Wall clock time and date at job start Wed Apr 1 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50692 * 119.99861 * 2 1 4 4 C 1.31003 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.50697 * 119.99963 * 359.97438 * 4 2 1 6 6 C 1.53003 * 109.46948 * 125.00316 * 5 4 2 7 7 C 1.53006 * 109.47104 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46639 * 304.99648 * 7 6 5 9 9 C 1.53002 * 109.46990 * 185.00222 * 7 6 5 10 10 N 1.46496 * 109.47213 * 64.99481 * 7 6 5 11 11 C 1.34769 * 120.00010 * 204.99861 * 10 7 6 12 12 O 1.21362 * 120.00184 * 0.02562 * 11 10 7 13 13 C 1.49372 * 120.00490 * 180.02562 * 11 10 7 14 14 O 1.21362 * 119.99327 * 0.02562 * 13 11 10 15 15 N 1.34769 * 120.00490 * 179.97438 * 13 11 10 16 16 C 1.39108 * 120.00144 * 174.85491 * 15 13 11 17 17 C 1.39705 * 119.58110 * 185.38766 * 16 15 13 18 18 C 1.38660 * 119.49576 * 179.72580 * 17 16 15 19 19 C 1.38349 * 118.66681 * 0.53883 * 18 17 16 20 20 C 1.40592 * 119.13808 * 359.72518 * 19 18 17 21 21 C 1.41336 * 119.78518 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00432 * 359.97438 * 21 20 19 23 23 C 1.40033 * 119.99913 * 179.97438 * 21 20 19 24 24 N 1.30737 * 120.00222 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00083 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47219 * 119.99794 * 25 23 21 28 28 H 1.48498 * 109.46884 * 240.00072 * 25 23 21 29 29 N 1.31936 * 119.57939 * 5.65848 * 16 15 13 30 30 H 1.09001 * 109.46972 * 240.00018 * 1 2 3 31 31 H 1.08992 * 109.46907 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46850 * 120.00405 * 1 2 3 33 33 H 1.08996 * 109.47164 * 269.99686 * 3 2 1 34 34 H 1.09001 * 109.47506 * 30.00444 * 3 2 1 35 35 H 1.09001 * 109.46754 * 149.99965 * 3 2 1 36 36 H 1.08002 * 120.00028 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47231 * 244.99740 * 5 4 2 38 38 H 1.09001 * 109.47480 * 5.00225 * 5 4 2 39 39 H 1.09002 * 109.47141 * 299.99483 * 6 5 4 40 40 H 1.09002 * 109.47560 * 59.99956 * 6 5 4 41 41 H 1.08993 * 109.47489 * 59.99787 * 9 7 6 42 42 H 1.09004 * 109.46956 * 180.02562 * 9 7 6 43 43 H 1.09002 * 109.46512 * 299.99519 * 9 7 6 44 44 H 0.96994 * 120.00284 * 25.00621 * 10 7 6 45 45 H 0.96999 * 120.00123 * 354.85897 * 15 13 11 46 46 H 1.08000 * 120.25477 * 0.02562 * 17 16 15 47 47 H 1.07994 * 120.66523 * 180.24239 * 18 17 16 48 48 H 1.08001 * 120.42689 * 179.75192 * 19 18 17 49 49 H 0.97004 * 120.00733 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0017 6 6 1.8697 -3.2958 -1.1795 7 6 1.1042 -4.6206 -1.1788 8 1 1.2269 -5.1105 -0.2128 9 6 1.6518 -5.5267 -2.2833 10 7 -0.3179 -4.3630 -1.4185 11 6 -1.2444 -5.2386 -0.9813 12 8 -0.9007 -6.2403 -0.3885 13 6 -2.6944 -4.9764 -1.2262 14 8 -3.0381 -3.9749 -1.8193 15 7 -3.6208 -5.8523 -0.7894 16 6 -4.9739 -5.5575 -0.9219 17 6 -5.9246 -6.4170 -0.3660 18 6 -7.2726 -6.1184 -0.4942 19 6 -7.6366 -4.9756 -1.1838 20 6 -6.6326 -4.1538 -1.7252 21 6 -6.9890 -2.9828 -2.4318 22 1 -8.0298 -2.7219 -2.5548 23 6 -5.9926 -2.1607 -2.9725 24 7 -4.7327 -2.4762 -2.8233 25 14 -6.4637 -0.6126 -3.9058 26 1 -7.9426 -0.4819 -3.9333 27 1 -5.8741 0.5712 -3.2305 28 1 -5.9488 -0.6969 -5.2961 29 7 -5.3431 -4.4726 -1.5757 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4422 1.6197 -1.0276 34 1 1.6715 2.0647 0.5139 35 1 3.2129 1.1747 0.5139 36 1 3.2421 -1.1346 0.0009 37 1 1.6033 -2.9708 0.9333 38 1 0.3402 -2.2425 -0.0876 39 1 1.6748 -2.7646 -2.1112 40 1 2.9380 -3.4930 -1.0903 41 1 2.7098 -5.7183 -2.1049 42 1 1.1061 -6.4703 -2.2831 43 1 1.5291 -5.0367 -3.2492 44 1 -0.5927 -3.5623 -1.8920 45 1 -3.3442 -6.6883 -0.3826 46 1 -5.6120 -7.3046 0.1639 47 1 -8.0234 -6.7675 -0.0684 48 1 -8.6785 -4.7180 -1.3042 49 1 -4.0424 -1.9069 -3.1982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890306936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:42 Heat of formation + Delta-G solvation = -15.788569 kcal Electronic energy + Delta-G solvation = -30303.368358 eV Core-core repulsion = 26231.148413 eV Total energy + Delta-G solvation = -4072.219945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.27638 -38.80870 -37.62817 -37.13297 -35.91713 -34.28434 -33.11737 -32.20902 -30.41109 -30.32222 -29.19319 -27.91925 -26.66668 -25.80795 -24.68169 -22.86942 -21.82876 -21.24369 -20.65956 -19.59915 -18.31478 -17.93902 -17.12697 -16.71364 -16.04269 -15.44017 -15.27849 -15.02665 -14.71142 -14.51713 -14.48438 -14.23687 -13.76191 -13.71819 -13.59286 -13.35102 -13.21110 -12.88702 -12.78562 -12.53186 -12.29042 -12.04334 -12.01713 -11.98807 -11.82567 -11.60864 -11.33610 -11.22421 -11.00737 -10.97673 -10.80562 -10.71033 -10.67736 -10.52873 -9.96090 -9.80414 -9.12749 -9.10051 -8.96545 -8.78851 -8.03513 -7.33137 -7.05711 -6.22538 -4.45461 1.94337 2.04504 2.79978 2.83479 3.08724 3.13455 3.16908 3.22421 3.98328 4.01050 4.10327 4.44789 4.74887 4.84382 4.85853 4.87487 4.97089 5.03759 5.20635 5.30334 5.37604 5.40628 5.46262 5.60077 5.61738 5.65436 5.71017 5.73630 5.80110 5.96764 5.98907 6.00041 6.06564 6.08687 6.13216 6.42096 6.47169 6.56893 6.58111 6.75470 6.79524 6.81133 7.15274 7.31378 7.50974 7.53345 7.76211 7.91569 8.05846 8.19568 8.37346 8.63251 8.93865 9.01898 10.14410 10.40740 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.003541 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.190151 B = 7905.328813 C =10166.664762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 C -0.117 4.117 4 C -0.169 4.169 5 C -0.098 4.098 6 C -0.120 4.120 7 C 0.140 3.860 8 H 0.090 0.910 9 C -0.164 4.164 10 N -0.699 5.699 11 C 0.509 3.491 12 O -0.535 6.535 13 C 0.465 3.535 14 O -0.387 6.387 15 N -0.639 5.639 16 C 0.368 3.632 17 C -0.349 4.349 18 C -0.036 4.036 19 C -0.301 4.301 20 C 0.271 3.729 21 C -0.424 4.424 22 H 0.084 0.916 23 C 0.060 3.940 24 N -0.662 5.662 25 Si 0.896 3.104 26 H -0.262 1.262 27 H -0.275 1.275 28 H -0.275 1.275 29 N -0.474 5.474 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.412 0.588 45 H 0.411 0.589 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 2.375 2.634 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.174 4.174 4 C -0.187 4.187 5 C -0.135 4.135 6 C -0.158 4.158 7 C 0.035 3.965 8 H 0.108 0.892 9 C -0.222 4.222 10 N -0.354 5.354 11 C 0.291 3.709 12 O -0.412 6.412 13 C 0.242 3.758 14 O -0.250 6.250 15 N -0.288 5.288 16 C 0.130 3.870 17 C -0.375 4.375 18 C -0.060 4.060 19 C -0.324 4.324 20 C 0.146 3.854 21 C -0.454 4.454 22 H 0.102 0.898 23 C -0.169 4.169 24 N -0.281 5.281 25 Si 0.721 3.279 26 H -0.186 1.186 27 H -0.200 1.200 28 H -0.200 1.200 29 N -0.193 5.193 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.249 0.751 45 H 0.246 0.754 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.416 3.105 2.184 16.849 hybrid contribution -0.696 -0.038 -0.010 0.697 sum 15.720 3.067 2.174 16.164 Atomic orbital electron populations 1.20877 0.91933 1.02390 1.02587 1.21693 0.96069 0.94961 1.00306 1.20846 0.99463 0.95148 1.01895 1.22576 0.99077 0.93728 1.03354 1.20778 1.00651 0.93792 0.98258 1.21836 1.00154 0.94446 0.99334 1.21068 0.79493 0.95887 1.00007 0.89216 1.22183 1.01043 1.00302 0.98703 1.45858 1.05743 1.25736 1.58025 1.20805 0.88008 0.83256 0.78835 1.90689 1.82610 1.27179 1.40708 1.20172 0.85811 0.86250 0.83605 1.91207 1.79475 1.23088 1.31230 1.42997 1.04077 1.21688 1.59994 1.18550 0.82026 0.92783 0.93615 1.20520 0.93252 1.04997 1.18703 1.20585 0.94234 0.95498 0.95710 1.21651 0.98896 1.00230 1.11608 1.18374 0.85750 0.91868 0.89423 1.19621 0.94213 1.03800 1.27805 0.89828 1.26155 0.95088 0.99074 0.96536 1.70315 0.99331 1.31580 1.26838 0.86453 0.80039 0.81826 0.79628 1.18557 1.20021 1.20042 1.68648 1.18070 1.14249 1.18354 0.91461 0.92234 0.91006 0.91599 0.91947 0.92179 0.87638 0.91164 0.90446 0.91073 0.90295 0.91618 0.91881 0.92254 0.75122 0.75352 0.88746 0.88387 0.88400 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.53 36.01 0.31 -1.01 16 2 C -0.13 -1.30 6.05 -101.07 -0.61 -1.91 16 3 C -0.12 -0.96 9.97 36.00 0.36 -0.60 16 4 C -0.17 -1.60 9.11 -36.03 -0.33 -1.93 16 5 C -0.10 -0.96 5.35 -27.88 -0.15 -1.11 16 6 C -0.12 -1.04 4.74 -26.73 -0.13 -1.17 16 7 C 0.14 1.51 2.57 -67.93 -0.17 1.33 16 8 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 9 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 10 N -0.70 -9.42 4.52 -54.26 -0.25 -9.67 16 11 C 0.51 8.59 7.85 -11.63 -0.09 8.49 16 12 O -0.53 -9.57 16.15 5.49 0.09 -9.48 16 13 C 0.47 9.50 7.84 -11.63 -0.09 9.41 16 14 O -0.39 -9.06 12.24 5.49 0.07 -8.99 16 15 N -0.64 -13.26 5.37 -11.83 -0.06 -13.32 16 16 C 0.37 8.98 7.42 -155.10 -1.15 7.83 16 17 C -0.35 -7.86 9.96 -38.88 -0.39 -8.25 16 18 C -0.04 -0.81 10.15 -39.38 -0.40 -1.21 16 19 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 20 C 0.27 7.45 6.55 -85.00 -0.56 6.89 16 21 C -0.42 -11.33 9.14 -37.73 -0.34 -11.68 16 22 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 23 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 24 N -0.66 -17.38 8.99 55.55 0.50 -16.88 16 25 Si 0.90 18.58 29.56 -169.99 -5.02 13.56 16 26 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 28 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 29 N -0.47 -13.00 5.74 -10.28 -0.06 -13.06 16 30 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 31 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 32 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.11 0.87 8.04 -52.49 -0.42 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.88 5.40 -51.93 -0.28 0.60 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.41 5.48 8.07 -40.82 -0.33 5.15 16 45 H 0.41 7.34 8.18 -40.82 -0.33 7.00 16 46 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 48 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 49 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -30.86 408.05 -10.04 -40.90 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.59 Total: 13.37 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.87 Total: -2.58 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.13 Total: -52.93 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.86 -10.04 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890306936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.116 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds