Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00010 * 2 1 4 4 N 1.34784 * 119.99927 * 179.97438 * 2 1 3 5 5 C 1.39924 * 119.99740 * 184.49203 * 4 2 1 6 6 C 1.38893 * 120.07166 * 325.29790 * 5 4 2 7 7 C 1.38097 * 119.92423 * 180.27424 * 6 5 4 8 8 C 1.38299 * 120.07286 * 359.72765 * 7 6 5 9 9 C 1.38261 * 120.13754 * 0.02562 * 8 7 6 10 10 C 1.38125 * 120.07754 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.04186 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47152 * 265.00572 * 11 10 9 13 13 O 1.21277 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99865 * 179.97438 * 12 11 10 15 15 C 1.47022 * 125.64663 * 179.97438 * 14 12 11 16 16 C 1.54324 * 107.27010 * 178.90496 * 15 14 12 17 17 H 1.09007 * 110.71812 * 96.34509 * 16 15 14 18 18 C 1.52993 * 110.72008 * 219.44308 * 16 15 14 19 19 C 1.55160 * 102.94190 * 337.80925 * 16 15 14 20 20 H 1.09000 * 111.00318 * 277.42510 * 19 16 15 21 21 N 1.46497 * 111.00795 * 153.57771 * 19 16 15 22 22 C 1.36933 * 120.00331 * 154.99711 * 21 19 16 23 23 H 1.07995 * 119.99865 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00125 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99716 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00048 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47303 * 89.99612 * 26 24 22 28 28 H 1.48500 * 109.47208 * 209.99705 * 26 24 22 29 29 H 1.48501 * 109.47258 * 329.99513 * 26 24 22 30 30 C 1.47419 * 125.64575 * 359.95686 * 14 12 11 31 31 H 1.09006 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47621 * 300.00212 * 1 2 3 33 33 H 1.08997 * 109.47074 * 60.00676 * 1 2 3 34 34 H 0.96998 * 119.99888 * 4.49781 * 4 2 1 35 35 H 1.07995 * 120.03604 * 0.04696 * 6 5 4 36 36 H 1.07994 * 119.96167 * 179.75042 * 7 6 5 37 37 H 1.08001 * 119.93367 * 180.02562 * 8 7 6 38 38 H 1.08004 * 119.96083 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47114 * 145.00450 * 11 10 9 40 40 H 1.09000 * 109.46669 * 25.00272 * 11 10 9 41 41 H 1.08995 * 109.88159 * 59.48583 * 15 14 12 42 42 H 1.08996 * 109.87856 * 298.31906 * 15 14 12 43 43 H 1.09002 * 109.47166 * 58.54533 * 18 16 15 44 44 H 1.09002 * 109.47513 * 178.54222 * 18 16 15 45 45 H 1.09001 * 109.47509 * 298.54412 * 18 16 15 46 46 H 0.97006 * 119.99520 * 334.99784 * 21 19 16 47 47 H 0.97003 * 120.00063 * 180.02562 * 25 24 22 48 48 H 1.09001 * 110.36980 * 323.00000 * 30 14 12 49 49 H 1.09001 * 110.36983 * 85.32845 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5769 -1.1690 0.0954 6 6 4.3163 -0.1560 -0.5013 7 6 5.6943 -0.1638 -0.4106 8 6 6.3377 -1.1758 0.2783 9 6 5.6041 -2.1828 0.8778 10 6 4.2256 -2.1809 0.7907 11 6 3.4268 -3.2792 1.4439 12 6 3.1300 -4.3549 0.4311 13 8 3.5274 -4.2407 -0.7090 14 7 2.4227 -5.4439 0.7923 15 6 2.0629 -6.5634 -0.0903 16 6 1.2819 -7.5858 0.7619 17 1 0.2073 -7.4421 0.6478 18 6 1.6774 -9.0159 0.3889 19 6 1.7340 -7.2506 2.2078 20 1 2.6877 -7.7251 2.4389 21 7 0.7090 -7.6355 3.1811 22 6 1.0627 -7.9123 4.4747 23 1 2.0973 -7.8471 4.7774 24 6 0.0914 -8.2776 5.3969 25 7 -1.1694 -8.3574 5.0278 26 14 0.5738 -8.6543 7.1617 27 1 0.5164 -7.4083 7.9673 28 1 -0.3660 -9.6544 7.7290 29 1 1.9546 -9.2001 7.1917 30 6 1.8823 -5.7099 2.1378 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.6981 -2.0060 -0.0650 35 1 3.8144 0.6349 -1.0388 36 1 6.2700 0.6214 -0.8778 37 1 7.4154 -1.1795 0.3483 38 1 6.1095 -2.9715 1.4154 39 1 2.4909 -2.8706 1.8248 40 1 3.9998 -3.7043 2.2680 41 1 2.9656 -7.0259 -0.4892 42 1 1.4356 -6.2050 -0.9065 43 1 2.7492 -9.1471 0.5381 44 1 1.1340 -9.7195 1.0195 45 1 1.4310 -9.2000 -0.6568 46 1 -0.2203 -7.6944 2.9092 47 1 -1.8481 -8.6123 5.6723 48 1 2.5771 -5.3607 2.9016 49 1 0.9114 -5.2293 2.2585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939333126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = -32.828953 kcal Electronic energy + Delta-G solvation = -30333.819485 eV Core-core repulsion = 26260.860613 eV Total energy + Delta-G solvation = -4072.958872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.93439 -39.85693 -38.64022 -37.51730 -34.98283 -34.16775 -33.03849 -32.33187 -31.08169 -30.80685 -29.02350 -27.94439 -27.58655 -25.74286 -24.03354 -23.21357 -22.06154 -21.35482 -20.61499 -19.99975 -19.13212 -17.89904 -17.30860 -17.13264 -16.94430 -16.29672 -15.88789 -15.64448 -15.27755 -14.97786 -14.57879 -14.39333 -14.10267 -13.76659 -13.65921 -13.28243 -13.16999 -13.08821 -13.02586 -12.93242 -12.88657 -12.64899 -12.37876 -12.16328 -11.93744 -11.72416 -11.55053 -11.39634 -11.18470 -11.08263 -10.80407 -10.68421 -10.50855 -10.32163 -10.06370 -10.02136 -9.92557 -9.76468 -9.10541 -8.81647 -8.45406 -8.22247 -7.18184 -5.93888 -3.24992 1.15931 1.34241 2.36039 2.67611 2.88044 3.11083 3.33448 3.39828 3.40935 3.75796 4.43079 4.45919 4.54622 4.65012 4.73511 4.86901 5.00826 5.02970 5.04497 5.09352 5.09714 5.15892 5.27257 5.35759 5.46493 5.49071 5.55369 5.55705 5.59436 5.66388 5.75256 5.83358 5.92827 5.94913 6.12676 6.14754 6.17420 6.27545 6.28236 6.37181 6.41261 6.43713 6.48334 6.54416 6.76500 6.94942 7.15451 7.54978 7.67128 7.85057 8.22214 8.25379 9.35718 9.88449 10.23288 11.27826 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002647 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.639761 B =10576.135974 C =10972.992500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.530 6.530 4 N -0.670 5.670 5 C 0.157 3.843 6 C -0.121 4.121 7 C -0.106 4.106 8 C -0.133 4.133 9 C -0.090 4.090 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.522 3.478 13 O -0.543 6.543 14 N -0.613 5.613 15 C 0.117 3.883 16 C -0.115 4.115 17 H 0.084 0.916 18 C -0.134 4.134 19 C 0.178 3.822 20 H 0.069 0.931 21 N -0.709 5.709 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.069 3.931 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.411 0.589 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.387 0.613 47 H 0.257 0.743 48 H 0.070 0.930 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 11.754 -11.008 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.406 6.406 4 N -0.316 5.316 5 C 0.063 3.937 6 C -0.141 4.141 7 C -0.124 4.124 8 C -0.152 4.152 9 C -0.109 4.109 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.347 5.347 15 C -0.006 4.006 16 C -0.135 4.135 17 H 0.102 0.898 18 C -0.191 4.191 19 C 0.065 3.935 20 H 0.087 0.913 21 N -0.348 5.348 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 C -0.057 4.057 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.221 0.779 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.733 12.579 -11.430 18.673 hybrid contribution -0.447 -0.706 1.031 1.327 sum 7.285 11.873 -10.398 17.383 Atomic orbital electron populations 1.21875 0.90622 1.04853 1.05746 1.21038 0.90955 0.83047 0.74934 1.90712 1.70425 1.31252 1.48258 1.43718 1.05467 1.09983 1.72403 1.17511 0.82345 0.96622 0.97178 1.21200 0.93814 0.99147 0.99914 1.21021 0.93939 0.98489 0.98996 1.21068 0.99815 0.95041 0.99275 1.20812 0.92326 0.98353 0.99367 1.19122 0.94071 0.96072 0.99559 1.20602 1.01863 0.93374 0.98197 1.20190 0.77948 0.81986 0.88901 1.90716 1.52323 1.78365 1.20654 1.48570 1.53189 1.19596 1.13295 1.21977 0.98967 0.86713 0.92979 1.22531 1.00130 0.94463 0.96368 0.89815 1.21653 1.01342 0.95560 1.00582 1.21365 0.94119 0.90091 0.87914 0.91321 1.42293 1.05415 1.80423 1.06714 1.19233 0.93404 1.39595 0.85889 0.90970 1.24761 0.95327 1.01836 0.98403 1.69652 0.99710 1.53827 1.34361 0.86197 0.77472 0.77774 0.84756 1.21563 1.21694 1.20630 1.23582 0.98537 1.01918 0.81695 0.90173 0.88106 0.88312 0.75285 0.84491 0.85892 0.85982 0.85736 0.88329 0.87408 0.91657 0.92065 0.92880 0.91379 0.93249 0.77854 0.93281 0.91149 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.39 36.00 0.37 -0.82 16 2 C 0.51 5.73 7.78 -10.98 -0.09 5.65 16 3 O -0.53 -7.75 14.52 5.55 0.08 -7.67 16 4 N -0.67 -7.63 4.78 -9.86 -0.05 -7.68 16 5 C 0.16 2.08 6.29 -83.69 -0.53 1.56 16 6 C -0.12 -1.60 8.70 -39.39 -0.34 -1.94 16 7 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 8 C -0.13 -1.46 10.04 -39.55 -0.40 -1.85 16 9 C -0.09 -1.06 9.67 -39.61 -0.38 -1.45 16 10 C -0.09 -1.09 4.39 -104.43 -0.46 -1.55 16 11 C -0.10 -1.18 4.25 -29.03 -0.12 -1.31 16 12 C 0.52 7.39 7.52 -10.98 -0.08 7.31 16 13 O -0.54 -9.29 16.36 5.56 0.09 -9.20 16 14 N -0.61 -8.57 3.33 -170.51 -0.57 -9.14 16 15 C 0.12 1.59 6.46 -3.06 -0.02 1.57 16 16 C -0.11 -1.65 3.19 -88.79 -0.28 -1.93 16 17 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 18 C -0.13 -1.79 9.13 37.15 0.34 -1.45 16 19 C 0.18 3.03 3.16 -65.77 -0.21 2.83 16 20 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 21 N -0.71 -15.52 5.24 -51.34 -0.27 -15.79 16 22 C -0.25 -6.25 9.96 -15.06 -0.15 -6.40 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -25.95 13.06 55.49 0.72 -25.23 16 26 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 C 0.07 1.03 6.39 -2.52 -0.02 1.01 16 31 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.16 7.52 -40.82 -0.31 3.86 16 35 H 0.14 1.88 6.20 -52.49 -0.33 1.55 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.10 1.04 7.45 -51.93 -0.39 0.66 16 40 H 0.11 1.13 7.75 -51.93 -0.40 0.73 16 41 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.39 9.10 7.77 -40.82 -0.32 8.79 16 47 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.07 1.02 7.47 -51.93 -0.39 0.63 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -31.73 404.22 -9.32 -41.06 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.55 Total: 12.35 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.86 Total: -0.66 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.16 Total: -57.84 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.17 Total: -16.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.73 -9.32 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939333126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.229 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds