Wall clock time and date at job start Wed Apr 1 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.88538 * 2 1 4 4 C 1.54916 * 111.00125 * 236.12019 * 2 1 3 5 5 N 1.47468 * 104.80665 * 204.95187 * 4 2 1 6 6 C 1.34779 * 125.62381 * 204.14721 * 5 4 2 7 7 O 1.21523 * 120.00244 * 351.48061 * 6 5 4 8 8 C 1.48032 * 119.99670 * 171.48848 * 6 5 4 9 9 C 1.39549 * 120.00220 * 21.62265 * 8 6 5 10 10 C 1.37828 * 119.99901 * 179.74599 * 9 8 6 11 11 C 1.39552 * 119.99813 * 0.55322 * 10 9 8 12 12 C 1.48037 * 120.00089 * 179.72621 * 11 10 9 13 13 O 1.21528 * 119.99707 * 216.82698 * 12 11 10 14 14 N 1.34774 * 120.00164 * 36.81644 * 12 11 10 15 15 C 1.46497 * 120.00122 * 171.84440 * 14 12 11 16 16 C 1.46504 * 119.99959 * 351.84845 * 14 12 11 17 17 C 1.39559 * 120.00122 * 359.69439 * 11 10 9 18 18 C 1.37814 * 120.00100 * 0.02819 * 17 11 10 19 19 C 1.47021 * 108.72540 * 24.07021 * 5 4 2 20 20 C 1.54317 * 107.26910 * 358.97389 * 19 5 4 21 21 H 1.09007 * 110.71800 * 96.17428 * 20 19 5 22 22 N 1.46500 * 110.72134 * 219.44094 * 20 19 5 23 23 C 1.36943 * 120.00193 * 268.53052 * 22 20 19 24 24 H 1.07998 * 119.99644 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99848 * 179.97438 * 23 22 20 26 26 N 1.31611 * 120.00158 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99577 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47343 * 60.00189 * 27 25 23 29 29 H 1.48503 * 109.46820 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47055 * 299.99533 * 27 25 23 31 31 H 1.09002 * 109.46913 * 299.29965 * 1 2 3 32 32 H 1.08997 * 109.46869 * 59.29675 * 1 2 3 33 33 H 1.08998 * 109.46991 * 179.29831 * 1 2 3 34 34 H 1.09002 * 110.36771 * 323.75492 * 4 2 1 35 35 H 1.08995 * 110.36333 * 86.08245 * 4 2 1 36 36 H 1.07998 * 120.00407 * 0.02562 * 9 8 6 37 37 H 1.08003 * 119.99815 * 180.25010 * 10 9 8 38 38 H 1.09000 * 109.47268 * 90.00254 * 15 14 12 39 39 H 1.08998 * 109.47339 * 210.00181 * 15 14 12 40 40 H 1.09005 * 109.47132 * 330.00148 * 15 14 12 41 41 H 1.09002 * 109.47241 * 32.66481 * 16 14 12 42 42 H 1.08997 * 109.47198 * 152.66531 * 16 14 12 43 43 H 1.09000 * 109.46966 * 272.66591 * 16 14 12 44 44 H 1.07998 * 120.00234 * 179.97438 * 17 11 10 45 45 H 1.07999 * 120.00567 * 179.97438 * 18 17 11 46 46 H 1.09007 * 109.88144 * 239.55576 * 19 5 4 47 47 H 1.09002 * 110.00739 * 118.46894 * 19 5 4 48 48 H 0.97002 * 120.00042 * 88.52453 * 22 20 19 49 49 H 0.97000 * 120.00263 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2007 5 7 3.4271 -1.2434 -0.7729 6 6 4.4481 -1.5608 -1.5935 7 8 4.2605 -1.6484 -2.7910 8 6 5.7979 -1.8030 -1.0361 9 6 5.9460 -2.1499 0.3075 10 6 7.2024 -2.3804 0.8252 11 6 8.3272 -2.2557 0.0086 12 6 9.6771 -2.4974 0.5661 13 8 10.6167 -1.8204 0.1977 14 7 9.8640 -3.4680 1.4822 15 6 11.2207 -3.8281 1.9016 16 6 8.7103 -4.1631 2.0587 17 6 8.1794 -1.9037 -1.3338 18 6 6.9227 -1.6788 -1.8529 19 6 3.4674 -1.2740 0.6964 20 6 2.0862 -0.8075 1.2024 21 1 1.4468 -1.6627 1.4215 22 7 2.2287 0.0503 2.3814 23 6 2.2001 -0.4991 3.6355 24 1 2.0720 -1.5647 3.7553 25 6 2.3356 0.3138 4.7526 26 7 2.4921 1.6124 4.6064 27 14 2.2958 -0.4356 6.4632 28 1 3.4005 -1.4187 6.5987 29 1 2.4610 0.6367 7.4772 30 1 0.9950 -1.1204 6.6735 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3633 -1.0276 -0.0126 34 1 1.4518 -1.6699 -1.4031 35 1 2.1560 -0.1712 -2.0837 36 1 5.0759 -2.2421 0.9405 37 1 7.3167 -2.6529 1.8640 38 1 11.5108 -3.2175 2.7566 39 1 11.2470 -4.8812 2.1816 40 1 11.9137 -3.6535 1.0786 41 1 7.9174 -4.2308 1.3138 42 1 9.0067 -5.1660 2.3660 43 1 8.3485 -3.6097 2.9252 44 1 9.0499 -1.8068 -1.9656 45 1 6.8083 -1.4060 -2.8915 46 1 4.2427 -0.5994 1.0601 47 1 3.6662 -2.2881 1.0431 48 1 2.3434 1.0075 2.2738 49 1 2.5864 2.1804 5.3870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939558325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:03 Heat of formation + Delta-G solvation = -13.072360 kcal Electronic energy + Delta-G solvation = -30406.867143 eV Core-core repulsion = 26334.764981 eV Total energy + Delta-G solvation = -4072.102162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.88999 -41.13716 -39.39699 -38.65976 -36.79985 -35.86612 -34.24942 -32.83099 -32.53929 -31.95995 -29.30561 -28.93204 -28.08696 -27.14924 -26.01691 -24.77260 -23.74432 -22.91434 -21.38828 -21.02932 -20.87765 -19.05950 -18.46987 -18.37613 -17.73033 -17.26489 -17.16683 -16.80046 -16.41112 -15.80758 -15.71364 -15.65468 -15.33288 -15.20739 -14.81025 -14.67324 -14.39355 -14.18108 -14.11552 -13.90810 -13.83484 -13.58346 -13.45474 -13.32422 -13.16294 -12.98044 -12.84959 -12.76278 -12.68291 -12.25063 -12.17298 -12.00334 -11.85980 -11.61870 -11.44425 -11.26586 -11.09074 -10.80162 -10.19153 -10.10645 -9.78163 -9.67802 -9.00655 -7.89176 -5.18932 -0.59676 0.22522 1.28649 1.54633 1.55916 1.61870 1.74499 1.87890 1.94934 2.60798 2.67683 3.21609 3.37126 3.42918 3.61630 3.75575 3.80207 3.85505 3.90196 4.13713 4.19251 4.23406 4.28318 4.34598 4.41041 4.45985 4.46660 4.56697 4.61469 4.66900 4.68884 4.81300 4.86521 4.87579 4.89056 4.92743 5.04516 5.09023 5.12841 5.14516 5.16087 5.28145 5.35987 5.39285 5.51063 5.60838 5.64380 6.14170 6.30011 6.38852 6.91237 6.95682 7.38909 8.10320 8.33991 9.33484 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008069 B = 0.003588 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.434208 B = 7801.499320 C =10680.940722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 H 0.069 0.931 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.567 3.433 7 O -0.574 6.574 8 C -0.118 4.118 9 C -0.114 4.114 10 C -0.095 4.095 11 C -0.118 4.118 12 C 0.553 3.447 13 O -0.574 6.574 14 N -0.612 5.612 15 C 0.082 3.918 16 C 0.055 3.945 17 C -0.077 4.077 18 C -0.073 4.073 19 C 0.074 3.926 20 C 0.170 3.830 21 H 0.079 0.921 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.086 0.914 25 C -0.068 4.068 26 N -0.968 5.968 27 Si 0.965 3.035 28 H -0.273 1.273 29 H -0.305 1.305 30 H -0.279 1.279 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.374 0.626 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -13.895 -7.365 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 H 0.087 0.913 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.357 3.643 7 O -0.455 6.455 8 C -0.121 4.121 9 C -0.131 4.131 10 C -0.113 4.113 11 C -0.121 4.121 12 C 0.342 3.658 13 O -0.455 6.455 14 N -0.344 5.344 15 C -0.060 4.060 16 C -0.087 4.087 17 C -0.096 4.096 18 C -0.092 4.092 19 C -0.051 4.051 20 C 0.060 3.940 21 H 0.097 0.903 22 N -0.358 5.358 23 C -0.371 4.371 24 H 0.104 0.896 25 C -0.260 4.260 26 N -0.618 5.618 27 Si 0.795 3.205 28 H -0.199 1.199 29 H -0.232 1.232 30 H -0.205 1.205 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.206 0.794 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.563 -13.764 -8.018 18.085 hybrid contribution 0.218 0.610 0.982 1.176 sum 8.781 -13.154 -7.037 17.311 Atomic orbital electron populations 1.21555 0.92295 1.02701 1.01919 1.22574 0.97572 0.98793 0.93714 0.91266 1.22378 0.82058 0.98748 0.97345 1.48420 1.12366 1.65097 1.07755 1.18269 0.84220 0.76603 0.85173 1.90723 1.84673 1.54155 1.15993 1.20083 0.92779 1.03864 0.95379 1.22550 1.00012 0.96366 0.94190 1.21970 0.90540 0.97318 1.01500 1.20110 0.93037 1.03453 0.95497 1.18609 0.88061 0.80083 0.79078 1.90754 1.44133 1.48237 1.62368 1.47783 1.09680 1.36293 1.40618 1.21863 0.81332 1.02385 1.00432 1.22632 0.88140 0.98637 0.99258 1.21184 0.97574 0.96674 0.94180 1.21213 0.90628 0.97008 1.00348 1.23541 1.02101 1.01521 0.77937 1.21495 0.92410 0.93887 0.86252 0.90310 1.42483 1.86397 1.06132 1.00837 1.19619 1.40304 0.93066 0.84064 0.89634 1.25464 1.03517 0.95739 1.01301 1.69801 1.58327 1.04200 1.29486 0.85342 0.78264 0.76795 0.80124 1.19912 1.23229 1.20534 0.93424 0.91143 0.91314 0.89576 0.90744 0.81597 0.81570 0.92230 0.87606 0.91993 0.89653 0.87894 0.90645 0.83900 0.84039 0.91628 0.89230 0.79351 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.29 71.98 0.67 -2.45 16 2 C -0.11 -3.00 3.27 -9.40 -0.03 -3.03 16 3 H 0.07 2.18 8.01 -2.39 -0.02 2.16 16 4 C 0.12 3.07 6.36 86.85 0.55 3.63 16 5 N -0.60 -17.58 3.33 -814.87 -2.71 -20.29 16 6 C 0.57 17.78 7.70 86.84 0.67 18.45 16 7 O -0.57 -20.90 16.87 -3.79 -0.06 -20.97 16 8 C -0.12 -3.25 5.83 -20.04 -0.12 -3.37 16 9 C -0.11 -2.74 8.43 22.49 0.19 -2.55 16 10 C -0.10 -2.04 7.45 22.49 0.17 -1.87 16 11 C -0.12 -2.82 5.39 -20.04 -0.11 -2.93 16 12 C 0.55 14.02 7.37 86.84 0.64 14.66 16 13 O -0.57 -18.77 16.53 -3.80 -0.06 -18.84 16 14 N -0.61 -11.04 3.27 -875.14 -2.87 -13.91 16 15 C 0.08 1.14 10.42 127.77 1.33 2.47 16 16 C 0.05 0.61 8.88 127.77 1.13 1.75 16 17 C -0.08 -1.89 9.60 22.49 0.22 -1.67 16 18 C -0.07 -1.88 9.57 22.49 0.22 -1.67 16 19 C 0.07 2.17 4.74 86.73 0.41 2.58 16 20 C 0.17 5.54 3.08 46.18 0.14 5.68 16 21 H 0.08 2.48 7.99 -2.38 -0.02 2.46 16 22 N -0.72 -31.21 5.15 -317.34 -1.63 -32.84 16 23 C -0.24 -11.51 9.96 84.03 0.84 -10.67 16 24 H 0.09 3.82 7.83 -2.91 -0.02 3.80 16 25 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 26 N -0.97 -55.26 13.06 21.65 0.28 -54.98 16 27 Si 0.97 42.09 29.55 68.60 2.03 44.11 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.31 -13.94 7.11 99.48 0.71 -13.24 16 30 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 35 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 36 H 0.17 3.86 3.43 -2.91 -0.01 3.85 16 37 H 0.17 2.74 5.00 -2.91 -0.01 2.73 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.75 7.87 -2.39 -0.02 0.73 16 40 H 0.06 1.06 7.55 -2.38 -0.02 1.04 16 41 H 0.09 1.01 5.28 -2.39 -0.01 1.00 16 42 H 0.10 0.60 7.86 -2.39 -0.02 0.58 16 43 H 0.08 0.76 7.17 -2.39 -0.02 0.74 16 44 H 0.14 3.21 8.02 -2.91 -0.02 3.19 16 45 H 0.14 3.51 7.80 -2.91 -0.02 3.49 16 46 H 0.07 2.18 7.08 -2.38 -0.02 2.16 16 47 H 0.09 2.27 6.26 -2.39 -0.01 2.26 16 48 H 0.37 18.17 7.76 -92.71 -0.72 17.45 16 49 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -69.29 393.83 2.62 -66.67 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.27 Total: 35.09 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 7.38 Total: 15.94 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.93 Total: -122.02 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.13 Total: -39.80 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.29 2.62 -66.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939558325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.594 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds