Wall clock time and date at job start Wed Apr 1 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21287 * 119.99897 * 2 1 4 4 N 1.34771 * 119.99676 * 179.97438 * 2 1 3 5 5 C 1.39932 * 119.99755 * 184.35799 * 4 2 1 6 6 C 1.38893 * 120.07304 * 324.68069 * 5 4 2 7 7 C 1.38087 * 119.92702 * 179.69648 * 6 5 4 8 8 C 1.38303 * 120.07298 * 0.57261 * 7 6 5 9 9 C 1.38260 * 120.14019 * 359.72349 * 8 7 6 10 10 C 1.50696 * 119.96865 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47117 * 269.98228 * 10 9 8 12 12 O 1.21281 * 120.00140 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00144 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64830 * 179.97438 * 13 11 10 15 15 C 1.54914 * 104.83356 * 204.09472 * 14 13 11 16 16 H 1.09002 * 111.00519 * 81.06456 * 15 14 13 17 17 C 1.52996 * 111.00875 * 204.88047 * 15 14 13 18 18 C 1.55159 * 101.57973 * 322.99237 * 15 14 13 19 19 H 1.08991 * 110.72035 * 276.95761 * 18 15 14 20 20 N 1.46504 * 110.71904 * 153.86396 * 18 15 14 21 21 C 1.36936 * 119.99946 * 155.00243 * 20 18 15 22 22 H 1.07998 * 119.99947 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00051 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00205 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00108 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46929 * 90.00263 * 25 23 21 27 27 H 1.48497 * 109.47370 * 210.00727 * 25 23 21 28 28 H 1.48504 * 109.46968 * 330.00658 * 25 23 21 29 29 C 1.47025 * 125.64931 * 359.69337 * 13 11 10 30 30 C 1.38136 * 120.06901 * 359.97438 * 9 8 7 31 31 H 1.09000 * 109.47155 * 270.00053 * 1 2 3 32 32 H 1.08997 * 109.46968 * 29.99924 * 1 2 3 33 33 H 1.08998 * 109.47375 * 149.99767 * 1 2 3 34 34 H 0.97001 * 120.00633 * 4.63963 * 4 2 1 35 35 H 1.07999 * 120.03413 * 359.97438 * 6 5 4 36 36 H 1.07996 * 119.96326 * 180.30106 * 7 6 5 37 37 H 1.07996 * 119.92956 * 179.74552 * 8 7 6 38 38 H 1.09005 * 109.46808 * 29.97578 * 10 9 8 39 39 H 1.08992 * 109.47587 * 149.98065 * 10 9 8 40 40 H 1.08997 * 110.37162 * 322.93162 * 14 13 11 41 41 H 1.08996 * 110.36987 * 85.14897 * 14 13 11 42 42 H 1.08998 * 109.46983 * 58.54488 * 17 15 14 43 43 H 1.08997 * 109.47239 * 178.54447 * 17 15 14 44 44 H 1.08999 * 109.47204 * 298.54737 * 17 15 14 45 45 H 0.97001 * 120.00167 * 334.99933 * 20 18 15 46 46 H 0.97002 * 120.00231 * 179.97438 * 24 23 21 47 47 H 1.08999 * 109.88042 * 298.39474 * 29 13 11 48 48 H 1.09006 * 109.88357 * 59.55629 * 29 13 11 49 49 H 1.08001 * 120.03325 * 180.02562 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5771 -1.1689 0.0926 6 6 4.3161 -0.1636 -0.5177 7 6 5.6935 -0.1648 -0.4196 8 6 6.3380 -1.1720 0.2754 9 6 5.6056 -2.1776 0.8788 10 6 6.3118 -3.2735 1.6346 11 6 6.6244 -4.4102 0.6958 12 8 6.3048 -4.3377 -0.4719 13 7 7.2593 -5.5073 1.1538 14 6 7.6247 -6.6872 0.3491 15 6 7.7334 -7.8462 1.3713 16 1 6.7494 -8.2488 1.6116 17 6 8.6622 -8.9471 0.8556 18 6 8.3529 -7.1236 2.5967 19 1 9.4359 -7.0528 2.4957 20 7 7.9940 -7.8108 3.8397 21 6 8.7949 -7.6913 4.9440 22 1 9.6914 -7.0908 4.8984 23 6 8.4552 -8.3429 6.1216 24 7 9.2252 -8.2285 7.1829 25 14 6.9049 -9.3822 6.2003 26 1 7.2254 -10.7792 5.8116 27 1 6.3667 -9.3645 7.5842 28 1 5.8904 -8.8292 5.2674 29 6 7.7072 -5.7231 2.5374 30 6 4.2271 -2.1787 0.7897 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 1.6983 -2.0059 -0.0670 35 1 3.8138 0.6205 -1.0645 36 1 6.2684 0.6192 -0.8898 37 1 7.4155 -1.1729 0.3471 38 1 7.2389 -2.8849 2.0561 39 1 5.6695 -3.6325 2.4386 40 1 6.8482 -6.9009 -0.3853 41 1 8.5815 -6.5263 -0.1475 42 1 9.6502 -8.5286 0.6637 43 1 8.7409 -9.7361 1.6035 44 1 8.2573 -9.3610 -0.0680 45 1 7.1890 -8.3505 3.8806 46 1 8.9876 -8.6835 8.0059 47 1 8.4388 -4.9636 2.8129 48 1 6.8537 -5.6814 3.2142 49 1 3.6555 -2.9642 1.2616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939578151.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:46 Heat of formation + Delta-G solvation = -29.659294 kcal Electronic energy + Delta-G solvation = -29487.708935 eV Core-core repulsion = 25414.887510 eV Total energy + Delta-G solvation = -4072.821425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.79909 -40.00718 -38.74114 -37.55171 -35.14474 -34.23929 -32.97147 -32.33014 -31.11920 -31.09876 -29.11101 -28.08577 -27.86116 -25.81442 -23.84224 -22.79228 -22.55435 -21.44716 -20.44830 -20.23200 -19.05683 -17.82167 -17.64303 -17.06893 -16.87198 -16.37537 -16.14523 -15.89490 -15.27165 -15.01022 -14.59199 -14.46113 -14.27434 -13.81812 -13.53293 -13.40222 -13.25700 -13.21550 -13.06592 -12.96821 -12.72348 -12.60897 -12.45695 -12.22791 -11.98791 -11.81562 -11.71400 -11.50470 -11.34155 -11.17797 -10.85778 -10.69265 -10.55951 -10.43234 -10.12152 -10.09222 -9.80524 -9.69482 -9.09280 -8.84496 -8.43318 -8.28672 -7.46423 -5.90150 -3.28394 1.15497 1.28191 2.24293 2.74240 2.76450 3.13625 3.27515 3.30572 3.37140 3.73022 4.32941 4.46620 4.56564 4.60562 4.71455 4.76415 4.91569 4.96784 4.99296 5.02857 5.04222 5.17280 5.22507 5.33426 5.39765 5.42688 5.47096 5.49696 5.54907 5.64717 5.65326 5.73867 5.80344 5.87807 6.03270 6.07404 6.13578 6.20235 6.24510 6.30733 6.39730 6.42373 6.46216 6.51298 6.68981 6.90740 7.05553 7.69038 7.75257 7.84018 8.28293 8.29347 9.04687 9.76933 9.94933 11.27385 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002235 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.852924 B =12523.575158 C =13391.342391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.529 6.529 4 N -0.673 5.673 5 C 0.137 3.863 6 C -0.121 4.121 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.042 4.042 10 C -0.100 4.100 11 C 0.529 3.471 12 O -0.545 6.545 13 N -0.615 5.615 14 C 0.115 3.885 15 C -0.118 4.118 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.182 3.818 19 H 0.078 0.922 20 N -0.735 5.735 21 C -0.253 4.253 22 H 0.093 0.907 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.071 3.929 30 C -0.128 4.128 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.411 0.589 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.364 0.636 46 H 0.261 0.739 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 11.381 -15.873 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.044 3.956 6 C -0.141 4.141 7 C -0.121 4.121 8 C -0.135 4.135 9 C -0.043 4.043 10 C -0.139 4.139 11 C 0.318 3.682 12 O -0.423 6.423 13 N -0.349 5.349 14 C -0.008 4.008 15 C -0.138 4.138 16 H 0.098 0.902 17 C -0.192 4.192 18 C 0.070 3.930 19 H 0.096 0.904 20 N -0.376 5.376 21 C -0.383 4.383 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.575 5.575 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.055 4.055 30 C -0.148 4.148 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.197 0.803 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.719 12.303 -16.290 24.052 hybrid contribution -1.357 -1.250 0.406 1.889 sum -14.076 11.053 -15.884 23.930 Atomic orbital electron populations 1.21891 0.90740 1.05228 1.05205 1.21009 0.90883 0.83166 0.75175 1.90734 1.70456 1.31296 1.47943 1.43614 1.05354 1.09911 1.72989 1.17642 0.82276 0.97412 0.98270 1.21190 0.93823 0.99221 0.99868 1.20989 0.93947 0.98375 0.98795 1.20997 0.99830 0.94423 0.98202 1.19065 0.92646 0.94894 0.97723 1.20655 1.02638 0.92809 0.97833 1.20118 0.77307 0.82318 0.88488 1.90694 1.53469 1.80224 1.17902 1.48555 1.57310 1.17030 1.12025 1.22225 1.00324 0.84202 0.94060 1.22689 1.00392 0.94933 0.95795 0.90167 1.21611 0.98750 0.98237 1.00576 1.21223 0.97776 0.88426 0.85533 0.90422 1.42711 1.28227 1.57817 1.08878 1.19065 1.04557 1.26631 0.88033 0.88959 1.24680 0.98157 1.00017 0.95779 1.69692 1.38641 1.47091 1.02043 0.86589 0.84064 0.81042 0.77001 1.20946 1.21660 1.20319 1.23282 0.99754 1.01417 0.80998 1.20688 0.94277 0.99347 1.00481 0.88406 0.88517 0.89896 0.75297 0.84715 0.85704 0.85994 0.87657 0.87855 0.90996 0.91516 0.92442 0.91533 0.93093 0.80280 0.92869 0.91635 0.90925 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.31 36.01 0.37 -0.39 16 2 C 0.51 4.66 7.78 -10.99 -0.09 4.57 16 3 O -0.53 -7.06 14.56 5.55 0.08 -6.98 16 4 N -0.67 -5.85 5.34 -9.86 -0.05 -5.90 16 5 C 0.14 1.61 6.29 -83.69 -0.53 1.09 16 6 C -0.12 -1.51 8.69 -39.39 -0.34 -1.85 16 7 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 8 C -0.12 -1.39 9.70 -39.55 -0.38 -1.78 16 9 C -0.04 -0.53 4.37 -104.65 -0.46 -0.98 16 10 C -0.10 -1.19 5.02 -29.04 -0.15 -1.34 16 11 C 0.53 7.81 7.84 -10.99 -0.09 7.72 16 12 O -0.54 -9.64 16.29 5.56 0.09 -9.55 16 13 N -0.62 -8.88 3.33 -170.51 -0.57 -9.45 16 14 C 0.11 1.56 6.37 -2.53 -0.02 1.54 16 15 C -0.12 -1.65 3.27 -88.47 -0.29 -1.94 16 16 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 17 C -0.13 -1.69 9.30 37.16 0.35 -1.34 16 18 C 0.18 3.06 3.08 -66.09 -0.20 2.85 16 19 H 0.08 1.34 7.96 -51.93 -0.41 0.93 16 20 N -0.74 -15.46 4.96 -51.65 -0.26 -15.71 16 21 C -0.25 -6.51 10.44 -15.06 -0.16 -6.67 16 22 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 23 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 24 N -0.93 -27.62 13.97 55.49 0.78 -26.85 16 25 Si 0.88 20.73 27.74 -169.99 -4.71 16.01 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.07 6.52 56.52 0.37 -5.71 16 29 C 0.07 1.08 6.25 -3.06 -0.02 1.06 16 30 C -0.13 -1.51 9.62 -39.39 -0.38 -1.89 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.41 2.26 8.82 -40.82 -0.36 1.90 16 35 H 0.14 1.73 6.25 -52.49 -0.33 1.40 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 41 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.36 7.63 5.62 -40.82 -0.23 7.40 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 49 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -34.29 405.21 -9.06 -43.35 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.66 Total: 9.71 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.87 Total: -0.74 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.10 Total: -57.91 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.17 Total: -16.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.01 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.29 -9.06 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939578151.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.695 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds