Wall clock time and date at job start Wed Apr 1 2020 03:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 N 1.46504 * 109.47213 * 120.00894 * 2 1 3 5 5 C 1.34777 * 119.99430 * 274.99624 * 4 2 1 6 6 O 1.21283 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99758 * 180.02562 * 5 4 2 8 8 H 1.09002 * 110.43705 * 59.29710 * 7 5 4 9 9 C 1.54814 * 110.48654 * 296.74931 * 7 5 4 10 10 C 1.54992 * 102.09350 * 262.07395 * 9 7 5 11 11 O 1.44376 * 103.49230 * 322.97532 * 10 9 7 12 12 C 1.44053 * 106.98046 * 40.13797 * 11 10 9 13 13 H 1.09005 * 109.98549 * 92.77078 * 12 11 10 14 14 C 1.50699 * 109.93019 * 214.02336 * 12 11 10 15 15 C 1.38651 * 120.78655 * 37.38614 * 14 12 11 16 16 C 1.38203 * 119.15995 * 179.76005 * 15 14 12 17 17 N 1.31873 * 120.76353 * 0.52940 * 16 15 14 18 18 C 1.31873 * 121.72539 * 359.74052 * 17 16 15 19 19 C 1.38195 * 120.76429 * 359.97438 * 18 17 16 20 20 C 1.53004 * 109.46912 * 240.00164 * 2 1 3 21 21 C 1.53945 * 113.74205 * 156.67480 * 20 2 1 22 22 N 1.47585 * 86.11796 * 222.05094 * 21 20 2 23 23 C 1.36933 * 134.49113 * 204.64030 * 22 21 20 24 24 H 1.08003 * 119.99920 * 179.97438 * 23 22 21 25 25 C 1.38814 * 120.00065 * 0.02562 * 23 22 21 26 26 N 1.31616 * 120.00149 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99910 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47202 * 89.99788 * 27 25 23 29 29 H 1.48492 * 109.46985 * 209.99693 * 27 25 23 30 30 H 1.48493 * 109.47212 * 330.00097 * 27 25 23 31 31 C 1.47578 * 91.01486 * 24.63918 * 22 21 20 32 32 H 1.09008 * 109.47593 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47397 * 299.99203 * 1 2 3 34 34 H 1.09002 * 109.47509 * 59.99484 * 1 2 3 35 35 H 0.96995 * 120.00238 * 94.99545 * 4 2 1 36 36 H 1.09000 * 110.90206 * 20.27758 * 9 7 5 37 37 H 1.08998 * 110.90307 * 143.83864 * 9 7 5 38 38 H 1.09003 * 110.61593 * 81.48070 * 10 9 7 39 39 H 1.09001 * 110.61496 * 204.47541 * 10 9 7 40 40 H 1.07995 * 120.42242 * 0.02562 * 15 14 12 41 41 H 1.08000 * 119.62245 * 180.29585 * 16 15 14 42 42 H 1.08003 * 119.61650 * 179.97438 * 18 17 16 43 43 H 1.08006 * 120.42124 * 180.02562 * 19 18 17 44 44 H 1.08997 * 112.95045 * 288.41003 * 20 2 1 45 45 H 1.09005 * 113.77083 * 336.35225 * 21 20 2 46 46 H 1.08996 * 113.77107 * 107.74965 * 21 20 2 47 47 H 0.96994 * 120.00058 * 180.02562 * 26 25 23 48 48 H 1.09000 * 113.77096 * 221.05871 * 31 22 21 49 49 H 1.09002 * 113.77168 * 89.66137 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1470 -0.0185 2.3571 6 8 1.8582 1.1582 2.4118 7 6 2.6499 -0.7289 3.5873 8 1 3.6446 -1.1382 3.4106 9 6 1.6684 -1.8511 4.0043 10 6 0.8416 -1.1617 5.1194 11 8 1.8151 -0.3442 5.8039 12 6 2.6675 0.2293 4.7941 13 1 2.2874 1.2067 4.4969 14 6 4.0725 0.3619 5.3227 15 6 4.6133 -0.6087 6.1522 16 6 5.9070 -0.4556 6.6135 17 7 6.6206 0.6026 6.2819 18 6 6.1370 1.5478 5.4998 19 6 4.8532 1.4601 4.9957 20 6 2.0399 -0.7212 -1.2493 21 6 3.4665 -0.3146 -1.6609 22 7 2.9582 -0.3118 -3.0464 23 6 3.5326 -0.4675 -4.2796 24 1 2.9220 -0.4224 -5.1693 25 6 4.8995 -0.6844 -4.3862 26 7 5.6436 -0.7399 -3.3019 27 14 5.6830 -0.8976 -6.0685 28 1 6.1040 0.4276 -6.5901 29 1 6.8690 -1.7837 -5.9535 30 1 4.6990 -1.5059 -6.9994 31 6 1.5822 -0.0739 -2.5690 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 2.2489 -1.6319 1.1524 36 1 1.0304 -2.1399 3.1690 37 1 2.2075 -2.7137 4.3959 38 1 0.0559 -0.5420 4.6871 39 1 0.4182 -1.9029 5.7971 40 1 4.0324 -1.4755 6.4307 41 1 6.3373 -1.2095 7.2561 42 1 6.7513 2.4003 5.2502 43 1 4.4628 2.2372 4.3553 44 1 1.8827 -1.7992 -1.2117 45 1 3.7640 0.6701 -1.3001 46 1 4.2150 -1.0833 -1.4691 47 1 6.5988 -0.8911 -3.3764 48 1 0.8262 -0.6504 -3.1021 49 1 1.3260 0.9814 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969689712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:35 Heat of formation + Delta-G solvation = -14.194483 kcal Electronic energy + Delta-G solvation = -30411.250116 eV Core-core repulsion = 26339.099295 eV Total energy + Delta-G solvation = -4072.150820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98997 -40.91701 -40.09523 -39.15001 -36.23143 -34.33854 -34.26778 -33.47965 -32.14828 -31.44599 -29.69704 -29.33587 -26.70869 -25.83509 -25.31018 -24.49882 -23.57906 -23.00839 -22.22101 -21.33539 -20.47671 -18.80824 -18.66473 -18.17279 -17.47618 -17.32125 -16.92197 -16.65373 -16.55222 -16.33745 -15.77677 -15.68449 -15.53699 -15.22581 -14.88385 -14.76499 -14.57577 -14.49864 -14.19016 -13.95999 -13.49095 -13.28481 -13.15145 -13.05875 -12.92588 -12.85694 -12.70584 -12.59658 -12.54226 -12.24619 -12.12513 -12.00146 -11.75127 -11.50554 -11.26184 -11.03297 -10.90656 -10.85334 -10.46559 -10.42383 -10.10455 -10.06326 -8.93328 -7.92027 -5.25559 0.16274 0.18892 1.44275 1.46148 1.54720 1.55002 2.07188 2.46156 2.64570 2.96525 3.28896 3.32506 3.37091 3.41150 3.58058 3.62310 3.77145 3.88258 3.93298 3.97699 4.04276 4.19095 4.20739 4.28885 4.33584 4.38035 4.49798 4.59070 4.65846 4.72550 4.73953 4.81769 4.82242 4.84858 4.87189 4.89831 5.00157 5.00619 5.02640 5.10224 5.24637 5.33522 5.34037 5.47076 5.55311 5.65911 5.74015 5.76397 5.92891 6.53190 6.90787 6.99291 7.20219 7.59845 8.55328 9.24625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002672 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.179628 B =10474.589376 C =12194.210741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.057 0.943 4 N -0.705 5.705 5 C 0.521 3.479 6 O -0.577 6.577 7 C -0.133 4.133 8 H 0.121 0.879 9 C -0.135 4.135 10 C 0.040 3.960 11 O -0.377 6.377 12 C 0.131 3.869 13 H 0.083 0.917 14 C -0.054 4.054 15 C -0.146 4.146 16 C 0.089 3.911 17 N -0.509 5.509 18 C 0.089 3.911 19 C -0.171 4.171 20 C -0.107 4.107 21 C 0.166 3.834 22 N -0.645 5.645 23 C -0.235 4.235 24 H 0.085 0.915 25 C -0.068 4.068 26 N -0.954 5.954 27 Si 0.978 3.022 28 H -0.290 1.290 29 H -0.293 1.293 30 H -0.265 1.265 31 C 0.129 3.871 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.126 0.874 40 H 0.158 0.842 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.136 0.864 44 H 0.107 0.893 45 H 0.000 1.000 46 H 0.041 0.959 47 H 0.247 0.753 48 H 0.065 0.935 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -5.105 20.590 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 H 0.076 0.924 4 N -0.356 5.356 5 C 0.308 3.692 6 O -0.457 6.457 7 C -0.154 4.154 8 H 0.139 0.861 9 C -0.172 4.172 10 C -0.036 4.036 11 O -0.296 6.296 12 C 0.073 3.927 13 H 0.101 0.899 14 C -0.062 4.062 15 C -0.165 4.165 16 C -0.068 4.068 17 N -0.219 5.219 18 C -0.067 4.067 19 C -0.191 4.191 20 C -0.127 4.127 21 C 0.041 3.959 22 N -0.371 5.371 23 C -0.364 4.364 24 H 0.102 0.898 25 C -0.261 4.261 26 N -0.603 5.603 27 Si 0.806 3.194 28 H -0.217 1.217 29 H -0.220 1.220 30 H -0.190 1.190 31 C 0.004 3.996 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.176 0.824 41 H 0.200 0.800 42 H 0.190 0.810 43 H 0.154 0.846 44 H 0.125 0.875 45 H 0.018 0.982 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.120 -4.220 20.911 23.201 hybrid contribution 0.257 0.123 -1.719 1.743 sum -8.863 -4.096 19.192 21.533 Atomic orbital electron populations 1.22039 0.93123 1.03278 1.02226 1.20834 0.95176 0.95716 0.82881 0.92443 1.45939 1.66232 1.14679 1.08728 1.20590 0.76723 0.86734 0.85125 1.90673 1.52048 1.17595 1.85358 1.22654 1.03382 0.97338 0.92070 0.86133 1.23253 0.96962 0.96921 1.00103 1.23815 0.91186 0.93613 0.94956 1.88947 1.44520 1.65980 1.30154 1.21446 0.87429 0.97713 0.86161 0.89943 1.20311 0.94921 0.94593 0.96417 1.22178 0.96637 1.00338 0.97366 1.23282 0.91142 0.95137 0.97213 1.67711 1.38236 1.02860 1.13086 1.23034 0.93323 0.97574 0.92791 1.22169 0.96191 0.99004 1.01776 1.23435 0.96022 1.00642 0.92567 1.22155 0.94338 0.96197 0.83234 1.46395 1.05167 1.83469 1.02066 1.19454 0.91607 1.40897 0.84418 0.89762 1.25629 0.96647 1.02990 1.00838 1.70005 1.04883 1.57184 1.28219 0.85090 0.77878 0.77194 0.79262 1.21698 1.21983 1.18994 1.22697 0.87711 0.97642 0.91543 0.90383 0.93059 0.91022 0.74973 0.87917 0.86675 0.92548 0.85616 0.82426 0.80001 0.81044 0.84617 0.87465 0.98177 0.94008 0.94364 0.91637 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.29 71.98 0.67 -2.58 16 2 C 0.16 4.38 2.42 44.99 0.11 4.49 16 3 H 0.06 1.97 7.37 -2.39 -0.02 1.96 16 4 N -0.71 -16.05 4.85 -442.53 -2.14 -18.20 16 5 C 0.52 12.91 7.05 87.66 0.62 13.53 16 6 O -0.58 -18.91 14.92 -3.04 -0.05 -18.96 16 7 C -0.13 -2.42 3.05 -10.55 -0.03 -2.45 16 8 H 0.12 2.08 7.69 -2.39 -0.02 2.07 16 9 C -0.13 -1.47 6.69 31.89 0.21 -1.26 16 10 C 0.04 0.53 7.72 72.66 0.56 1.09 16 11 O -0.38 -7.44 10.55 -148.98 -1.57 -9.01 16 12 C 0.13 2.81 3.30 30.22 0.10 2.91 16 13 H 0.08 2.22 6.36 -2.38 -0.02 2.21 16 14 C -0.05 -1.17 4.80 -19.67 -0.09 -1.27 16 15 C -0.15 -2.64 9.46 22.36 0.21 -2.43 16 16 C 0.09 1.67 11.18 84.68 0.95 2.61 16 17 N -0.51 -11.94 10.36 -195.84 -2.03 -13.97 16 18 C 0.09 1.98 11.18 84.68 0.95 2.93 16 19 C -0.17 -3.93 9.80 22.36 0.22 -3.71 16 20 C -0.11 -3.50 3.50 -10.13 -0.04 -3.53 16 21 C 0.17 7.74 7.07 86.48 0.61 8.35 16 22 N -0.64 -32.60 3.70 -716.71 -2.65 -35.25 16 23 C -0.24 -13.16 10.70 84.03 0.90 -12.26 16 24 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 25 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 26 N -0.95 -57.72 11.38 21.65 0.25 -57.47 16 27 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 30 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 31 C 0.13 4.84 7.56 86.48 0.65 5.49 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.54 7.43 -2.39 -0.02 1.52 16 35 H 0.41 7.26 8.60 -92.71 -0.80 6.46 16 36 H 0.10 0.90 7.68 -2.39 -0.02 0.88 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.16 2.12 7.80 -2.91 -0.02 2.10 16 41 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 44 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.00 0.02 7.96 -2.38 -0.02 0.00 16 46 H 0.04 2.17 7.15 -2.39 -0.02 2.16 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 Total: -1.00 -76.65 400.32 1.05 -75.59 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.16 Total: 21.09 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.06 Total: 8.48 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -6.58 Total: -124.89 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.62 Total: -27.97 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.65 1.05 -75.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969689712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.399 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds