Wall clock time and date at job start Wed Apr 1 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.91839 * 2 1 4 4 C 1.55121 * 111.15983 * 236.07419 * 2 1 3 5 5 N 1.47423 * 104.94622 * 205.12958 * 4 2 1 6 6 C 1.34776 * 125.65350 * 203.97042 * 5 4 2 7 7 O 1.21594 * 119.99923 * 355.16546 * 6 5 4 8 8 C 1.47528 * 120.00214 * 175.16178 * 6 5 4 9 9 C 1.39743 * 120.76397 * 45.83104 * 8 6 5 10 10 C 1.38896 * 118.86771 * 179.88269 * 9 8 6 11 11 C 1.37845 * 119.43884 * 359.92916 * 10 9 8 12 12 N 1.32757 * 120.42463 * 0.24109 * 11 10 9 13 13 C 1.31858 * 122.57767 * 359.47153 * 12 11 10 14 14 O 1.35421 * 119.88861 * 180.34410 * 13 12 11 15 15 C 1.50799 * 122.25347 * 180.41338 * 11 10 9 16 16 C 1.52704 * 110.59388 * 342.05497 * 15 11 10 17 17 C 1.53328 * 108.41870 * 51.40277 * 16 15 11 18 18 C 1.50552 * 117.75531 * 179.71389 * 10 9 8 19 19 C 1.47025 * 108.70099 * 24.00159 * 5 4 2 20 20 C 1.54330 * 107.26925 * 358.94384 * 19 5 4 21 21 H 1.09007 * 110.71640 * 96.34565 * 20 19 5 22 22 N 1.46491 * 110.71690 * 219.43915 * 20 19 5 23 23 C 1.36942 * 120.00434 * 271.15602 * 22 20 19 24 24 H 1.08002 * 119.99725 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00562 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99889 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00251 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47043 * 90.00200 * 27 25 23 29 29 H 1.48502 * 109.46996 * 209.99779 * 27 25 23 30 30 H 1.48497 * 109.46913 * 329.99893 * 27 25 23 31 31 H 1.09005 * 109.46891 * 296.09212 * 1 2 3 32 32 H 1.08990 * 109.47210 * 56.09715 * 1 2 3 33 33 H 1.09001 * 109.46792 * 176.09562 * 1 2 3 34 34 H 1.09008 * 110.42081 * 86.20394 * 4 2 1 35 35 H 1.08999 * 110.30448 * 324.00214 * 4 2 1 36 36 H 1.07990 * 120.56855 * 359.85740 * 9 8 6 37 37 H 0.96701 * 114.00283 * 270.28349 * 14 13 12 38 38 H 1.09001 * 109.24726 * 221.76958 * 15 11 10 39 39 H 1.08994 * 109.22435 * 102.32819 * 15 11 10 40 40 H 1.08994 * 109.67502 * 291.66871 * 16 15 11 41 41 H 1.09001 * 109.67051 * 171.13206 * 16 15 11 42 42 H 1.09002 * 109.68527 * 170.32715 * 17 16 15 43 43 H 1.09003 * 109.72202 * 49.76803 * 17 16 15 44 44 H 1.08999 * 109.25069 * 282.98188 * 18 10 9 45 45 H 1.09003 * 109.25193 * 42.41331 * 18 10 9 46 46 H 1.08998 * 109.88833 * 239.52221 * 19 5 4 47 47 H 1.09001 * 110.01001 * 118.42919 * 19 5 4 48 48 H 0.97005 * 120.00393 * 90.88822 * 22 20 19 49 49 H 0.96995 * 120.00309 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7707 6 6 4.4511 -1.5689 -1.5893 7 8 4.2811 -1.5925 -2.7931 8 6 5.7752 -1.8922 -1.0249 9 6 5.8952 -2.7547 0.0680 10 6 7.1613 -3.0338 0.5662 11 6 8.2647 -2.4580 -0.0265 12 7 8.1213 -1.6394 -1.0617 13 6 6.9435 -1.3455 -1.5767 14 8 6.8609 -0.5087 -2.6382 15 6 9.6683 -2.7239 0.4565 16 6 9.6497 -3.2997 1.8707 17 6 8.6856 -4.4917 1.8957 18 6 7.2610 -3.9609 1.7482 19 6 3.4673 -1.2781 0.6987 20 6 2.0862 -0.8080 1.2021 21 1 1.4452 -1.6616 1.4228 22 7 2.2288 0.0494 2.3814 23 6 2.2504 -0.5058 3.6330 24 1 2.1626 -1.5758 3.7507 25 6 2.3849 0.3066 4.7505 26 7 2.4913 1.6107 4.6071 27 14 2.4151 -0.4508 6.4578 28 1 3.8155 -0.7737 6.8313 29 1 1.8513 0.5130 7.4368 30 1 1.6023 -1.6936 6.4623 31 1 -0.3633 0.4520 0.9230 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1642 -0.1732 -2.0838 35 1 1.4552 -1.6694 -1.4054 36 1 5.0184 -3.1964 0.5179 37 1 6.7734 0.4239 -2.3980 38 1 10.2313 -1.7906 0.4558 39 1 10.1501 -3.4347 -0.2147 40 1 9.3100 -2.5381 2.5725 41 1 10.6510 -3.6317 2.1448 42 1 8.7834 -5.0231 2.8424 43 1 8.9134 -5.1665 1.0705 44 1 6.9832 -3.4206 2.6532 45 1 6.5782 -4.7986 1.6065 46 1 4.2435 -0.6058 1.0640 47 1 3.6625 -2.2928 1.0457 48 1 2.3119 1.0100 2.2755 49 1 2.5850 2.1784 5.3879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939376604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:12 Heat of formation + Delta-G solvation = -35.493845 kcal Electronic energy + Delta-G solvation = -31084.071542 eV Core-core repulsion = 27010.997112 eV Total energy + Delta-G solvation = -4073.074430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.15141 -39.61876 -38.17495 -37.31581 -35.74361 -34.18809 -33.68480 -32.42106 -30.83270 -30.30784 -29.69474 -27.63750 -26.44467 -24.73848 -24.00612 -23.55528 -22.77590 -21.72836 -20.50429 -20.03249 -19.41740 -18.41023 -17.31279 -17.14717 -17.00925 -16.04892 -15.74695 -15.63266 -15.14769 -14.66276 -14.45046 -14.10667 -14.05233 -13.90299 -13.63063 -13.55045 -13.27895 -13.10661 -12.97270 -12.78843 -12.58548 -12.45234 -12.10299 -11.87037 -11.71652 -11.59223 -11.21064 -11.18105 -11.09024 -10.99736 -10.96895 -10.82099 -10.66957 -10.33133 -10.12127 -10.00283 -9.81480 -9.77461 -9.41659 -9.06868 -8.72652 -8.39104 -7.17810 -5.92824 -3.24095 0.62695 1.01329 2.74771 3.04111 3.32576 3.35826 3.38902 3.40452 3.62766 4.25973 4.36051 4.44686 4.55126 4.64217 4.65855 4.69701 4.85387 4.98321 5.06650 5.15372 5.19417 5.28954 5.36221 5.40984 5.46402 5.48072 5.54475 5.59954 5.66185 5.71708 5.75842 5.76026 5.81171 5.84062 5.90163 5.93367 6.06805 6.07982 6.13438 6.18111 6.28787 6.34766 6.40506 6.48194 6.55429 6.78464 7.41735 7.54596 7.66209 7.77916 8.23473 8.26522 9.36429 9.89712 10.24584 11.28987 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.004205 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.977565 B = 6657.615436 C = 9293.313821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.577 3.423 7 O -0.529 6.529 8 C -0.189 4.189 9 C -0.029 4.029 10 C -0.139 4.139 11 C 0.174 3.826 12 N -0.510 5.510 13 C 0.361 3.639 14 O -0.467 6.467 15 C -0.070 4.070 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.078 4.078 19 C 0.069 3.931 20 C 0.177 3.823 21 H 0.069 0.931 22 N -0.710 5.710 23 C -0.250 4.250 24 H 0.072 0.928 25 C -0.006 4.006 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.400 0.600 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.387 0.613 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -8.967 -7.164 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.364 3.636 7 O -0.407 6.407 8 C -0.196 4.196 9 C -0.055 4.055 10 C -0.141 4.141 11 C 0.038 3.962 12 N -0.229 5.229 13 C 0.178 3.822 14 O -0.273 6.273 15 C -0.107 4.107 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.115 4.115 19 C -0.056 4.056 20 C 0.065 3.935 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.381 4.381 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.165 0.835 37 H 0.259 0.741 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.221 0.779 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.622 -9.172 -8.409 15.729 hybrid contribution -0.667 0.144 1.501 1.649 sum 8.955 -9.028 -6.908 14.471 Atomic orbital electron populations 1.21601 0.93701 1.01591 1.02170 1.22673 0.96414 0.99762 0.94498 0.89824 1.22321 0.82459 0.98170 0.97799 1.48444 1.11962 1.65665 1.08052 1.17508 0.82779 0.77645 0.85649 1.90802 1.83324 1.52498 1.14041 1.20911 0.94569 1.04976 0.99103 1.21885 0.98134 0.93694 0.91796 1.20410 0.92669 1.01089 0.99897 1.20963 0.95755 0.90177 0.89323 1.67043 1.27096 1.17002 1.11754 1.18835 0.86225 0.91572 0.85524 1.84770 1.94697 1.20684 1.27183 1.20442 0.90958 1.02571 0.96762 1.21599 1.00163 0.98171 0.95969 1.21575 0.94130 0.97658 1.02460 1.20447 0.98119 0.97486 0.95460 1.23518 1.03613 1.01019 0.77487 1.21255 0.91384 0.93920 0.86977 0.91350 1.42364 1.86685 1.05710 1.00250 1.19222 1.43379 0.92167 0.83308 0.90990 1.24756 1.02204 0.95356 0.97963 1.69654 1.56080 1.02539 1.29255 0.86216 0.77664 0.78067 0.84374 1.21602 1.21675 1.20611 0.91250 0.93114 0.92814 0.90837 0.91485 0.83497 0.74138 0.89396 0.89563 0.91004 0.90696 0.90854 0.91512 0.89569 0.90284 0.90881 0.92286 0.77860 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.32 37.16 0.35 -1.44 16 2 C -0.11 -1.71 3.27 -88.36 -0.29 -2.00 16 3 H 0.08 1.34 8.01 -51.93 -0.42 0.92 16 4 C 0.12 1.67 6.37 -2.41 -0.02 1.65 16 5 N -0.61 -9.63 3.33 -171.61 -0.57 -10.20 16 6 C 0.58 9.87 7.21 -12.47 -0.09 9.78 16 7 O -0.53 -10.55 16.72 -6.12 -0.10 -10.65 16 8 C -0.19 -2.97 5.46 -104.78 -0.57 -3.54 16 9 C -0.03 -0.40 8.24 -38.78 -0.32 -0.72 16 10 C -0.14 -1.70 5.74 -104.59 -0.60 -2.30 16 11 C 0.17 2.22 6.63 -82.29 -0.55 1.67 16 12 N -0.51 -7.65 10.18 -9.20 -0.09 -7.74 16 13 C 0.36 5.69 7.75 -16.77 -0.13 5.56 16 14 O -0.47 -7.03 12.55 -29.35 -0.37 -7.40 16 15 C -0.07 -0.66 5.91 -27.99 -0.17 -0.82 16 16 C -0.12 -0.94 5.97 -26.71 -0.16 -1.10 16 17 C -0.12 -0.92 5.98 -26.69 -0.16 -1.08 16 18 C -0.08 -0.73 5.67 -28.09 -0.16 -0.89 16 19 C 0.07 1.13 5.37 -3.06 -0.02 1.12 16 20 C 0.18 3.11 3.06 -66.10 -0.20 2.91 16 21 H 0.07 1.21 8.00 -51.92 -0.42 0.79 16 22 N -0.71 -15.91 5.16 -51.65 -0.27 -16.17 16 23 C -0.25 -6.27 9.97 -15.06 -0.15 -6.42 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 26 N -0.93 -26.25 13.06 55.49 0.72 -25.53 16 27 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 1.06 8.09 -51.92 -0.42 0.64 16 35 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 36 H 0.15 1.82 5.84 -52.49 -0.31 1.52 16 37 H 0.40 4.20 9.06 45.56 0.41 4.62 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 47 H 0.06 0.89 5.95 -51.93 -0.31 0.58 16 48 H 0.39 9.40 7.74 -40.82 -0.32 9.08 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -32.04 393.51 -9.88 -41.93 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.79 Total: 11.84 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.32 Total: 2.14 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.21 Total: -59.65 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.47 Total: -18.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.04 -9.88 -41.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939376604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.433 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds