Wall clock time and date at job start Wed Apr 1 2020 04:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50692 * 119.99861 * 2 1 4 4 C 1.31003 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.50697 * 119.99963 * 359.97438 * 4 2 1 6 6 C 1.53003 * 109.46948 * 125.00316 * 5 4 2 7 7 C 1.53006 * 109.47104 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46639 * 304.99648 * 7 6 5 9 9 C 1.53002 * 109.46990 * 185.00222 * 7 6 5 10 10 N 1.46496 * 109.47213 * 64.99481 * 7 6 5 11 11 C 1.34769 * 120.00010 * 204.99861 * 10 7 6 12 12 O 1.21362 * 120.00184 * 0.02562 * 11 10 7 13 13 C 1.49372 * 120.00490 * 180.02562 * 11 10 7 14 14 O 1.21362 * 119.99327 * 0.02562 * 13 11 10 15 15 N 1.34769 * 120.00490 * 179.97438 * 13 11 10 16 16 C 1.39108 * 120.00144 * 174.85491 * 15 13 11 17 17 C 1.39705 * 119.58110 * 185.38766 * 16 15 13 18 18 C 1.38660 * 119.49576 * 179.72580 * 17 16 15 19 19 C 1.38349 * 118.66681 * 0.53883 * 18 17 16 20 20 C 1.40592 * 119.13808 * 359.72518 * 19 18 17 21 21 C 1.41336 * 119.78518 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00432 * 359.97438 * 21 20 19 23 23 C 1.40033 * 119.99913 * 179.97438 * 21 20 19 24 24 N 1.30737 * 120.00222 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00083 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47219 * 119.99794 * 25 23 21 28 28 H 1.48498 * 109.46884 * 240.00072 * 25 23 21 29 29 N 1.31936 * 119.57939 * 5.65848 * 16 15 13 30 30 H 1.09001 * 109.46972 * 240.00018 * 1 2 3 31 31 H 1.08992 * 109.46907 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46850 * 120.00405 * 1 2 3 33 33 H 1.08996 * 109.47164 * 269.99686 * 3 2 1 34 34 H 1.09001 * 109.47506 * 30.00444 * 3 2 1 35 35 H 1.09001 * 109.46754 * 149.99965 * 3 2 1 36 36 H 1.08002 * 120.00028 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47231 * 244.99740 * 5 4 2 38 38 H 1.09001 * 109.47480 * 5.00225 * 5 4 2 39 39 H 1.09002 * 109.47141 * 299.99483 * 6 5 4 40 40 H 1.09002 * 109.47560 * 59.99956 * 6 5 4 41 41 H 1.08993 * 109.47489 * 59.99787 * 9 7 6 42 42 H 1.09004 * 109.46956 * 180.02562 * 9 7 6 43 43 H 1.09002 * 109.46512 * 299.99519 * 9 7 6 44 44 H 0.96994 * 120.00284 * 25.00621 * 10 7 6 45 45 H 0.96999 * 120.00123 * 354.85897 * 15 13 11 46 46 H 1.08000 * 120.25477 * 0.02562 * 17 16 15 47 47 H 1.07994 * 120.66523 * 180.24239 * 18 17 16 48 48 H 1.08001 * 120.42689 * 179.75192 * 19 18 17 49 49 H 0.97004 * 120.00733 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0017 6 6 1.8697 -3.2958 -1.1795 7 6 1.1042 -4.6206 -1.1788 8 1 1.2269 -5.1105 -0.2128 9 6 1.6518 -5.5267 -2.2833 10 7 -0.3179 -4.3630 -1.4185 11 6 -1.2444 -5.2386 -0.9813 12 8 -0.9007 -6.2403 -0.3885 13 6 -2.6944 -4.9764 -1.2262 14 8 -3.0381 -3.9749 -1.8193 15 7 -3.6208 -5.8523 -0.7894 16 6 -4.9739 -5.5575 -0.9219 17 6 -5.9246 -6.4170 -0.3660 18 6 -7.2726 -6.1184 -0.4942 19 6 -7.6366 -4.9756 -1.1838 20 6 -6.6326 -4.1538 -1.7252 21 6 -6.9890 -2.9828 -2.4318 22 1 -8.0298 -2.7219 -2.5548 23 6 -5.9926 -2.1607 -2.9725 24 7 -4.7327 -2.4762 -2.8233 25 14 -6.4637 -0.6126 -3.9058 26 1 -7.9426 -0.4819 -3.9333 27 1 -5.8741 0.5712 -3.2305 28 1 -5.9488 -0.6969 -5.2961 29 7 -5.3431 -4.4726 -1.5757 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4422 1.6197 -1.0276 34 1 1.6715 2.0647 0.5139 35 1 3.2129 1.1747 0.5139 36 1 3.2421 -1.1346 0.0009 37 1 1.6033 -2.9708 0.9333 38 1 0.3402 -2.2425 -0.0876 39 1 1.6748 -2.7646 -2.1112 40 1 2.9380 -3.4930 -1.0903 41 1 2.7098 -5.7183 -2.1049 42 1 1.1061 -6.4703 -2.2831 43 1 1.5291 -5.0367 -3.2492 44 1 -0.5927 -3.5623 -1.8920 45 1 -3.3442 -6.6883 -0.3826 46 1 -5.6120 -7.3046 0.1639 47 1 -8.0234 -6.7675 -0.0684 48 1 -8.6785 -4.7180 -1.3042 49 1 -4.0424 -1.9069 -3.1982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890306936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:41 Heat of formation + Delta-G solvation = -32.743563 kcal Electronic energy + Delta-G solvation = -30304.103581 eV Core-core repulsion = 26231.148413 eV Total energy + Delta-G solvation = -4072.955169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.74158 -40.39329 -39.05084 -38.34280 -36.94408 -36.02238 -34.91485 -33.24191 -32.26656 -31.28047 -31.00964 -28.70380 -27.67012 -27.42020 -26.19224 -23.92728 -23.40720 -22.86348 -21.73357 -21.12277 -19.96213 -18.90741 -18.65038 -18.16866 -17.54934 -16.84053 -16.47610 -16.41613 -16.28550 -16.04065 -15.57698 -15.46981 -15.12686 -15.04210 -14.85031 -14.65046 -14.46033 -14.03457 -13.95333 -13.76686 -13.60088 -13.29987 -13.10011 -12.90367 -12.77837 -12.74578 -12.65522 -12.56257 -12.54818 -12.34456 -12.28081 -12.14934 -11.74201 -11.61219 -11.60503 -11.50334 -10.92129 -10.57538 -10.26306 -9.93381 -9.54951 -9.19275 -8.91587 -8.08656 -6.42470 0.40157 1.03122 1.27728 1.29139 1.42350 1.44180 1.53439 1.55822 2.27271 2.40484 2.70800 2.98327 3.51509 3.66867 3.97612 4.01664 4.03749 4.11052 4.21071 4.32929 4.39340 4.53929 4.60183 4.65614 4.67546 4.70824 4.79890 4.82000 4.85832 4.87988 4.92153 4.94226 4.98023 4.99221 5.08665 5.11440 5.19562 5.26741 5.27271 5.35243 5.41012 5.63681 5.71965 5.80736 5.89960 6.01859 6.06616 6.18001 6.30553 6.56041 6.73250 6.88329 7.04245 7.30907 8.25354 8.55494 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.003541 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.190151 B = 7905.328813 C =10166.664762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C -0.115 4.115 4 C -0.165 4.165 5 C -0.099 4.099 6 C -0.109 4.109 7 C 0.137 3.863 8 H 0.083 0.917 9 C -0.160 4.160 10 N -0.684 5.684 11 C 0.519 3.481 12 O -0.546 6.546 13 C 0.458 3.542 14 O -0.420 6.420 15 N -0.634 5.634 16 C 0.347 3.653 17 C -0.344 4.344 18 C -0.033 4.033 19 C -0.322 4.322 20 C 0.236 3.764 21 C -0.460 4.460 22 H 0.087 0.913 23 C 0.016 3.984 24 N -0.692 5.692 25 Si 0.973 3.027 26 H -0.257 1.257 27 H -0.269 1.269 28 H -0.270 1.270 29 N -0.504 5.504 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.413 0.587 45 H 0.424 0.576 46 H 0.129 0.871 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.209 2.350 2.728 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C -0.171 4.171 4 C -0.182 4.182 5 C -0.136 4.136 6 C -0.146 4.146 7 C 0.034 3.966 8 H 0.102 0.898 9 C -0.218 4.218 10 N -0.337 5.337 11 C 0.300 3.700 12 O -0.424 6.424 13 C 0.236 3.764 14 O -0.285 6.285 15 N -0.284 5.284 16 C 0.109 3.891 17 C -0.369 4.369 18 C -0.057 4.057 19 C -0.345 4.345 20 C 0.111 3.889 21 C -0.491 4.491 22 H 0.105 0.895 23 C -0.210 4.210 24 N -0.312 5.312 25 Si 0.795 3.205 26 H -0.180 1.180 27 H -0.194 1.194 28 H -0.195 1.195 29 N -0.224 5.224 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.250 0.750 45 H 0.262 0.738 46 H 0.147 0.853 47 H 0.157 0.843 48 H 0.126 0.874 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.149 3.054 2.294 18.547 hybrid contribution -1.197 -0.158 0.048 1.209 sum 16.952 2.896 2.342 17.356 Atomic orbital electron populations 1.20843 0.93287 1.02183 1.01458 1.21823 0.95358 0.96221 1.01085 1.20852 0.99737 0.94118 1.02435 1.22701 0.99933 0.93092 1.02516 1.20762 0.99538 0.94485 0.98820 1.21789 1.01186 0.92791 0.98875 1.21329 0.77666 0.97445 1.00129 0.89841 1.22154 1.02336 0.98852 0.98428 1.45930 1.06605 1.24692 1.56445 1.20081 0.86697 0.83798 0.79459 1.90685 1.82295 1.27729 1.41722 1.20845 0.87369 0.85594 0.82623 1.91202 1.80437 1.24289 1.32525 1.42998 1.03106 1.22369 1.59884 1.19009 0.83807 0.92702 0.93583 1.20963 0.93111 1.05371 1.17447 1.21040 0.95245 0.95003 0.94436 1.21846 0.98992 1.01141 1.12525 1.18868 0.86680 0.92971 0.90377 1.19933 0.94849 1.04880 1.29452 0.89533 1.26961 0.94823 1.02073 0.97138 1.70460 1.00220 1.32855 1.27639 0.85290 0.79781 0.77411 0.78057 1.18016 1.19443 1.19494 1.68607 1.18396 1.15799 1.19634 0.92560 0.91948 0.92302 0.91063 0.91885 0.90967 0.85705 0.91156 0.92610 0.90767 0.87550 0.88860 0.94017 0.91812 0.74983 0.73845 0.85346 0.84345 0.87400 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 8.53 71.24 0.61 -2.10 16 2 C -0.14 -2.75 6.05 -16.49 -0.10 -2.85 16 3 C -0.11 -1.70 9.97 71.23 0.71 -0.99 16 4 C -0.16 -2.82 9.11 25.64 0.23 -2.59 16 5 C -0.10 -1.83 5.35 29.85 0.16 -1.67 16 6 C -0.11 -1.66 4.74 30.60 0.14 -1.51 16 7 C 0.14 2.76 2.57 44.99 0.12 2.88 16 8 H 0.08 1.85 7.58 -2.39 -0.02 1.83 16 9 C -0.16 -2.88 9.48 71.98 0.68 -2.20 16 10 N -0.68 -18.35 4.52 -443.94 -2.01 -20.35 16 11 C 0.52 17.62 7.85 87.25 0.69 18.31 16 12 O -0.55 -19.35 16.15 -3.28 -0.05 -19.40 16 13 C 0.46 19.19 7.84 87.25 0.68 19.87 16 14 O -0.42 -20.47 12.24 -3.28 -0.04 -20.51 16 15 N -0.63 -26.58 5.37 -309.71 -1.66 -28.24 16 16 C 0.35 17.11 7.42 133.30 0.99 18.10 16 17 C -0.34 -15.05 9.96 22.73 0.23 -14.82 16 18 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 19 C -0.32 -16.06 9.83 22.87 0.22 -15.84 16 20 C 0.24 13.42 6.55 40.20 0.26 13.68 16 21 C -0.46 -25.51 9.14 23.47 0.21 -25.29 16 22 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 23 C 0.02 0.82 5.50 85.29 0.47 1.28 16 24 N -0.69 -37.76 8.99 21.84 0.20 -37.56 16 25 Si 0.97 39.08 29.56 68.60 2.03 41.11 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 28 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 29 N -0.50 -28.55 5.74 -186.43 -1.07 -29.62 16 30 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 31 H 0.06 1.30 7.94 -2.39 -0.02 1.29 16 32 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 35 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.13 1.68 8.04 -2.91 -0.02 1.66 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.28 5.40 -2.39 -0.01 1.27 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.41 11.17 8.07 -92.71 -0.75 10.42 16 45 H 0.42 14.99 8.18 -92.71 -0.76 14.23 16 46 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 47 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 48 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 49 H 0.27 13.74 8.29 -92.71 -0.77 12.97 16 Total: -1.00 -69.05 408.05 3.40 -65.65 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.53 Total: 45.87 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.54 Total: 3.06 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.54 Total: -115.78 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.09 Total: -39.91 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -69.05 3.40 -65.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890306936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.909 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds