Wall clock time and date at job start Wed Apr 1 2020 03:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46789 * 2 1 4 4 N 1.46494 * 109.47403 * 119.99878 * 2 1 3 5 5 C 1.34780 * 120.00108 * 275.00673 * 4 2 1 6 6 O 1.21584 * 119.99894 * 359.97438 * 5 4 2 7 7 C 1.47614 * 119.99973 * 180.02562 * 5 4 2 8 8 C 1.39693 * 120.09933 * 359.97438 * 7 5 4 9 9 C 1.37697 * 119.88715 * 179.87808 * 8 7 5 10 10 C 1.39088 * 120.40640 * 0.02562 * 9 8 7 11 11 C 1.39239 * 120.10282 * 0.17897 * 10 9 8 12 12 C 1.38731 * 119.67311 * 359.72422 * 11 10 9 13 13 N 1.39912 * 121.85319 * 179.68113 * 11 10 9 14 14 C 1.46905 * 111.00250 * 144.64476 * 13 11 10 15 15 C 1.46748 * 112.12268 * 19.86227 * 13 11 10 16 16 C 1.53418 * 108.58941 * 309.82235 * 15 13 11 17 17 O 1.36016 * 118.58415 * 180.22412 * 10 9 8 18 18 C 1.52996 * 109.47205 * 240.00455 * 2 1 3 19 19 C 1.53946 * 113.74556 * 156.67515 * 18 2 1 20 20 N 1.47573 * 86.11721 * 222.04285 * 19 18 2 21 21 C 1.36942 * 134.49325 * 204.63555 * 20 19 18 22 22 H 1.07997 * 119.99877 * 180.02562 * 21 20 19 23 23 C 1.38809 * 119.99680 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00332 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99906 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46727 * 59.99878 * 25 23 21 27 27 H 1.48494 * 109.47178 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47432 * 300.00239 * 25 23 21 29 29 C 1.47580 * 91.01758 * 24.63687 * 20 19 18 30 30 H 1.09000 * 109.47421 * 299.99991 * 1 2 3 31 31 H 1.09002 * 109.47406 * 60.00244 * 1 2 3 32 32 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00441 * 94.99669 * 4 2 1 34 34 H 1.07999 * 120.05815 * 359.84916 * 8 7 5 35 35 H 1.07996 * 119.79493 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.94070 * 180.19643 * 12 11 10 37 37 H 1.08996 * 109.46959 * 301.84325 * 14 13 11 38 38 H 1.08999 * 109.46716 * 61.84448 * 14 13 11 39 39 H 1.09003 * 109.46856 * 181.83959 * 14 13 11 40 40 H 1.09000 * 109.62138 * 69.55335 * 15 13 11 41 41 H 1.09004 * 109.62253 * 190.09025 * 15 13 11 42 42 H 1.08992 * 109.77765 * 182.95232 * 16 15 13 43 43 H 1.09005 * 109.77403 * 303.75040 * 16 15 13 44 44 H 1.09006 * 112.94180 * 288.40477 * 18 2 1 45 45 H 1.09000 * 113.76765 * 336.34520 * 19 18 2 46 46 H 1.08996 * 113.77406 * 107.73637 * 19 18 2 47 47 H 0.96997 * 120.00057 * 180.02562 * 24 23 21 48 48 H 1.08993 * 113.77344 * 221.05687 * 29 20 19 49 49 H 1.09000 * 113.76802 * 89.65895 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1616 2.4116 7 6 2.6396 -0.7139 3.5622 8 6 2.9726 -2.0692 3.5018 9 6 3.4342 -2.7133 4.6280 10 6 3.5709 -2.0227 5.8276 11 6 3.2373 -0.6727 5.8982 12 6 2.7739 -0.0196 4.7654 13 7 3.3543 0.0555 7.0871 14 6 3.7699 1.4387 6.8185 15 6 4.2612 -0.5898 8.0435 16 6 3.8538 -2.0619 8.1869 17 8 4.0345 -2.6942 6.9158 18 6 2.0400 -0.7211 -1.2493 19 6 3.4666 -0.3145 -1.6608 20 7 2.9584 -0.3119 -3.0462 21 6 3.5328 -0.4676 -4.2795 22 1 2.9224 -0.4218 -5.1692 23 6 4.8998 -0.6844 -4.3860 24 7 5.6438 -0.7397 -3.3017 25 14 5.6834 -0.8976 -6.0683 26 1 5.4491 0.3227 -6.8816 27 1 7.1440 -1.1136 -5.9102 28 1 5.0799 -2.0704 -6.7504 29 6 1.5823 -0.0740 -2.5689 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1527 34 1 2.8678 -2.6111 2.5735 35 1 3.6908 -3.7612 4.5797 36 1 2.5170 1.0282 4.8145 37 1 4.7201 1.4354 6.2846 38 1 3.0130 1.9338 6.2102 39 1 3.8847 1.9732 7.7616 40 1 5.2854 -0.5276 7.6759 41 1 4.1863 -0.0934 9.0111 42 1 4.4826 -2.5476 8.9330 43 1 2.8077 -2.1276 8.4860 44 1 1.8828 -1.7991 -1.2115 45 1 3.7640 0.6702 -1.3001 46 1 4.2152 -1.0831 -1.4688 47 1 6.5990 -0.8908 -3.3762 48 1 0.8265 -0.6505 -3.1021 49 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969959688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:14 Heat of formation + Delta-G solvation = 0.757134 kcal Electronic energy + Delta-G solvation = -30018.937697 eV Core-core repulsion = 25947.435227 eV Total energy + Delta-G solvation = -4071.502470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.20163 -41.05267 -39.75239 -38.25405 -37.65032 -36.20777 -34.19540 -32.61301 -31.61548 -31.23442 -29.95066 -29.31982 -26.86251 -26.31134 -25.69615 -25.49355 -23.81288 -22.76521 -22.19966 -21.18703 -20.39173 -19.38366 -18.76277 -18.54799 -17.95656 -17.30094 -16.99986 -16.86419 -16.28097 -15.91699 -15.78058 -15.65577 -15.54580 -15.37883 -15.11660 -14.81407 -14.70169 -14.63274 -14.27050 -13.99802 -13.54019 -13.40453 -13.24071 -13.13826 -13.07137 -12.88436 -12.84972 -12.65903 -12.60932 -12.56118 -12.06288 -11.98278 -11.74841 -11.72062 -11.49511 -11.24264 -11.03063 -10.95544 -10.83692 -10.07723 -9.60240 -8.91245 -8.74586 -7.89464 -5.23319 -0.20114 0.23335 1.45256 1.48971 1.55010 1.75379 2.11984 2.21280 2.48151 2.56793 2.84686 3.30997 3.39081 3.43602 3.60303 3.68477 3.81595 3.92785 4.01785 4.05801 4.12132 4.20090 4.28686 4.31877 4.39371 4.45145 4.50448 4.60857 4.63053 4.69582 4.75741 4.76220 4.83375 4.86329 4.87687 4.92858 5.02459 5.05862 5.13421 5.26472 5.27073 5.35481 5.40064 5.50505 5.57795 5.68189 5.75707 5.86068 5.94934 6.29444 6.57776 6.92644 7.23056 7.61877 8.57833 9.27077 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.002221 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.586919 B =12602.405554 C =13362.872467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.060 0.940 4 N -0.704 5.704 5 C 0.560 3.440 6 O -0.583 6.583 7 C -0.154 4.154 8 C -0.070 4.070 9 C -0.132 4.132 10 C 0.106 3.894 11 C 0.026 3.974 12 C -0.077 4.077 13 N -0.499 5.499 14 C 0.021 3.979 15 C 0.010 3.990 16 C 0.051 3.949 17 O -0.321 6.321 18 C -0.109 4.109 19 C 0.167 3.833 20 N -0.645 5.645 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.980 3.020 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.130 3.870 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.134 0.866 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.131 0.869 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.001 0.999 46 H 0.042 0.958 47 H 0.248 0.752 48 H 0.066 0.934 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -4.311 26.364 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.078 0.922 4 N -0.355 5.355 5 C 0.349 3.651 6 O -0.465 6.465 7 C -0.158 4.158 8 C -0.089 4.089 9 C -0.151 4.151 10 C 0.057 3.943 11 C -0.072 4.072 12 C -0.098 4.098 13 N -0.215 5.215 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.023 4.023 17 O -0.235 6.235 18 C -0.129 4.129 19 C 0.041 3.959 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.005 3.995 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.249 0.751 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.151 0.849 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.149 0.851 42 H 0.166 0.834 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.019 0.981 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.934 -3.661 26.451 27.588 hybrid contribution 1.538 0.229 -1.248 1.994 sum -5.396 -3.431 25.202 26.001 Atomic orbital electron populations 1.22052 0.93210 1.03236 1.02256 1.20863 0.95162 0.95835 0.82724 0.92222 1.45884 1.66248 1.14602 1.08776 1.18429 0.76885 0.86029 0.83755 1.90725 1.52718 1.17244 1.85795 1.19645 1.07376 0.95345 0.93417 1.21265 0.96136 0.92314 0.99229 1.20655 1.02986 1.01613 0.89854 1.19107 0.96723 0.89516 0.88935 1.18880 1.04680 0.92485 0.91153 1.20977 0.98265 1.00434 0.90160 1.58944 1.49008 1.04083 1.09418 1.22623 0.99646 0.86490 1.03658 1.23015 0.94116 0.96129 0.98359 1.23526 1.04003 0.91764 0.83032 1.86203 1.76283 1.46371 1.14658 1.23452 0.96229 1.00677 0.92493 1.22147 0.94253 0.96262 0.83193 1.46390 1.05145 1.83501 1.02072 1.19418 0.91606 1.40971 0.84378 0.89723 1.25660 0.96663 1.03029 1.00934 1.70012 1.04898 1.57135 1.28299 0.85138 0.76809 0.78275 0.79030 1.20591 1.22148 1.19814 1.22689 0.87731 0.97696 0.91371 0.93270 0.90626 0.90546 0.75092 0.82552 0.82210 0.84857 0.94665 0.90775 0.87766 0.92661 0.85110 0.83362 0.90263 0.87431 0.98119 0.93910 0.94358 0.91535 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16 2 C 0.16 4.91 2.42 44.99 0.11 5.02 16 3 H 0.06 2.22 7.37 -2.38 -0.02 2.20 16 4 N -0.70 -19.49 5.03 -445.63 -2.24 -21.74 16 5 C 0.56 17.45 7.73 86.72 0.67 18.12 16 6 O -0.58 -22.38 16.00 -3.98 -0.06 -22.44 16 7 C -0.15 -4.05 5.87 -20.13 -0.12 -4.17 16 8 C -0.07 -1.45 9.53 22.49 0.21 -1.24 16 9 C -0.13 -2.59 9.91 22.35 0.22 -2.37 16 10 C 0.11 2.26 6.48 22.71 0.15 2.40 16 11 C 0.03 0.59 5.82 38.21 0.22 0.81 16 12 C -0.08 -1.98 8.61 22.71 0.20 -1.79 16 13 N -0.50 -8.81 4.89 -719.25 -3.52 -12.33 16 14 C 0.02 0.33 8.89 127.69 1.14 1.46 16 15 C 0.01 0.11 5.71 86.47 0.49 0.61 16 16 C 0.05 0.56 7.25 72.12 0.52 1.08 16 17 O -0.32 -5.91 10.39 -93.73 -0.97 -6.88 16 18 C -0.11 -3.80 3.50 -10.14 -0.04 -3.84 16 19 C 0.17 8.05 7.07 86.48 0.61 8.67 16 20 N -0.64 -33.45 3.70 -716.87 -2.65 -36.10 16 21 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 22 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 23 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 24 N -0.95 -58.64 11.38 21.65 0.25 -58.39 16 25 Si 0.98 46.26 29.55 68.60 2.03 48.28 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 C 0.13 5.08 7.56 86.48 0.65 5.73 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.79 7.43 -2.39 -0.02 1.78 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.41 9.13 6.63 -92.71 -0.61 8.52 16 34 H 0.16 2.45 6.40 -2.91 -0.02 2.43 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.13 3.62 5.64 -2.91 -0.02 3.60 16 37 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 1.29 6.27 -2.39 -0.01 1.27 16 39 H 0.10 1.02 8.11 -2.39 -0.02 1.00 16 40 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 45 H 0.00 0.05 7.96 -2.39 -0.02 0.03 16 46 H 0.04 2.29 7.15 -2.39 -0.02 2.27 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.04 1.62 8.06 -2.39 -0.02 1.60 16 Total: -1.00 -77.87 392.57 0.26 -77.61 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.35 Total: 20.65 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.08 Total: 11.33 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -8.16 Total: -128.55 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.04 Total: -29.32 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.87 0.26 -77.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969959688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds