Wall clock time and date at job start Wed Apr 1 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.91839 * 2 1 4 4 C 1.55121 * 111.15983 * 236.07419 * 2 1 3 5 5 N 1.47423 * 104.94622 * 205.12958 * 4 2 1 6 6 C 1.34776 * 125.65350 * 203.97042 * 5 4 2 7 7 O 1.21594 * 119.99923 * 355.16546 * 6 5 4 8 8 C 1.47528 * 120.00214 * 175.16178 * 6 5 4 9 9 C 1.39743 * 120.76397 * 45.83104 * 8 6 5 10 10 C 1.38896 * 118.86771 * 179.88269 * 9 8 6 11 11 C 1.37845 * 119.43884 * 359.92916 * 10 9 8 12 12 N 1.32757 * 120.42463 * 0.24109 * 11 10 9 13 13 C 1.31858 * 122.57767 * 359.47153 * 12 11 10 14 14 O 1.35421 * 119.88861 * 180.34410 * 13 12 11 15 15 C 1.50799 * 122.25347 * 180.41338 * 11 10 9 16 16 C 1.52704 * 110.59388 * 342.05497 * 15 11 10 17 17 C 1.53328 * 108.41870 * 51.40277 * 16 15 11 18 18 C 1.50552 * 117.75531 * 179.71389 * 10 9 8 19 19 C 1.47025 * 108.70099 * 24.00159 * 5 4 2 20 20 C 1.54330 * 107.26925 * 358.94384 * 19 5 4 21 21 H 1.09007 * 110.71640 * 96.34565 * 20 19 5 22 22 N 1.46491 * 110.71690 * 219.43915 * 20 19 5 23 23 C 1.36942 * 120.00434 * 271.15602 * 22 20 19 24 24 H 1.08002 * 119.99725 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00562 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99889 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00251 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47043 * 90.00200 * 27 25 23 29 29 H 1.48502 * 109.46996 * 209.99779 * 27 25 23 30 30 H 1.48497 * 109.46913 * 329.99893 * 27 25 23 31 31 H 1.09005 * 109.46891 * 296.09212 * 1 2 3 32 32 H 1.08990 * 109.47210 * 56.09715 * 1 2 3 33 33 H 1.09001 * 109.46792 * 176.09562 * 1 2 3 34 34 H 1.09008 * 110.42081 * 86.20394 * 4 2 1 35 35 H 1.08999 * 110.30448 * 324.00214 * 4 2 1 36 36 H 1.07990 * 120.56855 * 359.85740 * 9 8 6 37 37 H 0.96701 * 114.00283 * 270.28349 * 14 13 12 38 38 H 1.09001 * 109.24726 * 221.76958 * 15 11 10 39 39 H 1.08994 * 109.22435 * 102.32819 * 15 11 10 40 40 H 1.08994 * 109.67502 * 291.66871 * 16 15 11 41 41 H 1.09001 * 109.67051 * 171.13206 * 16 15 11 42 42 H 1.09002 * 109.68527 * 170.32715 * 17 16 15 43 43 H 1.09003 * 109.72202 * 49.76803 * 17 16 15 44 44 H 1.08999 * 109.25069 * 282.98188 * 18 10 9 45 45 H 1.09003 * 109.25193 * 42.41331 * 18 10 9 46 46 H 1.08998 * 109.88833 * 239.52221 * 19 5 4 47 47 H 1.09001 * 110.01001 * 118.42919 * 19 5 4 48 48 H 0.97005 * 120.00393 * 90.88822 * 22 20 19 49 49 H 0.96995 * 120.00309 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7707 6 6 4.4511 -1.5689 -1.5893 7 8 4.2811 -1.5925 -2.7931 8 6 5.7752 -1.8922 -1.0249 9 6 5.8952 -2.7547 0.0680 10 6 7.1613 -3.0338 0.5662 11 6 8.2647 -2.4580 -0.0265 12 7 8.1213 -1.6394 -1.0617 13 6 6.9435 -1.3455 -1.5767 14 8 6.8609 -0.5087 -2.6382 15 6 9.6683 -2.7239 0.4565 16 6 9.6497 -3.2997 1.8707 17 6 8.6856 -4.4917 1.8957 18 6 7.2610 -3.9609 1.7482 19 6 3.4673 -1.2781 0.6987 20 6 2.0862 -0.8080 1.2021 21 1 1.4452 -1.6616 1.4228 22 7 2.2288 0.0494 2.3814 23 6 2.2504 -0.5058 3.6330 24 1 2.1626 -1.5758 3.7507 25 6 2.3849 0.3066 4.7505 26 7 2.4913 1.6107 4.6071 27 14 2.4151 -0.4508 6.4578 28 1 3.8155 -0.7737 6.8313 29 1 1.8513 0.5130 7.4368 30 1 1.6023 -1.6936 6.4623 31 1 -0.3633 0.4520 0.9230 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1642 -0.1732 -2.0838 35 1 1.4552 -1.6694 -1.4054 36 1 5.0184 -3.1964 0.5179 37 1 6.7734 0.4239 -2.3980 38 1 10.2313 -1.7906 0.4558 39 1 10.1501 -3.4347 -0.2147 40 1 9.3100 -2.5381 2.5725 41 1 10.6510 -3.6317 2.1448 42 1 8.7834 -5.0231 2.8424 43 1 8.9134 -5.1665 1.0705 44 1 6.9832 -3.4206 2.6532 45 1 6.5782 -4.7986 1.6065 46 1 4.2435 -0.6058 1.0640 47 1 3.6625 -2.2928 1.0457 48 1 2.3119 1.0100 2.2755 49 1 2.5850 2.1784 5.3879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939376604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:11 Heat of formation + Delta-G solvation = -57.721845 kcal Electronic energy + Delta-G solvation = -31085.035420 eV Core-core repulsion = 27010.997112 eV Total energy + Delta-G solvation = -4074.038308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.24873 -40.87229 -39.28845 -38.62814 -36.64546 -35.87549 -34.82347 -33.73803 -32.50617 -31.29983 -30.55381 -29.19648 -27.59990 -26.07127 -25.40131 -24.58374 -23.71446 -23.06546 -21.49119 -21.37811 -20.57007 -19.48990 -19.08667 -18.36657 -18.20960 -17.17887 -17.07053 -16.90899 -16.31381 -16.05400 -15.52901 -15.38879 -15.24028 -14.93186 -14.81852 -14.74128 -14.53980 -14.16993 -14.11791 -13.89735 -13.77076 -13.63965 -13.35313 -13.00726 -12.93169 -12.84917 -12.82645 -12.57096 -12.23131 -12.16241 -12.03558 -11.83019 -11.76376 -11.68162 -11.66676 -11.44385 -11.25016 -10.95935 -10.82446 -10.50659 -9.83822 -9.64516 -9.05501 -7.92816 -5.22828 -0.46959 -0.05098 1.45649 1.51574 1.52421 1.60398 1.80537 2.28282 2.55443 2.58068 3.15271 3.38679 3.44722 3.46449 3.67575 3.71329 3.79933 3.85690 3.91635 4.03732 4.05501 4.20753 4.29714 4.34284 4.43116 4.44516 4.57516 4.60747 4.62109 4.63017 4.68894 4.76321 4.86880 4.88790 4.96831 5.03043 5.08373 5.11406 5.13018 5.19408 5.23382 5.28185 5.32334 5.45986 5.47933 5.48349 5.56888 6.26589 6.31800 6.41800 6.71215 6.92942 7.35379 8.06097 8.30160 9.30161 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.004205 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.977565 B = 6657.615436 C = 9293.313821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.580 3.420 7 O -0.562 6.562 8 C -0.211 4.211 9 C -0.032 4.032 10 C -0.137 4.137 11 C 0.168 3.832 12 N -0.527 5.527 13 C 0.345 3.655 14 O -0.481 6.481 15 C -0.069 4.069 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.079 4.079 19 C 0.084 3.916 20 C 0.172 3.828 21 H 0.076 0.924 22 N -0.721 5.721 23 C -0.239 4.239 24 H 0.083 0.917 25 C -0.068 4.068 26 N -0.968 5.968 27 Si 0.966 3.034 28 H -0.288 1.288 29 H -0.302 1.302 30 H -0.266 1.266 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.414 0.586 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.374 0.626 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -11.338 -6.571 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.088 0.912 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.369 3.631 7 O -0.442 6.442 8 C -0.218 4.218 9 C -0.058 4.058 10 C -0.139 4.139 11 C 0.032 3.968 12 N -0.246 5.246 13 C 0.163 3.837 14 O -0.290 6.290 15 C -0.107 4.107 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.116 4.116 19 C -0.042 4.042 20 C 0.062 3.938 21 H 0.094 0.906 22 N -0.359 5.359 23 C -0.370 4.370 24 H 0.101 0.899 25 C -0.261 4.261 26 N -0.618 5.618 27 Si 0.795 3.205 28 H -0.215 1.215 29 H -0.229 1.229 30 H -0.191 1.191 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.175 0.825 37 H 0.275 0.725 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.207 0.793 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.055 -11.581 -7.836 17.223 hybrid contribution -0.774 0.857 1.247 1.699 sum 9.281 -10.724 -6.589 15.638 Atomic orbital electron populations 1.21558 0.92093 1.02789 1.02026 1.22578 0.97644 0.98706 0.93411 0.91157 1.22411 0.81956 0.98783 0.97388 1.48431 1.12384 1.65183 1.07675 1.17687 0.83278 0.76971 0.85211 1.90775 1.83893 1.54205 1.15334 1.20890 0.93779 1.06619 1.00468 1.22075 0.99274 0.93240 0.91198 1.20773 0.91887 1.00880 1.00342 1.21652 0.97640 0.89070 0.88441 1.67118 1.26746 1.17997 1.12775 1.19002 0.86679 0.92123 0.85876 1.84714 1.94767 1.21865 1.27686 1.20587 0.88836 1.03115 0.98155 1.21614 1.01610 0.97944 0.94336 1.21599 0.92557 0.97647 1.03711 1.20562 1.00006 0.97224 0.93819 1.23197 1.01895 1.01327 0.77732 1.21444 0.92152 0.93892 0.86352 0.90579 1.42485 1.86826 1.05591 1.01017 1.19626 1.40545 0.92606 0.84244 0.89882 1.25477 1.03497 0.95726 1.01357 1.69809 1.58686 1.03848 1.29502 0.85257 0.77580 0.77421 0.80223 1.21468 1.22925 1.19095 0.93290 0.91028 0.91266 0.90639 0.89639 0.82459 0.72516 0.89354 0.88235 0.91843 0.88309 0.88997 0.90938 0.89698 0.88976 0.93028 0.90622 0.79332 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.32 71.98 0.67 -2.52 16 2 C -0.10 -3.01 3.27 -9.33 -0.03 -3.04 16 3 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 4 C 0.12 3.22 6.37 86.93 0.55 3.77 16 5 N -0.60 -18.72 3.33 -815.10 -2.71 -21.43 16 6 C 0.58 19.83 7.21 86.69 0.62 20.46 16 7 O -0.56 -22.54 16.72 6.89 0.12 -22.42 16 8 C -0.21 -6.64 5.46 -19.96 -0.11 -6.75 16 9 C -0.03 -0.85 8.24 22.79 0.19 -0.67 16 10 C -0.14 -3.18 5.74 -19.85 -0.11 -3.29 16 11 C 0.17 4.12 6.63 42.36 0.28 4.40 16 12 N -0.53 -15.78 10.18 -296.24 -3.02 -18.80 16 13 C 0.34 11.06 7.75 85.19 0.66 11.72 16 14 O -0.48 -14.95 12.55 -76.26 -0.96 -15.90 16 15 C -0.07 -1.18 5.91 29.78 0.18 -1.00 16 16 C -0.12 -1.48 5.97 30.61 0.18 -1.30 16 17 C -0.12 -1.42 5.98 30.62 0.18 -1.24 16 18 C -0.08 -1.30 5.67 29.72 0.17 -1.13 16 19 C 0.08 2.68 5.37 86.73 0.47 3.14 16 20 C 0.17 5.88 3.06 46.18 0.14 6.02 16 21 H 0.08 2.52 8.00 -2.38 -0.02 2.50 16 22 N -0.72 -32.23 5.16 -317.33 -1.64 -33.87 16 23 C -0.24 -11.81 9.97 84.03 0.84 -10.98 16 24 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 26 N -0.97 -55.83 13.06 21.65 0.28 -55.54 16 27 Si 0.97 42.73 29.55 68.60 2.03 44.76 16 28 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.52 8.08 -2.39 -0.02 1.51 16 34 H 0.08 2.10 8.09 -2.38 -0.02 2.08 16 35 H 0.09 2.09 7.99 -2.39 -0.02 2.07 16 36 H 0.16 3.67 5.84 -2.92 -0.02 3.66 16 37 H 0.41 9.19 9.06 -74.06 -0.67 8.52 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 46 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 47 H 0.08 2.16 5.95 -2.39 -0.01 2.15 16 48 H 0.37 18.56 7.74 -92.70 -0.72 17.84 16 49 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -69.53 393.51 -0.95 -70.48 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.40 Total: 38.26 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.35 Total: 14.47 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.08 Total: -129.64 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.84 Total: -38.33 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.53 -0.95 -70.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939376604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.762 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds