Wall clock time and date at job start Wed Apr 1 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46789 * 2 1 4 4 N 1.46494 * 109.47403 * 119.99878 * 2 1 3 5 5 C 1.34780 * 120.00108 * 275.00673 * 4 2 1 6 6 O 1.21584 * 119.99894 * 359.97438 * 5 4 2 7 7 C 1.47614 * 119.99973 * 180.02562 * 5 4 2 8 8 C 1.39693 * 120.09933 * 359.97438 * 7 5 4 9 9 C 1.37697 * 119.88715 * 179.87808 * 8 7 5 10 10 C 1.39088 * 120.40640 * 0.02562 * 9 8 7 11 11 C 1.39239 * 120.10282 * 0.17897 * 10 9 8 12 12 C 1.38731 * 119.67311 * 359.72422 * 11 10 9 13 13 N 1.39912 * 121.85319 * 179.68113 * 11 10 9 14 14 C 1.46905 * 111.00250 * 144.64476 * 13 11 10 15 15 C 1.46748 * 112.12268 * 19.86227 * 13 11 10 16 16 C 1.53418 * 108.58941 * 309.82235 * 15 13 11 17 17 O 1.36016 * 118.58415 * 180.22412 * 10 9 8 18 18 C 1.52996 * 109.47205 * 240.00455 * 2 1 3 19 19 C 1.53946 * 113.74556 * 156.67515 * 18 2 1 20 20 N 1.47573 * 86.11721 * 222.04285 * 19 18 2 21 21 C 1.36942 * 134.49325 * 204.63555 * 20 19 18 22 22 H 1.07997 * 119.99877 * 180.02562 * 21 20 19 23 23 C 1.38809 * 119.99680 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00332 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99906 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46727 * 59.99878 * 25 23 21 27 27 H 1.48494 * 109.47178 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47432 * 300.00239 * 25 23 21 29 29 C 1.47580 * 91.01758 * 24.63687 * 20 19 18 30 30 H 1.09000 * 109.47421 * 299.99991 * 1 2 3 31 31 H 1.09002 * 109.47406 * 60.00244 * 1 2 3 32 32 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00441 * 94.99669 * 4 2 1 34 34 H 1.07999 * 120.05815 * 359.84916 * 8 7 5 35 35 H 1.07996 * 119.79493 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.94070 * 180.19643 * 12 11 10 37 37 H 1.08996 * 109.46959 * 301.84325 * 14 13 11 38 38 H 1.08999 * 109.46716 * 61.84448 * 14 13 11 39 39 H 1.09003 * 109.46856 * 181.83959 * 14 13 11 40 40 H 1.09000 * 109.62138 * 69.55335 * 15 13 11 41 41 H 1.09004 * 109.62253 * 190.09025 * 15 13 11 42 42 H 1.08992 * 109.77765 * 182.95232 * 16 15 13 43 43 H 1.09005 * 109.77403 * 303.75040 * 16 15 13 44 44 H 1.09006 * 112.94180 * 288.40477 * 18 2 1 45 45 H 1.09000 * 113.76765 * 336.34520 * 19 18 2 46 46 H 1.08996 * 113.77406 * 107.73637 * 19 18 2 47 47 H 0.96997 * 120.00057 * 180.02562 * 24 23 21 48 48 H 1.08993 * 113.77344 * 221.05687 * 29 20 19 49 49 H 1.09000 * 113.76802 * 89.65895 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1616 2.4116 7 6 2.6396 -0.7139 3.5622 8 6 2.9726 -2.0692 3.5018 9 6 3.4342 -2.7133 4.6280 10 6 3.5709 -2.0227 5.8276 11 6 3.2373 -0.6727 5.8982 12 6 2.7739 -0.0196 4.7654 13 7 3.3543 0.0555 7.0871 14 6 3.7699 1.4387 6.8185 15 6 4.2612 -0.5898 8.0435 16 6 3.8538 -2.0619 8.1869 17 8 4.0345 -2.6942 6.9158 18 6 2.0400 -0.7211 -1.2493 19 6 3.4666 -0.3145 -1.6608 20 7 2.9584 -0.3119 -3.0462 21 6 3.5328 -0.4676 -4.2795 22 1 2.9224 -0.4218 -5.1692 23 6 4.8998 -0.6844 -4.3860 24 7 5.6438 -0.7397 -3.3017 25 14 5.6834 -0.8976 -6.0683 26 1 5.4491 0.3227 -6.8816 27 1 7.1440 -1.1136 -5.9102 28 1 5.0799 -2.0704 -6.7504 29 6 1.5823 -0.0740 -2.5689 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1527 34 1 2.8678 -2.6111 2.5735 35 1 3.6908 -3.7612 4.5797 36 1 2.5170 1.0282 4.8145 37 1 4.7201 1.4354 6.2846 38 1 3.0130 1.9338 6.2102 39 1 3.8847 1.9732 7.7616 40 1 5.2854 -0.5276 7.6759 41 1 4.1863 -0.0934 9.0111 42 1 4.4826 -2.5476 8.9330 43 1 2.8077 -2.1276 8.4860 44 1 1.8828 -1.7991 -1.2115 45 1 3.7640 0.6702 -1.3001 46 1 4.2152 -1.0831 -1.4688 47 1 6.5990 -0.8908 -3.3762 48 1 0.8265 -0.6505 -3.1021 49 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969959688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:15 Heat of formation + Delta-G solvation = 24.842767 kcal Electronic energy + Delta-G solvation = -30017.893265 eV Core-core repulsion = 25947.435227 eV Total energy + Delta-G solvation = -4070.458038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.42798 -39.83691 -38.22189 -37.36964 -36.86321 -34.78505 -32.29475 -31.53071 -30.78426 -30.18034 -29.14264 -27.48764 -25.87720 -24.93328 -24.70427 -23.95304 -22.71038 -21.74543 -20.94629 -19.97984 -19.07786 -18.53737 -17.59865 -17.16051 -16.73877 -16.27356 -15.89448 -15.44905 -14.97754 -14.89777 -14.84522 -14.59374 -14.36363 -14.31337 -13.95484 -13.79288 -13.47723 -13.44452 -13.01381 -12.75157 -12.50251 -12.40767 -12.18863 -12.09241 -11.89327 -11.63606 -11.34135 -11.26946 -11.25162 -11.02594 -10.87839 -10.71479 -10.34448 -10.27380 -9.99050 -9.73168 -9.68985 -9.37587 -8.85513 -8.76965 -8.68877 -7.96197 -6.84819 -5.73981 -3.06320 0.73218 1.08003 2.69081 2.96724 3.16944 3.40394 3.41543 3.45103 3.46391 3.78495 4.07371 4.29973 4.47378 4.53146 4.57444 4.73650 4.87550 4.94055 4.96769 5.02458 5.04250 5.13303 5.19417 5.24402 5.31301 5.33367 5.46071 5.55105 5.56949 5.68794 5.73192 5.84138 5.91575 5.98456 6.06722 6.12977 6.22074 6.29603 6.39455 6.44289 6.46314 6.59788 6.61918 6.69797 6.85151 7.05823 7.26555 7.39516 7.58823 7.71716 8.01153 8.39448 9.07442 9.73547 10.63250 11.42924 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.002221 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.586919 B =12602.405554 C =13362.872467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.561 3.439 6 O -0.544 6.544 7 C -0.136 4.136 8 C -0.074 4.074 9 C -0.130 4.130 10 C 0.110 3.890 11 C 0.030 3.970 12 C -0.063 4.063 13 N -0.490 5.490 14 C 0.021 3.979 15 C 0.012 3.988 16 C 0.058 3.942 17 O -0.312 6.312 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.399 0.601 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.026 0.974 46 H 0.071 0.929 47 H 0.254 0.746 48 H 0.044 0.956 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -2.776 25.362 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.362 5.362 5 C 0.348 3.652 6 O -0.423 6.423 7 C -0.140 4.140 8 C -0.094 4.094 9 C -0.149 4.149 10 C 0.062 3.938 11 C -0.067 4.067 12 C -0.085 4.085 13 N -0.206 5.206 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.018 4.018 17 O -0.225 6.225 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.003 3.997 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.010 -2.105 25.435 26.220 hybrid contribution 1.266 -0.274 -1.062 1.675 sum -4.744 -2.379 24.373 24.944 Atomic orbital electron populations 1.22135 0.95637 1.01779 1.02112 1.21112 0.93499 0.97617 0.83155 0.89373 1.46008 1.66575 1.14072 1.09534 1.18075 0.77630 0.86446 0.83035 1.90754 1.50857 1.15514 1.85135 1.19758 1.05576 0.94335 0.94284 1.21077 0.96911 0.93258 0.98127 1.20372 1.03623 1.00650 0.90260 1.18892 0.97253 0.89495 0.88129 1.18760 1.05122 0.92064 0.90785 1.20976 0.97337 1.00650 0.89500 1.58887 1.48149 1.03642 1.09966 1.22596 1.00523 0.86808 1.02534 1.22844 0.94968 0.95854 0.97840 1.23183 1.02992 0.91661 0.83931 1.86213 1.76590 1.45875 1.13868 1.23825 1.00963 0.99680 0.92222 1.22261 0.91705 0.98290 0.83208 1.45950 1.02491 1.83296 1.02158 1.18976 0.91082 1.42074 0.82916 0.90342 1.24784 0.95976 1.02466 0.97292 1.69808 1.05196 1.55598 1.26258 0.86207 0.78322 0.77984 0.83289 1.21220 1.21585 1.21097 1.22496 0.89687 0.96757 0.90714 0.92740 0.91398 0.92715 0.76620 0.84584 0.84298 0.83849 0.93872 0.89685 0.90335 0.92264 0.88000 0.86610 0.90466 0.89383 0.95664 0.91033 0.93639 0.93753 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.29 37.16 0.35 -1.80 16 2 C 0.15 2.36 2.42 -67.94 -0.16 2.20 16 3 H 0.09 1.60 7.37 -51.93 -0.38 1.21 16 4 N -0.71 -9.98 5.03 -54.83 -0.28 -10.26 16 5 C 0.56 8.55 7.73 -12.43 -0.10 8.45 16 6 O -0.54 -10.00 16.00 5.29 0.08 -9.91 16 7 C -0.14 -1.76 5.87 -105.04 -0.62 -2.38 16 8 C -0.07 -0.80 9.53 -39.24 -0.37 -1.18 16 9 C -0.13 -1.36 9.91 -39.46 -0.39 -1.75 16 10 C 0.11 1.23 6.48 -38.89 -0.25 0.98 16 11 C 0.03 0.34 5.82 -83.62 -0.49 -0.14 16 12 C -0.06 -0.79 8.61 -38.91 -0.33 -1.13 16 13 N -0.49 -4.55 4.89 -178.69 -0.87 -5.42 16 14 C 0.02 0.17 8.89 60.07 0.53 0.70 16 15 C 0.01 0.08 5.71 -3.69 -0.02 0.06 16 16 C 0.06 0.38 7.25 37.37 0.27 0.65 16 17 O -0.31 -3.15 10.39 -19.79 -0.21 -3.35 16 18 C -0.15 -2.63 3.50 -89.70 -0.31 -2.95 16 19 C 0.17 4.01 7.07 -2.98 -0.02 3.99 16 20 N -0.61 -15.83 3.70 -177.94 -0.66 -16.49 16 21 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.56 11.38 55.49 0.63 -26.93 16 25 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.13 2.62 7.56 -2.98 -0.02 2.60 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.88 7.43 -51.93 -0.39 0.50 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.68 6.63 -40.82 -0.27 4.41 16 34 H 0.14 1.18 6.40 -52.49 -0.34 0.85 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.80 5.64 -52.49 -0.30 1.51 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.70 6.27 -51.93 -0.33 0.37 16 39 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.03 0.63 7.96 -51.93 -0.41 0.22 16 46 H 0.07 1.85 7.15 -51.93 -0.37 1.47 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -34.86 392.57 -10.00 -44.86 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.39 Total: 2.81 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.20 Total: 1.48 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -1.18 Total: -59.09 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.12 Total: -13.27 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.86 -10.00 -44.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969959688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.706 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds