266 -0.0439 32 1 -0.3633 -0.5514 -0.8672 33 1 2.4422 1.6199 -1.0277 34 1 1.6714 2.0648 0.5139 35 1 3.2129 1.1748 0.5139 36 1 3.2389 -1.1362 0.0839 37 1 0.3569 -2.2343 -0.2926 38 1 1.5244 -3.0035 0.8090 39 1 3.0355 -3.4513 -1.1053 40 1 1.8681 -2.6820 -2.2068 41 1 2.7667 -5.5285 -2.5524 42 1 1.1575 -6.2689 -2.7248 43 1 1.5160 -4.7216 -3.5288 44 1 2.2742 -5.2527 0.3109 45 1 -0.8499 -8.2631 1.2053 46 1 1.4627 -7.3129 3.7709 47 1 1.7697 -8.5498 5.9001 48 1 0.5442 -10.6817 6.2320 49 1 -2.8184 -13.6623 4.5053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890306935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:37 Heat of formation + Delta-G solvation = -61.452909 kcal Electronic energy + Delta-G solvation = -29386.639399 eV Core-core repulsion = 25312.439300 eV Total energy + Delta-G solvation = -4074.200100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.26487 -40.80833 -39.60443 -38.41295 -37.06664 -36.33778 -35.41223 -33.34446 -32.99016 -31.57097 -31.22030 -28.66321 -27.61871 -27.38339 -26.49690 -23.99257 -23.64844 -23.11586 -21.79832 -21.46518 -20.48285 -19.80506 -18.77462 -18.38424 -17.87036 -17.35797 -16.95167 -16.88616 -16.30110 -16.01433 -15.86721 -15.52586 -15.29415 -15.13901 -15.12913 -14.86723 -14.53823 -14.39951 -14.26715 -13.92106 -13.77326 -13.68162 -13.33179 -13.24723 -13.10550 -12.85871 -12.74734 -12.58843 -12.38896 -12.31481 -12.23714 -11.99648 -11.91621 -11.72010 -11.61607 -11.44329 -11.09548 -10.68780 -10.43374 -10.38110 -9.85521 -9.50373 -9.34744 -9.30406 -6.81980 -0.06891 0.69411 0.83333 1.07487 1.31358 1.52315 1.63493 1.94304 2.00340 2.37043 2.41282 2.60344 3.22102 3.54217 3.64443 4.00366 4.03230 4.07856 4.12252 4.19255 4.32045 4.44982 4.52521 4.59138 4.60525 4.67450 4.68492 4.70248 4.74449 4.77544 4.85725 4.90191 4.98565 5.01375 5.10254 5.13819 5.18197 5.23933 5.29515 5.32985 5.33983 5.38525 5.40296 5.64272 5.67976 5.84497 5.87760 5.98555 6.08733 6.21220 6.35703 6.53570 6.66465 6.80008 7.47492 7.92047 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002255 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.381268 B =12414.586109 C =13290.423575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C -0.117 4.117 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.109 4.109 7 C 0.137 3.863 8 H 0.083 0.917 9 C -0.163 4.163 10 N -0.675 5.675 11 C 0.522 3.478 12 O -0.536 6.536 13 C 0.511 3.489 14 O -0.503 6.503 15 N -0.630 5.630 16 C 0.365 3.635 17 C -0.301 4.301 18 C -0.027 4.027 19 C -0.285 4.285 20 C 0.257 3.743 21 C -0.509 4.509 22 H 0.073 0.927 23 C 0.024 3.976 24 N -0.823 5.823 25 Si 1.170 2.830 26 H -0.281 1.281 27 H -0.288 1.288 28 H -0.321 1.321 29 N -0.608 5.608 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.420 0.580 45 H 0.421 0.579 46 H 0.154 0.846 47 H 0.150 0.850 48 H 0.119 0.881 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 26.123 -11.574 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C -0.174 4.174 4 C -0.188 4.188 5 C -0.135 4.135 6 C -0.146 4.146 7 C 0.035 3.965 8 H 0.101 0.899 9 C -0.221 4.221 10 N -0.329 5.329 11 C 0.301 3.699 12 O -0.413 6.413 13 C 0.293 3.707 14 O -0.377 6.377 15 N -0.276 5.276 16 C 0.134 3.866 17 C -0.325 4.325 18 C -0.051 4.051 19 C -0.307 4.307 20 C 0.132 3.868 21 C -0.541 4.541 22 H 0.092 0.908 23 C -0.195 4.195 24 N -0.445 5.445 25 Si 1.001 2.999 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.253 1.253 29 N -0.334 5.334 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.258 0.742 45 H 0.259 0.741 46 H 0.171 0.829 47 H 0.167 0.833 48 H 0.137 0.863 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.643 25.645 -13.674 30.621 hybrid contribution 0.582 -0.359 2.838 2.919 sum 10.225 25.286 -10.837 29.349 Atomic orbital electron populations 1.20876 0.92393 1.02595 1.01902 1.21862 0.96132 0.95717 1.00806 1.20869 0.99626 0.94441 1.02438 1.22680 0.99783 0.93501 1.02804 1.20760 0.99733 0.94368 0.98656 1.21786 1.00305 0.92593 0.99963 1.21356 1.01545 0.90405 0.83232 0.89885 1.22181 1.02023 1.00504 0.97406 1.45874 1.23036 1.34899 1.29083 1.19509 0.84360 0.81799 0.84255 1.90788 1.27675 1.68003 1.54792 1.20512 0.82877 0.80908 0.86433 1.90654 1.26003 1.67106 1.53937 1.43004 1.27272 1.36238 1.21089 1.18380 0.93793 0.88900 0.85532 1.21855 1.09430 1.05857 0.95390 1.21354 0.95149 0.92614 0.96001 1.21837 1.05883 1.01356 1.01669 1.18403 0.89676 0.92021 0.86725 1.20684 1.28181 1.05378 0.99870 0.90845 1.28292 0.88915 0.92602 1.09672 1.70627 1.24182 1.22486 1.27249 0.81758 0.77318 0.72614 0.68196 1.20761 1.21577 1.25316 1.66123 1.32708 1.08902 1.25619 0.92173 0.91579 0.91267 0.90837 0.91733 0.91768 0.86717 0.91364 0.91905 0.89670 0.88390 0.91165 0.94045 0.89210 0.74167 0.74098 0.82865 0.83262 0.86332 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.62 71.24 0.61 -0.82 16 2 C -0.15 -1.79 6.05 -16.48 -0.10 -1.89 16 3 C -0.12 -1.12 9.96 71.24 0.71 -0.41 16 4 C -0.17 -2.06 9.11 25.65 0.23 -1.82 16 5 C -0.10 -1.21 5.34 29.85 0.16 -1.05 16 6 C -0.11 -1.02 4.74 30.59 0.14 -0.88 16 7 C 0.14 1.97 2.57 44.99 0.12 2.09 16 8 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 9 C -0.16 -2.18 9.48 71.98 0.68 -1.50 16 10 N -0.68 -12.56 4.52 -443.95 -2.01 -14.57 16 11 C 0.52 13.96 7.85 87.25 0.69 14.64 16 12 O -0.54 -16.66 16.15 -3.27 -0.05 -16.71 16 13 C 0.51 16.55 7.73 87.25 0.67 17.23 16 14 O -0.50 -16.93 13.27 -3.25 -0.04 -16.97 16 15 N -0.63 -24.05 5.39 -309.70 -1.67 -25.72 16 16 C 0.36 16.42 7.51 133.31 1.00 17.42 16 17 C -0.30 -12.51 8.83 22.72 0.20 -12.31 16 18 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 19 C -0.29 -13.10 9.83 22.87 0.22 -12.88 16 20 C 0.26 13.49 6.30 40.20 0.25 13.74 16 21 C -0.51 -28.26 9.51 23.47 0.22 -28.04 16 22 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 23 C 0.02 1.31 5.51 85.29 0.47 1.78 16 24 N -0.82 -45.71 13.65 21.84 0.30 -45.41 16 25 Si 1.17 57.67 25.95 68.60 1.78 59.45 16 26 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.29 -14.43 6.47 99.48 0.64 -13.79 16 28 H -0.32 -15.33 7.11 99.48 0.71 -14.63 16 29 N -0.61 -30.92 4.95 -186.42 -0.92 -31.85 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.07 0.67 7.96 -2.39 -0.02 0.65 16 32 H 0.07 0.78 7.28 -2.39 -0.02 0.76 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.57 8.07 -2.38 -0.02 0.55 16 35 H 0.06 0.57 8.04 -2.39 -0.02 0.56 16 36 H 0.11 1.22 8.02 -2.91 -0.02 1.20 16 37 H 0.07 0.91 5.80 -2.39 -0.01 0.90 16 38 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.42 6.66 8.07 -92.71 -0.75 5.91 16 45 H 0.42 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.15 5.90 5.33 -3.26 -0.02 5.88 16 47 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 48 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 49 H 0.28 15.19 8.73 -92.71 -0.81 14.38 16 Total: -1.00 -64.99 405.74 3.26 -61.73 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.64 Total: 25.60 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.52 Total: 4.45 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -4.30 Total: -117.54 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.10 Total: -33.69 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.78 Total: 59.45 kcal Total: -64.99 3.26 -61.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890306935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds