Wall clock time and date at job start Wed Apr 1 2020 03:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 N 1.46504 * 109.47213 * 120.00894 * 2 1 3 5 5 C 1.34777 * 119.99430 * 274.99624 * 4 2 1 6 6 O 1.21283 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99758 * 180.02562 * 5 4 2 8 8 H 1.09002 * 110.43705 * 59.29710 * 7 5 4 9 9 C 1.54814 * 110.48654 * 296.74931 * 7 5 4 10 10 C 1.54992 * 102.09350 * 262.07395 * 9 7 5 11 11 O 1.44376 * 103.49230 * 322.97532 * 10 9 7 12 12 C 1.44053 * 106.98046 * 40.13797 * 11 10 9 13 13 H 1.09005 * 109.98549 * 92.77078 * 12 11 10 14 14 C 1.50699 * 109.93019 * 214.02336 * 12 11 10 15 15 C 1.38651 * 120.78655 * 37.38614 * 14 12 11 16 16 C 1.38203 * 119.15995 * 179.76005 * 15 14 12 17 17 N 1.31873 * 120.76353 * 0.52940 * 16 15 14 18 18 C 1.31873 * 121.72539 * 359.74052 * 17 16 15 19 19 C 1.38195 * 120.76429 * 359.97438 * 18 17 16 20 20 C 1.53004 * 109.46912 * 240.00164 * 2 1 3 21 21 C 1.53945 * 113.74205 * 156.67480 * 20 2 1 22 22 N 1.47585 * 86.11796 * 222.05094 * 21 20 2 23 23 C 1.36933 * 134.49113 * 204.64030 * 22 21 20 24 24 H 1.08003 * 119.99920 * 179.97438 * 23 22 21 25 25 C 1.38814 * 120.00065 * 0.02562 * 23 22 21 26 26 N 1.31616 * 120.00149 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99910 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47202 * 89.99788 * 27 25 23 29 29 H 1.48492 * 109.46985 * 209.99693 * 27 25 23 30 30 H 1.48493 * 109.47212 * 330.00097 * 27 25 23 31 31 C 1.47578 * 91.01486 * 24.63918 * 22 21 20 32 32 H 1.09008 * 109.47593 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47397 * 299.99203 * 1 2 3 34 34 H 1.09002 * 109.47509 * 59.99484 * 1 2 3 35 35 H 0.96995 * 120.00238 * 94.99545 * 4 2 1 36 36 H 1.09000 * 110.90206 * 20.27758 * 9 7 5 37 37 H 1.08998 * 110.90307 * 143.83864 * 9 7 5 38 38 H 1.09003 * 110.61593 * 81.48070 * 10 9 7 39 39 H 1.09001 * 110.61496 * 204.47541 * 10 9 7 40 40 H 1.07995 * 120.42242 * 0.02562 * 15 14 12 41 41 H 1.08000 * 119.62245 * 180.29585 * 16 15 14 42 42 H 1.08003 * 119.61650 * 179.97438 * 18 17 16 43 43 H 1.08006 * 120.42124 * 180.02562 * 19 18 17 44 44 H 1.08997 * 112.95045 * 288.41003 * 20 2 1 45 45 H 1.09005 * 113.77083 * 336.35225 * 21 20 2 46 46 H 1.08996 * 113.77107 * 107.74965 * 21 20 2 47 47 H 0.96994 * 120.00058 * 180.02562 * 26 25 23 48 48 H 1.09000 * 113.77096 * 221.05871 * 31 22 21 49 49 H 1.09002 * 113.77168 * 89.66137 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1470 -0.0185 2.3571 6 8 1.8582 1.1582 2.4118 7 6 2.6499 -0.7289 3.5873 8 1 3.6446 -1.1382 3.4106 9 6 1.6684 -1.8511 4.0043 10 6 0.8416 -1.1617 5.1194 11 8 1.8151 -0.3442 5.8039 12 6 2.6675 0.2293 4.7941 13 1 2.2874 1.2067 4.4969 14 6 4.0725 0.3619 5.3227 15 6 4.6133 -0.6087 6.1522 16 6 5.9070 -0.4556 6.6135 17 7 6.6206 0.6026 6.2819 18 6 6.1370 1.5478 5.4998 19 6 4.8532 1.4601 4.9957 20 6 2.0399 -0.7212 -1.2493 21 6 3.4665 -0.3146 -1.6609 22 7 2.9582 -0.3118 -3.0464 23 6 3.5326 -0.4675 -4.2796 24 1 2.9220 -0.4224 -5.1693 25 6 4.8995 -0.6844 -4.3862 26 7 5.6436 -0.7399 -3.3019 27 14 5.6830 -0.8976 -6.0685 28 1 6.1040 0.4276 -6.5901 29 1 6.8690 -1.7837 -5.9535 30 1 4.6990 -1.5059 -6.9994 31 6 1.5822 -0.0739 -2.5690 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 2.2489 -1.6319 1.1524 36 1 1.0304 -2.1399 3.1690 37 1 2.2075 -2.7137 4.3959 38 1 0.0559 -0.5420 4.6871 39 1 0.4182 -1.9029 5.7971 40 1 4.0324 -1.4755 6.4307 41 1 6.3373 -1.2095 7.2561 42 1 6.7513 2.4003 5.2502 43 1 4.4628 2.2372 4.3553 44 1 1.8827 -1.7992 -1.2117 45 1 3.7640 0.6701 -1.3001 46 1 4.2150 -1.0833 -1.4691 47 1 6.5988 -0.8911 -3.3764 48 1 0.8262 -0.6504 -3.1021 49 1 1.3260 0.9814 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969689712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:36 Heat of formation + Delta-G solvation = 8.714050 kcal Electronic energy + Delta-G solvation = -30410.256727 eV Core-core repulsion = 26339.099295 eV Total energy + Delta-G solvation = -4071.157432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12756 -39.96673 -38.90716 -37.90456 -34.93590 -33.51905 -32.88832 -32.07875 -31.36099 -30.27866 -28.92564 -27.56804 -25.22617 -24.55549 -23.93510 -23.67144 -22.73801 -21.99978 -21.04049 -20.22910 -19.09405 -17.80534 -17.34726 -16.80271 -16.50057 -16.32396 -15.86717 -15.59433 -15.52411 -14.94576 -14.89779 -14.62883 -14.12510 -13.96849 -13.88975 -13.75768 -13.52180 -13.38951 -13.12199 -12.63357 -12.32822 -12.22168 -12.05018 -11.83815 -11.73584 -11.65653 -11.41172 -11.35437 -11.34575 -10.95106 -10.75339 -10.42883 -10.24969 -10.05759 -9.88200 -9.81643 -9.64143 -9.56271 -9.43155 -9.31264 -8.92318 -8.82903 -6.91276 -5.79902 -3.12381 0.97502 0.99526 2.54444 3.06573 3.36809 3.40097 3.41653 3.43627 3.75782 4.04972 4.19796 4.30813 4.41956 4.47423 4.56750 4.66998 4.79496 4.90184 4.96994 5.00382 5.06855 5.11794 5.21175 5.22716 5.33496 5.37300 5.46486 5.48543 5.51700 5.55823 5.58647 5.67056 5.73103 5.79682 5.87055 5.95631 6.11597 6.16937 6.28954 6.33658 6.48798 6.51263 6.52071 6.59419 6.72533 7.18752 7.31129 7.51187 7.52771 7.79747 7.95083 8.18670 9.01650 9.67850 10.56581 11.37083 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002672 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.179628 B =10474.589376 C =12194.210741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.523 3.477 6 O -0.539 6.539 7 C -0.140 4.140 8 H 0.114 0.886 9 C -0.145 4.145 10 C 0.047 3.953 11 O -0.365 6.365 12 C 0.126 3.874 13 H 0.110 0.890 14 C -0.043 4.043 15 C -0.150 4.150 16 C 0.093 3.907 17 N -0.485 5.485 18 C 0.099 3.901 19 C -0.156 4.156 20 C -0.147 4.147 21 C 0.170 3.830 22 N -0.612 5.612 23 C -0.224 4.224 24 H 0.080 0.920 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 C 0.130 3.870 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.025 0.975 46 H 0.071 0.929 47 H 0.253 0.747 48 H 0.044 0.956 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 -2.902 20.110 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.362 5.362 5 C 0.308 3.692 6 O -0.416 6.416 7 C -0.161 4.161 8 H 0.132 0.868 9 C -0.183 4.183 10 C -0.030 4.030 11 O -0.284 6.284 12 C 0.068 3.932 13 H 0.127 0.873 14 C -0.052 4.052 15 C -0.170 4.170 16 C -0.064 4.064 17 N -0.195 5.195 18 C -0.058 4.058 19 C -0.176 4.176 20 C -0.167 4.167 21 C 0.045 3.955 22 N -0.338 5.338 23 C -0.352 4.352 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.206 1.206 31 C 0.003 3.997 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.157 0.843 44 H 0.106 0.894 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.478 -1.998 20.430 21.847 hybrid contribution -0.188 -0.616 -1.601 1.726 sum -7.667 -2.614 18.829 20.497 Atomic orbital electron populations 1.22129 0.95594 1.01738 1.02159 1.21138 0.93504 0.97620 0.83228 0.89396 1.46068 1.66468 1.14125 1.09526 1.20100 0.77571 0.87163 0.84395 1.90681 1.50435 1.15795 1.84723 1.22696 1.02412 0.96909 0.94132 0.86753 1.23191 0.97604 0.97518 0.99973 1.23593 0.91787 0.93484 0.94134 1.88958 1.44052 1.65514 1.29851 1.21656 0.87442 0.98501 0.85562 0.87291 1.20166 0.94838 0.94201 0.95953 1.21973 0.96604 1.00154 0.98225 1.22772 0.91025 0.95184 0.97382 1.67672 1.37392 1.02010 1.12377 1.22767 0.93138 0.97049 0.92842 1.22082 0.95769 0.98550 1.01230 1.23830 1.01001 0.99646 0.92193 1.22261 0.91655 0.98246 0.83327 1.45946 1.02441 1.83280 1.02148 1.19025 0.91113 1.42123 0.82899 0.90260 1.24784 0.95958 1.02349 0.97339 1.69809 1.05184 1.55590 1.26251 0.86127 0.78907 0.77603 0.83175 1.21590 1.21608 1.20615 1.22497 0.89750 0.96740 0.90676 0.92731 0.92825 0.91317 0.76562 0.89201 0.89130 0.91650 0.88323 0.84533 0.82752 0.82478 0.84278 0.89408 0.95713 0.91061 0.93648 0.93747 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.29 37.15 0.35 -1.58 16 2 C 0.15 2.13 2.42 -67.93 -0.16 1.97 16 3 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 4 N -0.71 -8.57 4.85 -53.81 -0.26 -8.83 16 5 C 0.52 6.59 7.05 -10.99 -0.08 6.51 16 6 O -0.54 -8.61 14.92 5.55 0.08 -8.53 16 7 C -0.14 -1.36 3.05 -90.24 -0.28 -1.64 16 8 H 0.11 1.08 7.69 -51.93 -0.40 0.68 16 9 C -0.14 -1.02 6.69 -24.72 -0.17 -1.18 16 10 C 0.05 0.36 7.72 38.21 0.29 0.66 16 11 O -0.36 -3.86 10.55 -35.23 -0.37 -4.23 16 12 C 0.13 1.37 3.30 -27.31 -0.09 1.28 16 13 H 0.11 1.39 6.36 -51.93 -0.33 1.06 16 14 C -0.04 -0.47 4.80 -104.32 -0.50 -0.97 16 15 C -0.15 -1.47 9.46 -39.44 -0.37 -1.84 16 16 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 17 N -0.49 -5.78 10.36 -13.25 -0.14 -5.92 16 18 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 19 C -0.16 -1.72 9.80 -39.44 -0.39 -2.11 16 20 C -0.15 -2.49 3.50 -89.69 -0.31 -2.80 16 21 C 0.17 3.87 7.07 -2.97 -0.02 3.85 16 22 N -0.61 -15.42 3.70 -177.89 -0.66 -16.08 16 23 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 24 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 25 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 26 N -0.92 -27.13 11.38 55.49 0.63 -26.50 16 27 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 31 C 0.13 2.52 7.56 -2.97 -0.02 2.50 16 32 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 35 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 36 H 0.09 0.56 7.68 -51.93 -0.40 0.16 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.14 1.11 7.80 -52.49 -0.41 0.70 16 41 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 46 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -34.15 400.32 -9.74 -43.89 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.64 Total: 3.61 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.45 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.42 Total: -57.33 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.29 Total: -12.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.15 -9.74 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969689712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.606 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds