Wall clock time and date at job start Wed Apr 1 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00010 * 2 1 4 4 N 1.34784 * 119.99927 * 179.97438 * 2 1 3 5 5 C 1.39924 * 119.99740 * 184.49203 * 4 2 1 6 6 C 1.38893 * 120.07166 * 325.29790 * 5 4 2 7 7 C 1.38097 * 119.92423 * 180.27424 * 6 5 4 8 8 C 1.38299 * 120.07286 * 359.72765 * 7 6 5 9 9 C 1.38261 * 120.13754 * 0.02562 * 8 7 6 10 10 C 1.38125 * 120.07754 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.04186 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47152 * 265.00572 * 11 10 9 13 13 O 1.21277 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99865 * 179.97438 * 12 11 10 15 15 C 1.47022 * 125.64663 * 179.97438 * 14 12 11 16 16 C 1.54324 * 107.27010 * 178.90496 * 15 14 12 17 17 H 1.09007 * 110.71812 * 96.34509 * 16 15 14 18 18 C 1.52993 * 110.72008 * 219.44308 * 16 15 14 19 19 C 1.55160 * 102.94190 * 337.80925 * 16 15 14 20 20 H 1.09000 * 111.00318 * 277.42510 * 19 16 15 21 21 N 1.46497 * 111.00795 * 153.57771 * 19 16 15 22 22 C 1.36933 * 120.00331 * 154.99711 * 21 19 16 23 23 H 1.07995 * 119.99865 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00125 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99716 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00048 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47303 * 89.99612 * 26 24 22 28 28 H 1.48500 * 109.47208 * 209.99705 * 26 24 22 29 29 H 1.48501 * 109.47258 * 329.99513 * 26 24 22 30 30 C 1.47419 * 125.64575 * 359.95686 * 14 12 11 31 31 H 1.09006 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47621 * 300.00212 * 1 2 3 33 33 H 1.08997 * 109.47074 * 60.00676 * 1 2 3 34 34 H 0.96998 * 119.99888 * 4.49781 * 4 2 1 35 35 H 1.07995 * 120.03604 * 0.04696 * 6 5 4 36 36 H 1.07994 * 119.96167 * 179.75042 * 7 6 5 37 37 H 1.08001 * 119.93367 * 180.02562 * 8 7 6 38 38 H 1.08004 * 119.96083 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47114 * 145.00450 * 11 10 9 40 40 H 1.09000 * 109.46669 * 25.00272 * 11 10 9 41 41 H 1.08995 * 109.88159 * 59.48583 * 15 14 12 42 42 H 1.08996 * 109.87856 * 298.31906 * 15 14 12 43 43 H 1.09002 * 109.47166 * 58.54533 * 18 16 15 44 44 H 1.09002 * 109.47513 * 178.54222 * 18 16 15 45 45 H 1.09001 * 109.47509 * 298.54412 * 18 16 15 46 46 H 0.97006 * 119.99520 * 334.99784 * 21 19 16 47 47 H 0.97003 * 120.00063 * 180.02562 * 25 24 22 48 48 H 1.09001 * 110.36980 * 323.00000 * 30 14 12 49 49 H 1.09001 * 110.36983 * 85.32845 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5769 -1.1690 0.0954 6 6 4.3163 -0.1560 -0.5013 7 6 5.6943 -0.1638 -0.4106 8 6 6.3377 -1.1758 0.2783 9 6 5.6041 -2.1828 0.8778 10 6 4.2256 -2.1809 0.7907 11 6 3.4268 -3.2792 1.4439 12 6 3.1300 -4.3549 0.4311 13 8 3.5274 -4.2407 -0.7090 14 7 2.4227 -5.4439 0.7923 15 6 2.0629 -6.5634 -0.0903 16 6 1.2819 -7.5858 0.7619 17 1 0.2073 -7.4421 0.6478 18 6 1.6774 -9.0159 0.3889 19 6 1.7340 -7.2506 2.2078 20 1 2.6877 -7.7251 2.4389 21 7 0.7090 -7.6355 3.1811 22 6 1.0627 -7.9123 4.4747 23 1 2.0973 -7.8471 4.7774 24 6 0.0914 -8.2776 5.3969 25 7 -1.1694 -8.3574 5.0278 26 14 0.5738 -8.6543 7.1617 27 1 0.5164 -7.4083 7.9673 28 1 -0.3660 -9.6544 7.7290 29 1 1.9546 -9.2001 7.1917 30 6 1.8823 -5.7099 2.1378 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.6981 -2.0060 -0.0650 35 1 3.8144 0.6349 -1.0388 36 1 6.2700 0.6214 -0.8778 37 1 7.4154 -1.1795 0.3483 38 1 6.1095 -2.9715 1.4154 39 1 2.4909 -2.8706 1.8248 40 1 3.9998 -3.7043 2.2680 41 1 2.9656 -7.0259 -0.4892 42 1 1.4356 -6.2050 -0.9065 43 1 2.7492 -9.1471 0.5381 44 1 1.1340 -9.7195 1.0195 45 1 1.4310 -9.2000 -0.6568 46 1 -0.2203 -7.6944 2.9092 47 1 -1.8481 -8.6123 5.6723 48 1 2.5771 -5.3607 2.9016 49 1 0.9114 -5.2293 2.2585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939333126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:40 Heat of formation + Delta-G solvation = -51.954981 kcal Electronic energy + Delta-G solvation = -30334.648852 eV Core-core repulsion = 26260.860613 eV Total energy + Delta-G solvation = -4073.788239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87517 -40.98081 -39.61400 -38.72802 -35.90391 -35.82672 -34.17369 -33.49512 -32.44953 -31.84699 -29.84912 -29.12881 -28.80708 -26.80412 -25.78391 -24.09791 -23.24740 -22.47280 -21.49591 -21.29444 -20.24488 -19.11013 -18.77924 -18.10576 -17.98754 -17.48934 -16.80753 -16.73125 -16.38862 -16.29849 -15.74278 -15.41783 -15.32650 -15.23048 -14.63424 -14.52989 -14.40674 -14.27480 -14.10967 -14.07899 -13.66274 -13.45204 -13.28409 -13.07734 -13.04854 -13.00939 -12.86456 -12.82145 -12.44088 -12.29449 -12.16886 -12.10759 -11.97782 -11.68235 -11.42014 -11.39516 -11.05552 -10.92507 -10.87197 -9.74819 -9.65970 -9.13259 -9.00211 -7.91958 -5.20718 0.25757 0.41975 1.50968 1.52227 1.53438 1.56292 1.60661 1.97786 2.07095 2.59100 2.83396 3.40025 3.45394 3.61227 3.73041 3.81704 3.87601 3.93203 3.97808 4.16490 4.21356 4.27005 4.34402 4.40507 4.43787 4.50293 4.52224 4.57664 4.60868 4.66106 4.69138 4.72851 4.90745 4.94141 4.99302 5.06280 5.13127 5.15843 5.24124 5.30603 5.37484 5.39766 5.48172 5.53218 5.59006 5.59183 6.06692 6.29175 6.31215 6.51366 7.00196 7.11256 7.37666 8.09390 8.33101 9.30668 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002647 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.639761 B =10576.135974 C =10972.992500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.570 6.570 4 N -0.667 5.667 5 C 0.139 3.861 6 C -0.143 4.143 7 C -0.109 4.109 8 C -0.135 4.135 9 C -0.099 4.099 10 C -0.100 4.100 11 C -0.094 4.094 12 C 0.527 3.473 13 O -0.571 6.571 14 N -0.610 5.610 15 C 0.120 3.880 16 C -0.105 4.105 17 H 0.080 0.920 18 C -0.130 4.130 19 C 0.170 3.830 20 H 0.064 0.936 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.079 0.921 24 C -0.067 4.067 25 N -0.965 5.965 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.270 1.270 30 C 0.083 3.917 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.377 0.623 47 H 0.250 0.750 48 H 0.079 0.921 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 11.894 -11.156 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.449 6.449 4 N -0.312 5.312 5 C 0.044 3.956 6 C -0.163 4.163 7 C -0.128 4.128 8 C -0.153 4.153 9 C -0.118 4.118 10 C -0.103 4.103 11 C -0.134 4.134 12 C 0.316 3.684 13 O -0.451 6.451 14 N -0.343 5.343 15 C -0.003 4.003 16 C -0.125 4.125 17 H 0.098 0.902 18 C -0.187 4.187 19 C 0.060 3.940 20 H 0.082 0.918 21 N -0.357 5.357 22 C -0.370 4.370 23 H 0.097 0.903 24 C -0.260 4.260 25 N -0.615 5.615 26 Si 0.794 3.206 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.195 1.195 30 C -0.043 4.043 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.210 0.790 47 H 0.059 0.941 48 H 0.098 0.902 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.000 12.713 -11.601 19.422 hybrid contribution -0.734 -0.732 0.969 1.419 sum 8.266 11.981 -10.631 18.025 Atomic orbital electron populations 1.21926 0.87220 1.06444 1.06753 1.21823 0.92527 0.82298 0.73687 1.90690 1.71564 1.32523 1.50154 1.43768 1.05033 1.10368 1.72049 1.17761 0.83249 0.96967 0.97575 1.21283 0.94851 0.99315 1.00854 1.21334 0.93468 0.99228 0.98760 1.21412 1.01261 0.94299 0.98327 1.21165 0.92244 0.99022 0.99347 1.19289 0.94716 0.96229 1.00027 1.20603 1.02621 0.92417 0.97736 1.20516 0.77040 0.82002 0.88825 1.90710 1.53444 1.78909 1.22053 1.48535 1.53102 1.19815 1.12823 1.21967 0.99092 0.86362 0.92902 1.22425 1.00031 0.95444 0.94552 0.90160 1.21615 1.01327 0.94225 1.01555 1.21524 0.92716 0.91405 0.88399 0.91792 1.42376 1.05855 1.80837 1.06669 1.19588 0.93450 1.36992 0.86999 0.90306 1.25431 0.95473 1.03337 1.01746 1.69787 1.00522 1.56164 1.35035 0.85281 0.77228 0.77112 0.80969 1.21552 1.22833 1.19521 1.23241 0.98803 0.99837 0.82435 0.88296 0.87151 0.87067 0.74694 0.85807 0.83811 0.83225 0.84017 0.87188 0.85815 0.91310 0.91223 0.92361 0.93427 0.90992 0.79035 0.94098 0.90218 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.39 71.23 0.74 -1.31 16 2 C 0.51 11.19 7.78 87.65 0.68 11.87 16 3 O -0.57 -17.01 14.52 -3.05 -0.04 -17.05 16 4 N -0.67 -14.85 4.78 -303.49 -1.45 -16.30 16 5 C 0.14 3.62 6.29 38.15 0.24 3.86 16 6 C -0.14 -3.81 8.70 22.39 0.19 -3.61 16 7 C -0.11 -2.40 10.04 22.25 0.22 -2.18 16 8 C -0.13 -2.68 10.04 22.29 0.22 -2.46 16 9 C -0.10 -2.16 9.67 22.25 0.22 -1.95 16 10 C -0.10 -2.41 4.39 -19.74 -0.09 -2.50 16 11 C -0.09 -2.03 4.25 29.10 0.12 -1.91 16 12 C 0.53 13.89 7.52 87.66 0.66 14.55 16 13 O -0.57 -18.71 16.36 -3.02 -0.05 -18.76 16 14 N -0.61 -15.76 3.33 -811.77 -2.70 -18.46 16 15 C 0.12 3.01 6.46 86.73 0.56 3.57 16 16 C -0.10 -2.84 3.19 -9.61 -0.03 -2.87 16 17 H 0.08 2.27 8.01 -2.38 -0.02 2.25 16 18 C -0.13 -3.26 9.13 71.98 0.66 -2.60 16 19 C 0.17 5.57 3.16 46.39 0.15 5.72 16 20 H 0.06 2.17 7.99 -2.39 -0.02 2.16 16 21 N -0.72 -31.07 5.24 -316.34 -1.66 -32.73 16 22 C -0.24 -11.73 9.96 84.04 0.84 -10.89 16 23 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 25 N -0.96 -54.58 13.06 21.65 0.28 -54.30 16 26 Si 0.96 42.83 29.55 68.60 2.03 44.86 16 27 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 30 C 0.08 2.30 6.39 86.86 0.55 2.86 16 31 H 0.10 0.86 7.92 -2.38 -0.02 0.84 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.42 8.03 7.52 -92.71 -0.70 7.34 16 35 H 0.12 3.55 6.20 -2.91 -0.02 3.53 16 36 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.11 2.11 7.45 -2.39 -0.02 2.09 16 40 H 0.12 2.27 7.75 -2.39 -0.02 2.25 16 41 H 0.07 1.72 7.82 -2.39 -0.02 1.70 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.38 17.79 7.77 -92.70 -0.72 17.07 16 47 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 48 H 0.08 2.10 7.47 -2.39 -0.02 2.08 16 49 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.57 404.22 2.37 -66.20 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.44 Total: 39.44 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.41 Total: 7.11 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -5.53 Total: -121.79 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.09 Total: -35.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.57 2.37 -66.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939333126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.243 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds