Wall clock time and date at job start Wed Apr 1 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46830 * 2 1 4 4 N 1.46501 * 109.47252 * 240.00671 * 2 1 3 5 5 C 1.34774 * 120.00421 * 84.99268 * 4 2 1 6 6 O 1.21582 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.47616 * 120.00311 * 179.97438 * 5 4 2 8 8 C 1.39696 * 120.09293 * 0.02990 * 7 5 4 9 9 C 1.37703 * 119.88213 * 180.02562 * 8 7 5 10 10 C 1.39081 * 120.41107 * 359.97438 * 9 8 7 11 11 C 1.39248 * 120.09848 * 359.88081 * 10 9 8 12 12 C 1.38736 * 119.67580 * 0.20073 * 11 10 9 13 13 N 1.39912 * 121.84191 * 180.26640 * 11 10 9 14 14 C 1.46906 * 111.00171 * 215.16777 * 13 11 10 15 15 C 1.46750 * 112.12024 * 339.94647 * 13 11 10 16 16 C 1.53420 * 108.58233 * 50.23872 * 15 13 11 17 17 O 1.36003 * 118.59131 * 179.56023 * 10 9 8 18 18 C 1.52992 * 109.47515 * 120.00182 * 2 1 3 19 19 C 1.53949 * 113.74391 * 282.20108 * 18 2 1 20 20 N 1.47808 * 86.03659 * 222.08041 * 19 18 2 21 21 C 1.36934 * 134.45750 * 204.63879 * 20 19 18 22 22 H 1.08004 * 120.00424 * 182.58921 * 21 20 19 23 23 C 1.38815 * 119.99924 * 2.58819 * 21 20 19 24 24 N 1.31622 * 119.99685 * 353.41091 * 23 21 20 25 25 Si 1.86802 * 120.00044 * 173.41274 * 23 21 20 26 26 H 1.48501 * 109.47017 * 94.97442 * 25 23 21 27 27 H 1.48503 * 109.46825 * 214.96968 * 25 23 21 28 28 H 1.48496 * 109.47166 * 334.97364 * 25 23 21 29 29 C 1.47578 * 91.05300 * 24.54710 * 20 19 18 30 30 H 1.08996 * 109.46737 * 184.48549 * 1 2 3 31 31 H 1.08994 * 109.46934 * 304.48302 * 1 2 3 32 32 H 1.09007 * 109.47226 * 64.48582 * 1 2 3 33 33 H 0.97009 * 119.99651 * 264.99845 * 4 2 1 34 34 H 1.08003 * 120.06244 * 0.02562 * 8 7 5 35 35 H 1.08003 * 119.79590 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.93803 * 179.88143 * 12 11 10 37 37 H 1.08997 * 109.47257 * 181.44645 * 14 13 11 38 38 H 1.08994 * 109.46890 * 301.45772 * 14 13 11 39 39 H 1.09006 * 109.46465 * 61.44991 * 14 13 11 40 40 H 1.08993 * 109.62572 * 169.96834 * 15 13 11 41 41 H 1.09005 * 109.62059 * 290.51029 * 15 13 11 42 42 H 1.09001 * 109.77454 * 56.28836 * 16 15 13 43 43 H 1.09003 * 109.77530 * 177.08022 * 16 15 13 44 44 H 1.09006 * 112.94389 * 53.78901 * 18 2 1 45 45 H 1.09003 * 113.76304 * 336.34818 * 19 18 2 46 46 H 1.09000 * 113.76909 * 107.74099 * 19 18 2 47 47 H 0.97000 * 119.99398 * 179.97438 * 24 23 21 48 48 H 1.08998 * 113.77327 * 221.14714 * 29 20 19 49 49 H 1.09009 * 113.87276 * 89.76345 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1617 -2.4117 7 6 2.6396 -0.7137 -3.5624 8 6 2.9725 -2.0691 -3.5020 9 6 3.4321 -2.7136 -4.6287 10 6 3.5670 -2.0235 -5.8288 11 6 3.2347 -0.6731 -5.8990 12 6 2.7729 -0.0196 -4.7657 13 7 3.3511 0.0548 -7.0881 14 6 3.7641 1.4389 -6.8199 15 6 4.2596 -0.5893 -8.0437 16 6 3.8538 -2.0619 -8.1876 17 8 4.0329 -2.6942 -6.9163 18 6 2.0401 -0.7212 1.2491 19 6 1.9660 0.1297 2.5299 20 7 3.3033 -0.4146 2.8461 21 6 4.0104 -0.6099 4.0024 22 1 5.0168 -0.9996 3.9607 23 6 3.4337 -0.3070 5.2282 24 7 2.2603 0.2875 5.2744 25 14 4.3229 -0.7432 6.8121 26 1 5.0969 0.4325 7.2851 27 1 3.3302 -1.1310 7.8463 28 1 5.2482 -1.8778 6.5639 29 6 3.5694 -0.6651 1.4163 30 1 -0.3633 -1.0245 0.0804 31 1 -0.3633 0.5818 0.8471 32 1 -0.3634 0.4427 -0.9275 33 1 2.2491 -1.6317 -1.1527 34 1 2.8695 -2.6106 -2.5732 35 1 3.6887 -3.7616 -4.5806 36 1 2.5158 1.0282 -4.8148 37 1 3.8219 1.9892 -7.7590 38 1 3.0353 1.9148 -6.1640 39 1 4.7417 1.4393 -6.3377 40 1 4.1852 -0.0930 -9.0112 41 1 5.2834 -0.5262 -7.6750 42 1 2.8083 -2.1286 -8.4885 43 1 4.4843 -2.5470 -8.9328 44 1 1.6227 -1.7218 1.3623 45 1 1.9614 1.2037 2.3440 46 1 1.1864 -0.1866 3.2230 47 1 1.8572 0.4988 6.1310 48 1 4.0678 -1.6148 1.2220 49 1 4.0371 0.1739 0.9010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969959693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:19 Heat of formation + Delta-G solvation = 24.910241 kcal Electronic energy + Delta-G solvation = -29946.838471 eV Core-core repulsion = 25876.383358 eV Total energy + Delta-G solvation = -4070.455112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.48320 -39.88297 -38.21015 -37.41103 -36.91393 -34.79774 -32.27263 -31.58580 -30.84566 -30.24576 -29.19570 -27.45477 -25.91478 -24.96384 -24.69743 -24.00923 -22.73801 -21.78053 -20.95184 -19.98099 -19.14450 -18.60014 -17.67124 -17.21045 -16.77960 -16.27211 -15.89911 -15.49579 -15.02941 -14.93969 -14.79440 -14.63996 -14.39472 -14.30331 -14.02378 -13.89999 -13.53496 -13.50025 -13.11085 -12.79222 -12.55426 -12.29042 -12.21522 -12.07324 -11.93928 -11.54798 -11.37261 -11.35381 -11.21819 -11.07127 -10.88627 -10.63965 -10.36019 -10.32577 -10.07413 -9.79610 -9.64340 -9.41348 -8.91345 -8.76284 -8.70330 -8.01432 -6.86265 -5.75623 -3.06322 0.67467 1.01874 2.63793 2.91455 3.12642 3.35722 3.40276 3.45244 3.47512 3.72851 4.02242 4.24449 4.46950 4.48626 4.52700 4.68840 4.81956 4.88784 4.92879 4.96910 4.98757 5.11802 5.15323 5.18996 5.22985 5.41116 5.43404 5.50078 5.56501 5.64757 5.70449 5.84595 5.86859 6.03402 6.07190 6.09814 6.18112 6.31405 6.38977 6.41004 6.48729 6.54578 6.62042 6.65922 6.84388 7.00338 7.24184 7.39665 7.57301 7.67779 8.00048 8.35162 9.06561 9.72974 10.62598 11.42120 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002037 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.869823 B =13739.783647 C =14206.446493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.088 0.912 4 N -0.713 5.713 5 C 0.560 3.440 6 O -0.543 6.543 7 C -0.136 4.136 8 C -0.075 4.075 9 C -0.130 4.130 10 C 0.110 3.890 11 C 0.031 3.969 12 C -0.064 4.064 13 N -0.490 5.490 14 C 0.021 3.979 15 C 0.012 3.988 16 C 0.058 3.942 17 O -0.312 6.312 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.041 0.959 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -4.733 -29.163 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.363 5.363 5 C 0.347 3.653 6 O -0.421 6.421 7 C -0.140 4.140 8 C -0.095 4.095 9 C -0.149 4.149 10 C 0.062 3.938 11 C -0.067 4.067 12 C -0.085 4.085 13 N -0.206 5.206 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.018 4.018 17 O -0.226 6.226 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.233 -4.007 -29.111 29.386 hybrid contribution 1.229 -0.357 1.036 1.646 sum 1.462 -4.364 -28.075 28.450 Atomic orbital electron populations 1.22109 0.95372 1.01938 1.02164 1.21132 0.93839 0.97492 0.82902 0.89370 1.46053 1.66587 1.14034 1.09632 1.18084 0.77746 0.86485 0.83024 1.90763 1.50756 1.15532 1.85067 1.19773 1.05517 0.94333 0.94329 1.21069 0.97072 0.93240 0.98128 1.20369 1.03688 1.00617 0.90246 1.18887 0.97278 0.89487 0.88140 1.18773 1.05056 0.92054 0.90776 1.20995 0.97356 1.00695 0.89500 1.58880 1.48127 1.03656 1.09966 1.22611 1.00377 0.86771 1.02757 1.22845 0.94890 0.95862 0.97890 1.23190 1.03054 0.91644 0.83887 1.86208 1.76476 1.45957 1.13916 1.23845 0.97608 1.00729 0.94523 1.22230 0.89598 0.93951 0.89201 1.46047 1.16095 1.72069 0.99658 1.19027 0.96875 1.36556 0.82567 0.90334 1.24784 0.97328 1.00938 0.97441 1.69827 1.17212 1.45580 1.24183 0.86121 0.78387 0.78020 0.83356 1.21718 1.21594 1.20594 1.22533 0.93105 0.97692 0.86748 0.92701 0.91124 0.92789 0.76749 0.84628 0.84319 0.83799 0.90266 0.89602 0.93959 0.87965 0.92280 0.90432 0.86581 0.89294 0.95382 0.90839 0.93653 0.94107 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.43 37.16 0.35 -1.90 16 2 C 0.15 2.35 2.29 -67.93 -0.16 2.20 16 3 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 4 N -0.71 -9.50 4.90 -54.83 -0.27 -9.77 16 5 C 0.56 8.15 7.73 -12.43 -0.10 8.05 16 6 O -0.54 -9.73 16.00 5.29 0.08 -9.64 16 7 C -0.14 -1.65 5.87 -105.04 -0.62 -2.27 16 8 C -0.08 -0.75 9.53 -39.23 -0.37 -1.12 16 9 C -0.13 -1.26 9.91 -39.46 -0.39 -1.65 16 10 C 0.11 1.16 6.48 -38.89 -0.25 0.90 16 11 C 0.03 0.33 5.82 -83.61 -0.49 -0.15 16 12 C -0.06 -0.76 8.61 -38.91 -0.33 -1.10 16 13 N -0.49 -4.29 4.89 -178.68 -0.87 -5.16 16 14 C 0.02 0.15 8.98 60.07 0.54 0.69 16 15 C 0.01 0.07 5.72 -3.69 -0.02 0.05 16 16 C 0.06 0.35 7.25 37.38 0.27 0.62 16 17 O -0.31 -2.95 10.39 -19.75 -0.21 -3.16 16 18 C -0.15 -2.63 3.35 -89.70 -0.30 -2.93 16 19 C 0.18 4.09 7.02 -2.84 -0.02 4.07 16 20 N -0.61 -15.81 3.70 -177.70 -0.66 -16.47 16 21 C -0.22 -6.31 10.69 -15.06 -0.16 -6.47 16 22 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.47 11.43 55.49 0.63 -26.84 16 25 Si 0.91 22.28 29.56 -169.99 -5.02 17.26 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 C 0.13 2.54 8.38 -2.97 -0.02 2.52 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.30 6.63 -40.82 -0.27 4.03 16 34 H 0.14 1.04 6.40 -52.48 -0.34 0.70 16 35 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.14 1.73 5.56 -52.49 -0.29 1.44 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.67 6.09 -51.93 -0.32 0.36 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.07 1.87 7.20 -51.93 -0.37 1.50 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.03 0.66 8.10 -51.92 -0.42 0.23 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -34.76 394.01 -9.98 -44.73 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.43 Total: 1.94 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.17 Total: 1.18 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.17 Total: -58.24 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.12 Total: -12.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.76 -9.98 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969959693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.643 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds