Wall clock time and date at job start Wed Apr 1 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47111 * 240.00246 * 2 1 3 5 5 C 1.38228 * 120.00256 * 118.28041 * 4 2 1 6 6 C 1.38240 * 120.00163 * 179.72285 * 5 4 2 7 7 C 1.38228 * 119.99884 * 0.28270 * 6 5 4 8 8 C 1.38237 * 120.00350 * 359.97335 * 7 6 5 9 9 C 1.38239 * 119.99773 * 298.49588 * 4 2 1 10 10 C 1.52997 * 109.47156 * 119.99993 * 2 1 3 11 11 H 1.09001 * 109.87244 * 52.29499 * 10 2 1 12 12 C 1.54320 * 109.88238 * 173.30724 * 10 2 1 13 13 C 1.55159 * 102.94304 * 141.61450 * 12 10 2 14 14 C 1.54910 * 101.57838 * 324.49549 * 13 12 10 15 15 N 1.47018 * 109.88610 * 291.11909 * 10 2 1 16 16 C 1.34777 * 125.65152 * 61.59235 * 15 10 2 17 17 O 1.21590 * 119.99589 * 359.00684 * 16 15 10 18 18 N 1.34768 * 120.00317 * 179.00738 * 16 15 10 19 19 C 1.46501 * 120.00173 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47340 * 179.97438 * 19 18 16 21 21 O 1.21290 * 120.00216 * 0.02562 * 20 19 18 22 22 N 1.34781 * 120.00221 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00168 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00094 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99887 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00112 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46968 * 89.99758 * 27 25 23 29 29 H 1.48493 * 109.47151 * 209.99807 * 27 25 23 30 30 H 1.48498 * 109.47248 * 330.00117 * 27 25 23 31 31 H 1.09005 * 109.46782 * 205.25656 * 1 2 3 32 32 H 1.09001 * 109.46804 * 325.25300 * 1 2 3 33 33 H 1.08999 * 109.47200 * 85.25732 * 1 2 3 34 34 H 1.07998 * 120.00463 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.99999 * 180.25290 * 6 5 4 36 36 H 1.08006 * 120.00464 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00282 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.00194 * 0.06033 * 9 4 2 39 39 H 1.09006 * 110.72199 * 259.97386 * 12 10 2 40 40 H 1.08998 * 110.72088 * 23.25132 * 12 10 2 41 41 H 1.08999 * 111.00844 * 82.57268 * 13 12 10 42 42 H 1.09001 * 111.00263 * 206.38789 * 13 12 10 43 43 H 1.09000 * 110.36401 * 155.84844 * 14 13 12 44 44 H 1.08993 * 110.37055 * 278.17451 * 14 13 12 45 45 H 0.97000 * 120.00085 * 359.97438 * 18 16 15 46 46 H 1.09002 * 109.46975 * 300.00148 * 19 18 16 47 47 H 1.09003 * 109.47220 * 59.99855 * 19 18 16 48 48 H 0.96997 * 119.99616 * 359.97438 * 22 20 19 49 49 H 0.96999 * 119.99889 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.7975 -0.0287 -2.1582 6 6 3.2631 -0.6818 -3.2841 7 6 2.9586 -2.0151 -3.4851 8 6 2.1890 -2.6955 -2.5600 9 6 1.7242 -2.0426 -1.4337 10 6 2.0400 -0.7212 1.2492 11 1 1.5725 -1.7028 1.3272 12 6 3.5739 -0.8749 1.1771 13 6 4.0166 -0.6351 2.6447 14 6 3.0050 0.4453 3.1020 15 7 1.7371 0.0769 2.4462 16 6 0.5045 0.4165 2.8726 17 8 -0.4744 0.0718 2.2391 18 7 0.3569 1.1381 4.0012 19 6 -0.9829 1.5067 4.4651 20 6 -0.8718 2.3046 5.7387 21 8 0.2193 2.5424 6.2121 22 7 -1.9848 2.7540 6.3517 23 6 -1.8837 3.4803 7.5100 24 1 -0.9121 3.6927 7.9311 25 6 -3.0311 3.9440 8.1417 26 7 -4.2134 3.6859 7.6291 27 14 -2.8933 4.9342 9.7196 28 1 -2.7906 6.3786 9.3902 29 1 -4.0977 4.7019 10.5566 30 1 -1.6820 4.5096 10.4664 31 1 -0.3633 -0.9295 0.4385 32 1 -0.3633 0.8444 0.5857 33 1 -0.3633 0.0850 -1.0241 34 1 3.0357 1.0129 -2.0011 35 1 3.8643 -0.1503 -4.0069 36 1 3.3220 -2.5254 -4.3649 37 1 1.9508 -3.7371 -2.7173 38 1 1.1227 -2.5740 -0.7111 39 1 3.8460 -1.8789 0.8514 40 1 4.0061 -0.1235 0.5163 41 1 3.9125 -1.5438 3.2377 42 1 5.0383 -0.2578 2.6879 43 1 2.8915 0.4241 4.1859 44 1 3.3295 1.4324 2.7729 45 1 1.1378 1.4127 4.5069 46 1 -1.4792 2.1066 3.7022 47 1 -1.5640 0.6036 4.6521 48 1 -2.8574 2.5641 5.9729 49 1 -5.0143 4.0100 8.0698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922468032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:23 Heat of formation + Delta-G solvation = -48.938391 kcal Electronic energy + Delta-G solvation = -30117.184937 eV Core-core repulsion = 26043.527508 eV Total energy + Delta-G solvation = -4073.657429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.80882 -40.49547 -39.92620 -38.50700 -36.31001 -35.76235 -34.75478 -33.38393 -32.54178 -31.73647 -30.44329 -29.09222 -28.93967 -26.43305 -24.98120 -23.96151 -23.32407 -22.22865 -21.60144 -21.30066 -20.36315 -20.02172 -19.18612 -18.08430 -17.53965 -17.20976 -16.95983 -16.62376 -16.37217 -16.07260 -15.94784 -15.63832 -15.49215 -15.24670 -14.74091 -14.54844 -14.24628 -14.13037 -14.03460 -13.89032 -13.86972 -13.55586 -13.49064 -13.44810 -13.19794 -12.92560 -12.74582 -12.45858 -12.16908 -12.14128 -12.12277 -11.81603 -11.62758 -11.61333 -11.57346 -11.53121 -10.85916 -10.55654 -10.12386 -10.02469 -9.75590 -9.61078 -9.38834 -8.51153 -6.01415 0.50921 0.56556 1.36174 1.41863 1.51459 1.57712 1.89570 2.14711 2.27879 2.88439 2.96217 3.15974 3.19349 3.57819 3.66967 3.76036 3.91442 4.10933 4.18859 4.21397 4.23781 4.32025 4.35038 4.40811 4.43609 4.46439 4.55517 4.66564 4.70776 4.76033 4.80563 4.90610 4.98078 5.09811 5.10380 5.16804 5.18265 5.25544 5.31922 5.35496 5.38298 5.40352 5.62330 5.67900 5.70174 5.81648 5.92283 6.05813 6.18700 6.47855 6.96380 7.03198 7.42480 7.57882 7.94198 8.65755 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.001995 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.557440 B =14031.199503 C =14654.643500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 H 0.071 0.929 4 C -0.072 4.072 5 C -0.127 4.127 6 C -0.122 4.122 7 C -0.131 4.131 8 C -0.123 4.123 9 C -0.125 4.125 10 C 0.165 3.835 11 H 0.063 0.937 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.089 3.911 15 N -0.631 5.631 16 C 0.710 3.290 17 O -0.603 6.603 18 N -0.727 5.727 19 C 0.145 3.855 20 C 0.434 3.566 21 O -0.624 6.624 22 N -0.559 5.559 23 C -0.337 4.337 24 H 0.086 0.914 25 C -0.012 4.012 26 N -0.916 5.916 27 Si 0.998 3.002 28 H -0.270 1.270 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.405 0.595 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.399 0.601 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.984 -11.476 -19.995 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 H 0.089 0.911 4 C -0.072 4.072 5 C -0.145 4.145 6 C -0.140 4.140 7 C -0.149 4.149 8 C -0.141 4.141 9 C -0.143 4.143 10 C 0.061 3.939 11 H 0.081 0.919 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.034 4.034 15 N -0.368 5.368 16 C 0.413 3.587 17 O -0.484 6.484 18 N -0.385 5.385 19 C 0.016 3.984 20 C 0.221 3.779 21 O -0.512 6.512 22 N -0.195 5.195 23 C -0.466 4.466 24 H 0.104 0.896 25 C -0.212 4.212 26 N -0.556 5.556 27 Si 0.821 3.179 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.194 1.194 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.243 0.757 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.233 0.767 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.687 -11.489 -20.013 28.478 hybrid contribution -0.732 0.678 0.995 1.409 sum 15.955 -10.810 -19.019 27.076 Atomic orbital electron populations 1.21987 0.93969 1.02987 0.98362 1.20505 0.96040 0.98706 0.91995 0.91054 1.19712 0.97666 0.94267 0.95580 1.21228 0.98331 1.00238 0.94659 1.21398 0.99895 0.95167 0.97502 1.21434 0.98658 0.94912 0.99850 1.21383 0.97882 1.00744 0.94117 1.21096 1.00378 0.94391 0.98435 1.21623 0.96887 0.92967 0.82427 0.91865 1.22660 0.91262 1.03882 0.97430 1.22761 0.99265 0.98344 0.95506 1.22529 0.83310 0.99740 0.97772 1.47609 1.03839 1.56712 1.28631 1.15491 0.83327 0.79305 0.80609 1.90967 1.38837 1.61487 1.57078 1.44789 1.09177 1.58219 1.26289 1.20542 0.84901 0.99338 0.93611 1.20425 0.84645 0.85027 0.87840 1.90461 1.27901 1.63965 1.68915 1.41835 1.07761 1.47026 1.22846 1.19734 0.94737 1.30684 1.01424 0.89563 1.26148 0.93962 0.98499 1.02638 1.69687 0.98274 1.45986 1.41667 0.84854 0.78061 0.78134 0.76849 1.19558 1.19652 1.19429 0.93108 0.92911 0.95002 0.85589 0.84275 0.84212 0.84635 0.86661 0.88880 0.89647 0.90361 0.87345 0.91105 0.90681 0.75675 0.89208 0.89199 0.76724 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 7.20 71.98 0.52 -2.75 16 2 C -0.05 -1.17 2.20 -11.54 -0.03 -1.20 16 3 H 0.07 1.63 7.88 -2.39 -0.02 1.61 16 4 C -0.07 -1.34 3.55 -19.87 -0.07 -1.41 16 5 C -0.13 -2.06 9.67 22.27 0.22 -1.85 16 6 C -0.12 -1.66 10.05 22.27 0.22 -1.43 16 7 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 8 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 9 C -0.12 -2.24 8.92 22.27 0.20 -2.05 16 10 C 0.16 3.49 2.33 45.34 0.11 3.59 16 11 H 0.06 1.48 7.43 -2.39 -0.02 1.47 16 12 C -0.11 -1.63 5.64 31.78 0.18 -1.45 16 13 C -0.12 -1.59 7.09 31.99 0.23 -1.36 16 14 C 0.09 1.72 6.60 86.85 0.57 2.29 16 15 N -0.63 -15.99 3.07 -805.91 -2.47 -18.46 16 16 C 0.71 23.39 8.04 179.06 1.44 24.83 16 17 O -0.60 -22.47 11.20 -4.00 -0.04 -22.52 16 18 N -0.73 -25.19 5.49 -482.30 -2.65 -27.84 16 19 C 0.14 5.47 6.15 85.63 0.53 5.99 16 20 C 0.43 20.34 7.85 87.65 0.69 21.03 16 21 O -0.62 -32.62 15.24 -3.06 -0.05 -32.66 16 22 N -0.56 -28.41 5.29 -306.98 -1.62 -30.04 16 23 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 24 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 26 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 27 Si 1.00 41.95 29.55 68.60 2.03 43.97 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 31 H 0.05 1.57 6.68 -2.38 -0.02 1.56 16 32 H 0.05 1.78 5.88 -2.39 -0.01 1.76 16 33 H 0.03 0.85 7.90 -2.39 -0.02 0.83 16 34 H 0.13 1.80 7.95 -2.91 -0.02 1.78 16 35 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.12 2.13 7.62 -2.91 -0.02 2.10 16 39 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.08 1.12 7.66 -2.39 -0.02 1.11 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.47 7.26 -2.39 -0.02 1.45 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.41 14.01 5.90 -92.71 -0.55 13.46 16 46 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 49 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -67.03 393.30 1.70 -65.33 By element: Atomic # 1 Polarization: 48.08 SS G_CDS: -0.30 Total: 47.78 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.53 Total: 23.16 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -6.46 Total: -125.06 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.09 Total: -55.18 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.03 1.70 -65.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922468032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.390 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds