Wall clock time and date at job start Wed Apr 1 2020 03:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47111 * 240.00246 * 2 1 3 5 5 C 1.38228 * 120.00256 * 118.28041 * 4 2 1 6 6 C 1.38240 * 120.00163 * 179.72285 * 5 4 2 7 7 C 1.38228 * 119.99884 * 0.28270 * 6 5 4 8 8 C 1.38237 * 120.00350 * 359.97335 * 7 6 5 9 9 C 1.38239 * 119.99773 * 298.49588 * 4 2 1 10 10 C 1.52997 * 109.47156 * 119.99993 * 2 1 3 11 11 H 1.09001 * 109.87244 * 52.29499 * 10 2 1 12 12 C 1.54320 * 109.88238 * 173.30724 * 10 2 1 13 13 C 1.55159 * 102.94304 * 141.61450 * 12 10 2 14 14 C 1.54910 * 101.57838 * 324.49549 * 13 12 10 15 15 N 1.47018 * 109.88610 * 291.11909 * 10 2 1 16 16 C 1.34777 * 125.65152 * 61.59235 * 15 10 2 17 17 O 1.21590 * 119.99589 * 359.00684 * 16 15 10 18 18 N 1.34768 * 120.00317 * 179.00738 * 16 15 10 19 19 C 1.46501 * 120.00173 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47340 * 179.97438 * 19 18 16 21 21 O 1.21290 * 120.00216 * 0.02562 * 20 19 18 22 22 N 1.34781 * 120.00221 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00168 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00094 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99887 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00112 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46968 * 89.99758 * 27 25 23 29 29 H 1.48493 * 109.47151 * 209.99807 * 27 25 23 30 30 H 1.48498 * 109.47248 * 330.00117 * 27 25 23 31 31 H 1.09005 * 109.46782 * 205.25656 * 1 2 3 32 32 H 1.09001 * 109.46804 * 325.25300 * 1 2 3 33 33 H 1.08999 * 109.47200 * 85.25732 * 1 2 3 34 34 H 1.07998 * 120.00463 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.99999 * 180.25290 * 6 5 4 36 36 H 1.08006 * 120.00464 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00282 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.00194 * 0.06033 * 9 4 2 39 39 H 1.09006 * 110.72199 * 259.97386 * 12 10 2 40 40 H 1.08998 * 110.72088 * 23.25132 * 12 10 2 41 41 H 1.08999 * 111.00844 * 82.57268 * 13 12 10 42 42 H 1.09001 * 111.00263 * 206.38789 * 13 12 10 43 43 H 1.09000 * 110.36401 * 155.84844 * 14 13 12 44 44 H 1.08993 * 110.37055 * 278.17451 * 14 13 12 45 45 H 0.97000 * 120.00085 * 359.97438 * 18 16 15 46 46 H 1.09002 * 109.46975 * 300.00148 * 19 18 16 47 47 H 1.09003 * 109.47220 * 59.99855 * 19 18 16 48 48 H 0.96997 * 119.99616 * 359.97438 * 22 20 19 49 49 H 0.96999 * 119.99889 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.7975 -0.0287 -2.1582 6 6 3.2631 -0.6818 -3.2841 7 6 2.9586 -2.0151 -3.4851 8 6 2.1890 -2.6955 -2.5600 9 6 1.7242 -2.0426 -1.4337 10 6 2.0400 -0.7212 1.2492 11 1 1.5725 -1.7028 1.3272 12 6 3.5739 -0.8749 1.1771 13 6 4.0166 -0.6351 2.6447 14 6 3.0050 0.4453 3.1020 15 7 1.7371 0.0769 2.4462 16 6 0.5045 0.4165 2.8726 17 8 -0.4744 0.0718 2.2391 18 7 0.3569 1.1381 4.0012 19 6 -0.9829 1.5067 4.4651 20 6 -0.8718 2.3046 5.7387 21 8 0.2193 2.5424 6.2121 22 7 -1.9848 2.7540 6.3517 23 6 -1.8837 3.4803 7.5100 24 1 -0.9121 3.6927 7.9311 25 6 -3.0311 3.9440 8.1417 26 7 -4.2134 3.6859 7.6291 27 14 -2.8933 4.9342 9.7196 28 1 -2.7906 6.3786 9.3902 29 1 -4.0977 4.7019 10.5566 30 1 -1.6820 4.5096 10.4664 31 1 -0.3633 -0.9295 0.4385 32 1 -0.3633 0.8444 0.5857 33 1 -0.3633 0.0850 -1.0241 34 1 3.0357 1.0129 -2.0011 35 1 3.8643 -0.1503 -4.0069 36 1 3.3220 -2.5254 -4.3649 37 1 1.9508 -3.7371 -2.7173 38 1 1.1227 -2.5740 -0.7111 39 1 3.8460 -1.8789 0.8514 40 1 4.0061 -0.1235 0.5163 41 1 3.9125 -1.5438 3.2377 42 1 5.0383 -0.2578 2.6879 43 1 2.8915 0.4241 4.1859 44 1 3.3295 1.4324 2.7729 45 1 1.1378 1.4127 4.5069 46 1 -1.4792 2.1066 3.7022 47 1 -1.5640 0.6036 4.6521 48 1 -2.8574 2.5641 5.9729 49 1 -5.0143 4.0100 8.0698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922468032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:24 Heat of formation + Delta-G solvation = -30.914601 kcal Electronic energy + Delta-G solvation = -30116.403367 eV Core-core repulsion = 26043.527508 eV Total energy + Delta-G solvation = -4072.875859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.76853 -39.41827 -38.40027 -37.39058 -34.91409 -34.19853 -33.44050 -31.64432 -31.31331 -31.10160 -29.65113 -28.16559 -27.38357 -24.61280 -24.05187 -23.06015 -22.59100 -21.46909 -20.62847 -19.60221 -19.13818 -18.29793 -17.80695 -17.29173 -16.39311 -15.93919 -15.44652 -15.35807 -15.08364 -14.94324 -14.76546 -14.26349 -14.16179 -13.87756 -13.68112 -13.63477 -13.51409 -13.19200 -13.00749 -12.88521 -12.71581 -12.39674 -12.17870 -12.08674 -11.74100 -11.62321 -11.42457 -11.38297 -11.12315 -11.10863 -10.85927 -10.78683 -10.62126 -10.45785 -10.31085 -9.63039 -9.58340 -9.11374 -8.86915 -8.67134 -8.60825 -8.36972 -8.09126 -6.50776 -3.92744 1.17400 1.20766 2.70138 3.11921 3.22257 3.27590 3.39712 3.61286 3.76210 4.03056 4.17732 4.36059 4.48450 4.56590 4.66329 4.75598 4.80593 4.90671 4.93369 4.98877 5.13903 5.17953 5.21770 5.30839 5.32330 5.46644 5.51756 5.57548 5.62892 5.71664 5.79420 5.85060 5.88841 5.91285 5.99048 6.02312 6.09201 6.15193 6.23553 6.25934 6.32004 6.42091 6.53148 6.67680 6.81579 6.92853 7.23001 7.46548 7.93235 8.22201 8.46158 8.85042 9.05409 9.40444 9.88402 10.66124 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.001995 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.557440 B =14031.199503 C =14654.643500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 H 0.075 0.925 4 C -0.062 4.062 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.113 4.113 10 C 0.169 3.831 11 H 0.074 0.926 12 C -0.126 4.126 13 C -0.132 4.132 14 C 0.097 3.903 15 N -0.633 5.633 16 C 0.715 3.285 17 O -0.580 6.580 18 N -0.724 5.724 19 C 0.130 3.870 20 C 0.429 3.571 21 O -0.598 6.598 22 N -0.549 5.549 23 C -0.304 4.304 24 H 0.105 0.895 25 C 0.025 3.975 26 N -0.895 5.895 27 Si 0.933 3.067 28 H -0.277 1.277 29 H -0.283 1.283 30 H -0.269 1.269 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.405 0.595 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.396 0.604 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -11.011 -18.896 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 H 0.093 0.907 4 C -0.063 4.063 5 C -0.137 4.137 6 C -0.137 4.137 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.131 4.131 10 C 0.064 3.936 11 H 0.092 0.908 12 C -0.164 4.164 13 C -0.170 4.170 14 C -0.026 4.026 15 N -0.372 5.372 16 C 0.418 3.582 17 O -0.459 6.459 18 N -0.382 5.382 19 C 0.001 3.999 20 C 0.214 3.786 21 O -0.485 6.485 22 N -0.184 5.184 23 C -0.434 4.434 24 H 0.123 0.877 25 C -0.178 4.178 26 N -0.535 5.535 27 Si 0.760 3.240 28 H -0.203 1.203 29 H -0.208 1.208 30 H -0.193 1.193 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.243 0.757 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.230 0.770 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.865 -11.005 -18.885 26.433 hybrid contribution -0.199 0.584 0.753 0.974 sum 14.665 -10.421 -18.132 25.543 Atomic orbital electron populations 1.22191 0.91845 1.05230 0.99227 1.20660 0.98034 0.98627 0.90838 0.90652 1.19861 0.96537 0.94044 0.95820 1.21078 0.98366 0.99779 0.94479 1.21110 1.00121 0.94884 0.97591 1.21106 0.99416 0.94848 0.99408 1.21141 0.98121 0.99830 0.94548 1.21043 0.99932 0.94370 0.97790 1.21463 0.94764 0.93943 0.83387 0.90797 1.22704 0.93855 1.02878 0.96937 1.22764 0.98871 0.99176 0.96177 1.22293 0.83873 0.98259 0.98163 1.47528 1.04139 1.57414 1.28072 1.15369 0.82372 0.79433 0.81065 1.90969 1.37591 1.60692 1.56605 1.44848 1.09970 1.57601 1.25735 1.20765 0.83654 0.99675 0.95787 1.19780 0.85565 0.85980 0.87228 1.90486 1.26975 1.63176 1.67866 1.41788 1.07180 1.46569 1.22897 1.19720 0.94986 1.28757 0.99927 0.87713 1.25327 0.94573 0.98039 0.99834 1.69618 0.97757 1.45593 1.40510 0.85811 0.77930 0.79550 0.80725 1.20290 1.20808 1.19346 0.91458 0.90130 0.95084 0.86307 0.86344 0.86451 0.86280 0.86094 0.90145 0.90416 0.90543 0.89866 0.90487 0.91467 0.75719 0.90084 0.90070 0.77024 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.20 37.16 0.27 -1.46 16 2 C -0.06 -0.69 2.20 -91.77 -0.20 -0.89 16 3 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 4 C -0.06 -0.61 3.55 -104.63 -0.37 -0.98 16 5 C -0.12 -1.07 9.67 -39.58 -0.38 -1.45 16 6 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 7 C -0.13 -1.02 10.05 -39.59 -0.40 -1.42 16 8 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 9 C -0.11 -1.07 8.92 -39.58 -0.35 -1.42 16 10 C 0.17 1.82 2.33 -66.96 -0.16 1.67 16 11 H 0.07 0.86 7.43 -51.93 -0.39 0.47 16 12 C -0.13 -1.02 5.64 -24.90 -0.14 -1.16 16 13 C -0.13 -1.02 7.09 -24.58 -0.17 -1.19 16 14 C 0.10 0.99 6.60 -2.53 -0.02 0.97 16 15 N -0.63 -8.05 3.07 -168.70 -0.52 -8.57 16 16 C 0.72 11.56 8.04 -86.93 -0.70 10.86 16 17 O -0.58 -10.46 11.20 5.29 0.06 -10.40 16 18 N -0.72 -12.36 5.49 -66.42 -0.36 -12.72 16 19 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 20 C 0.43 9.86 7.85 -10.99 -0.09 9.77 16 21 O -0.60 -15.32 15.24 5.55 0.08 -15.23 16 22 N -0.55 -13.65 5.29 -10.96 -0.06 -13.70 16 23 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 24 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 25 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 26 N -0.89 -23.92 13.05 55.50 0.72 -23.19 16 27 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 31 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 32 H 0.08 1.30 5.88 -51.93 -0.31 0.99 16 33 H 0.03 0.40 7.90 -51.93 -0.41 -0.01 16 34 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 1.11 7.62 -52.49 -0.40 0.71 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.61 7.66 -51.93 -0.40 0.21 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.82 7.26 -51.93 -0.38 0.44 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.40 6.89 5.90 -40.82 -0.24 6.65 16 46 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -30.82 393.30 -10.28 -41.10 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -7.33 Total: 16.20 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -3.78 Total: 5.07 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.22 Total: -58.19 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.14 Total: -25.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.82 -10.28 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922468032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.183 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds