Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.88538 * 2 1 4 4 C 1.54916 * 111.00125 * 236.12019 * 2 1 3 5 5 N 1.47468 * 104.80665 * 204.95187 * 4 2 1 6 6 C 1.34779 * 125.62381 * 204.14721 * 5 4 2 7 7 O 1.21523 * 120.00244 * 351.48061 * 6 5 4 8 8 C 1.48032 * 119.99670 * 171.48848 * 6 5 4 9 9 C 1.39549 * 120.00220 * 21.62265 * 8 6 5 10 10 C 1.37828 * 119.99901 * 179.74599 * 9 8 6 11 11 C 1.39552 * 119.99813 * 0.55322 * 10 9 8 12 12 C 1.48037 * 120.00089 * 179.72621 * 11 10 9 13 13 O 1.21528 * 119.99707 * 216.82698 * 12 11 10 14 14 N 1.34774 * 120.00164 * 36.81644 * 12 11 10 15 15 C 1.46497 * 120.00122 * 171.84440 * 14 12 11 16 16 C 1.46504 * 119.99959 * 351.84845 * 14 12 11 17 17 C 1.39559 * 120.00122 * 359.69439 * 11 10 9 18 18 C 1.37814 * 120.00100 * 0.02819 * 17 11 10 19 19 C 1.47021 * 108.72540 * 24.07021 * 5 4 2 20 20 C 1.54317 * 107.26910 * 358.97389 * 19 5 4 21 21 H 1.09007 * 110.71800 * 96.17428 * 20 19 5 22 22 N 1.46500 * 110.72134 * 219.44094 * 20 19 5 23 23 C 1.36943 * 120.00193 * 268.53052 * 22 20 19 24 24 H 1.07998 * 119.99644 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99848 * 179.97438 * 23 22 20 26 26 N 1.31611 * 120.00158 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99577 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47343 * 60.00189 * 27 25 23 29 29 H 1.48503 * 109.46820 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47055 * 299.99533 * 27 25 23 31 31 H 1.09002 * 109.46913 * 299.29965 * 1 2 3 32 32 H 1.08997 * 109.46869 * 59.29675 * 1 2 3 33 33 H 1.08998 * 109.46991 * 179.29831 * 1 2 3 34 34 H 1.09002 * 110.36771 * 323.75492 * 4 2 1 35 35 H 1.08995 * 110.36333 * 86.08245 * 4 2 1 36 36 H 1.07998 * 120.00407 * 0.02562 * 9 8 6 37 37 H 1.08003 * 119.99815 * 180.25010 * 10 9 8 38 38 H 1.09000 * 109.47268 * 90.00254 * 15 14 12 39 39 H 1.08998 * 109.47339 * 210.00181 * 15 14 12 40 40 H 1.09005 * 109.47132 * 330.00148 * 15 14 12 41 41 H 1.09002 * 109.47241 * 32.66481 * 16 14 12 42 42 H 1.08997 * 109.47198 * 152.66531 * 16 14 12 43 43 H 1.09000 * 109.46966 * 272.66591 * 16 14 12 44 44 H 1.07998 * 120.00234 * 179.97438 * 17 11 10 45 45 H 1.07999 * 120.00567 * 179.97438 * 18 17 11 46 46 H 1.09007 * 109.88144 * 239.55576 * 19 5 4 47 47 H 1.09002 * 110.00739 * 118.46894 * 19 5 4 48 48 H 0.97002 * 120.00042 * 88.52453 * 22 20 19 49 49 H 0.97000 * 120.00263 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2007 5 7 3.4271 -1.2434 -0.7729 6 6 4.4481 -1.5608 -1.5935 7 8 4.2605 -1.6484 -2.7910 8 6 5.7979 -1.8030 -1.0361 9 6 5.9460 -2.1499 0.3075 10 6 7.2024 -2.3804 0.8252 11 6 8.3272 -2.2557 0.0086 12 6 9.6771 -2.4974 0.5661 13 8 10.6167 -1.8204 0.1977 14 7 9.8640 -3.4680 1.4822 15 6 11.2207 -3.8281 1.9016 16 6 8.7103 -4.1631 2.0587 17 6 8.1794 -1.9037 -1.3338 18 6 6.9227 -1.6788 -1.8529 19 6 3.4674 -1.2740 0.6964 20 6 2.0862 -0.8075 1.2024 21 1 1.4468 -1.6627 1.4215 22 7 2.2287 0.0503 2.3814 23 6 2.2001 -0.4991 3.6355 24 1 2.0720 -1.5647 3.7553 25 6 2.3356 0.3138 4.7526 26 7 2.4921 1.6124 4.6064 27 14 2.2958 -0.4356 6.4632 28 1 3.4005 -1.4187 6.5987 29 1 2.4610 0.6367 7.4772 30 1 0.9950 -1.1204 6.6735 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3633 -1.0276 -0.0126 34 1 1.4518 -1.6699 -1.4031 35 1 2.1560 -0.1712 -2.0837 36 1 5.0759 -2.2421 0.9405 37 1 7.3167 -2.6529 1.8640 38 1 11.5108 -3.2175 2.7566 39 1 11.2470 -4.8812 2.1816 40 1 11.9137 -3.6535 1.0786 41 1 7.9174 -4.2308 1.3138 42 1 9.0067 -5.1660 2.3660 43 1 8.3485 -3.6097 2.9252 44 1 9.0499 -1.8068 -1.9656 45 1 6.8083 -1.4060 -2.8915 46 1 4.2427 -0.5994 1.0601 47 1 3.6662 -2.2881 1.0431 48 1 2.3434 1.0075 2.2738 49 1 2.5864 2.1804 5.3870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939558325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = 6.596283 kcal Electronic energy + Delta-G solvation = -30406.014247 eV Core-core repulsion = 26334.764981 eV Total energy + Delta-G solvation = -4071.249265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.82785 -40.02510 -38.26234 -37.41002 -35.92573 -34.21110 -32.94523 -31.70629 -31.23199 -30.66365 -28.31468 -27.75487 -27.12705 -26.17246 -24.45637 -23.55081 -22.71983 -21.61945 -20.14184 -19.96359 -19.76963 -17.51844 -17.27621 -17.22685 -16.70522 -16.19638 -15.95444 -15.77803 -14.85761 -14.76331 -14.68466 -14.53659 -14.00319 -13.80279 -13.62909 -13.45603 -13.29594 -13.09878 -13.04654 -12.84444 -12.75347 -12.64161 -12.58344 -12.31778 -12.16629 -11.84340 -11.62617 -11.28198 -11.14027 -10.99403 -10.69036 -10.62469 -10.35730 -10.21622 -10.04481 -9.92329 -9.77645 -9.19196 -9.09447 -9.05231 -8.96460 -8.44212 -7.18088 -5.92803 -3.24432 0.45014 1.21106 2.34886 2.66069 2.94067 3.08280 3.32926 3.38288 3.40076 3.72674 4.16882 4.41815 4.51269 4.60196 4.71739 4.82021 4.93583 4.97400 5.02886 5.04118 5.13528 5.19304 5.23811 5.28627 5.38496 5.45858 5.48341 5.53066 5.57475 5.61459 5.74530 5.81433 5.82605 5.91373 6.02574 6.04164 6.11546 6.14078 6.17519 6.19134 6.26628 6.38849 6.44836 6.55342 6.64471 6.76584 6.97751 7.53755 7.64206 7.84444 8.20161 8.24366 9.36192 9.89325 10.24119 11.28730 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008069 B = 0.003588 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.434208 B = 7801.499320 C =10680.940722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.568 3.432 7 O -0.546 6.546 8 C -0.102 4.102 9 C -0.115 4.115 10 C -0.104 4.104 11 C -0.115 4.115 12 C 0.560 3.440 13 O -0.532 6.532 14 N -0.618 5.618 15 C 0.087 3.913 16 C 0.063 3.937 17 C -0.076 4.076 18 C -0.071 4.071 19 C 0.062 3.938 20 C 0.176 3.824 21 H 0.071 0.929 22 N -0.709 5.709 23 C -0.254 4.254 24 H 0.072 0.928 25 C -0.004 4.004 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.388 0.612 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -11.412 -7.838 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.338 5.338 6 C 0.357 3.643 7 O -0.425 6.425 8 C -0.105 4.105 9 C -0.132 4.132 10 C -0.123 4.123 11 C -0.118 4.118 12 C 0.349 3.651 13 O -0.409 6.409 14 N -0.351 5.351 15 C -0.055 4.055 16 C -0.079 4.079 17 C -0.095 4.095 18 C -0.090 4.090 19 C -0.064 4.064 20 C 0.063 3.937 21 H 0.089 0.911 22 N -0.349 5.349 23 C -0.384 4.384 24 H 0.090 0.910 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.182 0.818 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.222 0.778 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.712 -11.197 -8.489 16.533 hybrid contribution 0.165 -0.085 1.187 1.202 sum 8.877 -11.282 -7.301 16.106 Atomic orbital electron populations 1.21599 0.93721 1.01715 1.02002 1.22674 0.96466 0.99858 0.94536 0.89767 1.22314 0.82400 0.98197 0.97863 1.48403 1.11966 1.65444 1.07978 1.18008 0.83600 0.77151 0.85511 1.90743 1.84188 1.52691 1.14899 1.20099 0.93490 1.02390 0.94546 1.22556 0.99450 0.96391 0.94817 1.21768 0.91459 0.98414 1.00625 1.19994 0.92775 1.03653 0.95367 1.18474 0.88475 0.79663 0.78520 1.90777 1.43090 1.46402 1.60617 1.47614 1.07984 1.37538 1.41977 1.21681 0.82614 1.00276 1.00966 1.22403 0.89043 0.97242 0.99243 1.21075 0.97601 0.97001 0.93813 1.21171 0.90639 0.96937 1.00212 1.23818 1.03927 1.00797 0.77816 1.21297 0.91380 0.93992 0.87018 0.91108 1.42359 1.86222 1.06255 1.00060 1.19187 1.43506 0.92575 0.83160 0.90976 1.24759 1.02047 0.95397 0.97955 1.69640 1.55442 1.02872 1.29404 0.86291 0.77904 0.77871 0.84198 1.21155 1.21646 1.21112 0.91297 0.93160 0.92794 0.91370 0.90853 0.81848 0.83821 0.92461 0.90989 0.90617 0.89519 0.90776 0.91563 0.84625 0.84267 0.90038 0.91335 0.77793 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.29 37.16 0.35 -1.40 16 2 C -0.12 -1.69 3.27 -88.47 -0.29 -1.98 16 3 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 4 C 0.11 1.61 6.36 -2.50 -0.02 1.60 16 5 N -0.61 -9.22 3.33 -171.53 -0.57 -9.79 16 6 C 0.57 9.15 7.70 -12.24 -0.09 9.06 16 7 O -0.55 -10.09 16.87 5.35 0.09 -10.00 16 8 C -0.10 -1.45 5.83 -104.90 -0.61 -2.06 16 9 C -0.11 -1.47 8.43 -39.24 -0.33 -1.80 16 10 C -0.10 -1.21 7.45 -39.24 -0.29 -1.51 16 11 C -0.11 -1.44 5.39 -104.90 -0.57 -2.00 16 12 C 0.56 7.34 7.37 -12.24 -0.09 7.25 16 13 O -0.53 -8.65 16.53 5.34 0.09 -8.56 16 14 N -0.62 -6.20 3.27 -190.57 -0.62 -6.82 16 15 C 0.09 0.69 10.42 59.85 0.62 1.32 16 16 C 0.06 0.46 8.88 59.85 0.53 0.99 16 17 C -0.08 -0.95 9.60 -39.24 -0.38 -1.32 16 18 C -0.07 -0.93 9.57 -39.24 -0.38 -1.30 16 19 C 0.06 0.95 4.74 -3.07 -0.01 0.94 16 20 C 0.18 2.99 3.08 -66.10 -0.20 2.78 16 21 H 0.07 1.20 7.99 -51.92 -0.41 0.79 16 22 N -0.71 -15.53 5.15 -51.65 -0.27 -15.80 16 23 C -0.25 -6.24 9.96 -15.05 -0.15 -6.39 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 26 N -0.93 -25.99 13.06 55.49 0.72 -25.27 16 27 Si 0.91 20.64 29.55 -169.99 -5.02 15.62 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.16 2.07 3.43 -52.49 -0.18 1.89 16 37 H 0.14 1.38 5.00 -52.48 -0.26 1.12 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 40 H 0.08 0.67 7.55 -51.93 -0.39 0.28 16 41 H 0.09 0.64 5.28 -51.93 -0.27 0.37 16 42 H 0.07 0.37 7.86 -51.93 -0.41 -0.03 16 43 H 0.07 0.45 7.17 -51.93 -0.37 0.08 16 44 H 0.14 1.53 8.02 -52.49 -0.42 1.11 16 45 H 0.14 1.72 7.80 -52.49 -0.41 1.31 16 46 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 47 H 0.07 0.96 6.26 -51.93 -0.32 0.63 16 48 H 0.39 9.27 7.76 -40.82 -0.32 8.95 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -31.82 393.83 -8.69 -40.51 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.04 Total: 10.22 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.01 Total: 3.96 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.74 Total: -57.68 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.82 -8.69 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939558325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.107 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds