Wall clock time and date at job start Wed Apr 1 2020 03:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46830 * 2 1 4 4 N 1.46501 * 109.47252 * 240.00671 * 2 1 3 5 5 C 1.34774 * 120.00421 * 84.99268 * 4 2 1 6 6 O 1.21582 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.47616 * 120.00311 * 179.97438 * 5 4 2 8 8 C 1.39696 * 120.09293 * 0.02990 * 7 5 4 9 9 C 1.37703 * 119.88213 * 180.02562 * 8 7 5 10 10 C 1.39081 * 120.41107 * 359.97438 * 9 8 7 11 11 C 1.39248 * 120.09848 * 359.88081 * 10 9 8 12 12 C 1.38736 * 119.67580 * 0.20073 * 11 10 9 13 13 N 1.39912 * 121.84191 * 180.26640 * 11 10 9 14 14 C 1.46906 * 111.00171 * 215.16777 * 13 11 10 15 15 C 1.46750 * 112.12024 * 339.94647 * 13 11 10 16 16 C 1.53420 * 108.58233 * 50.23872 * 15 13 11 17 17 O 1.36003 * 118.59131 * 179.56023 * 10 9 8 18 18 C 1.52992 * 109.47515 * 120.00182 * 2 1 3 19 19 C 1.53949 * 113.74391 * 282.20108 * 18 2 1 20 20 N 1.47808 * 86.03659 * 222.08041 * 19 18 2 21 21 C 1.36934 * 134.45750 * 204.63879 * 20 19 18 22 22 H 1.08004 * 120.00424 * 182.58921 * 21 20 19 23 23 C 1.38815 * 119.99924 * 2.58819 * 21 20 19 24 24 N 1.31622 * 119.99685 * 353.41091 * 23 21 20 25 25 Si 1.86802 * 120.00044 * 173.41274 * 23 21 20 26 26 H 1.48501 * 109.47017 * 94.97442 * 25 23 21 27 27 H 1.48503 * 109.46825 * 214.96968 * 25 23 21 28 28 H 1.48496 * 109.47166 * 334.97364 * 25 23 21 29 29 C 1.47578 * 91.05300 * 24.54710 * 20 19 18 30 30 H 1.08996 * 109.46737 * 184.48549 * 1 2 3 31 31 H 1.08994 * 109.46934 * 304.48302 * 1 2 3 32 32 H 1.09007 * 109.47226 * 64.48582 * 1 2 3 33 33 H 0.97009 * 119.99651 * 264.99845 * 4 2 1 34 34 H 1.08003 * 120.06244 * 0.02562 * 8 7 5 35 35 H 1.08003 * 119.79590 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.93803 * 179.88143 * 12 11 10 37 37 H 1.08997 * 109.47257 * 181.44645 * 14 13 11 38 38 H 1.08994 * 109.46890 * 301.45772 * 14 13 11 39 39 H 1.09006 * 109.46465 * 61.44991 * 14 13 11 40 40 H 1.08993 * 109.62572 * 169.96834 * 15 13 11 41 41 H 1.09005 * 109.62059 * 290.51029 * 15 13 11 42 42 H 1.09001 * 109.77454 * 56.28836 * 16 15 13 43 43 H 1.09003 * 109.77530 * 177.08022 * 16 15 13 44 44 H 1.09006 * 112.94389 * 53.78901 * 18 2 1 45 45 H 1.09003 * 113.76304 * 336.34818 * 19 18 2 46 46 H 1.09000 * 113.76909 * 107.74099 * 19 18 2 47 47 H 0.97000 * 119.99398 * 179.97438 * 24 23 21 48 48 H 1.08998 * 113.77327 * 221.14714 * 29 20 19 49 49 H 1.09009 * 113.87276 * 89.76345 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1617 -2.4117 7 6 2.6396 -0.7137 -3.5624 8 6 2.9725 -2.0691 -3.5020 9 6 3.4321 -2.7136 -4.6287 10 6 3.5670 -2.0235 -5.8288 11 6 3.2347 -0.6731 -5.8990 12 6 2.7729 -0.0196 -4.7657 13 7 3.3511 0.0548 -7.0881 14 6 3.7641 1.4389 -6.8199 15 6 4.2596 -0.5893 -8.0437 16 6 3.8538 -2.0619 -8.1876 17 8 4.0329 -2.6942 -6.9163 18 6 2.0401 -0.7212 1.2491 19 6 1.9660 0.1297 2.5299 20 7 3.3033 -0.4146 2.8461 21 6 4.0104 -0.6099 4.0024 22 1 5.0168 -0.9996 3.9607 23 6 3.4337 -0.3070 5.2282 24 7 2.2603 0.2875 5.2744 25 14 4.3229 -0.7432 6.8121 26 1 5.0969 0.4325 7.2851 27 1 3.3302 -1.1310 7.8463 28 1 5.2482 -1.8778 6.5639 29 6 3.5694 -0.6651 1.4163 30 1 -0.3633 -1.0245 0.0804 31 1 -0.3633 0.5818 0.8471 32 1 -0.3634 0.4427 -0.9275 33 1 2.2491 -1.6317 -1.1527 34 1 2.8695 -2.6106 -2.5732 35 1 3.6887 -3.7616 -4.5806 36 1 2.5158 1.0282 -4.8148 37 1 3.8219 1.9892 -7.7590 38 1 3.0353 1.9148 -6.1640 39 1 4.7417 1.4393 -6.3377 40 1 4.1852 -0.0930 -9.0112 41 1 5.2834 -0.5262 -7.6750 42 1 2.8083 -2.1286 -8.4885 43 1 4.4843 -2.5470 -8.9328 44 1 1.6227 -1.7218 1.3623 45 1 1.9614 1.2037 2.3440 46 1 1.1864 -0.1866 3.2230 47 1 1.8572 0.4988 6.1310 48 1 4.0678 -1.6148 1.2220 49 1 4.0371 0.1739 0.9010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969959693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:18 Heat of formation + Delta-G solvation = 1.105480 kcal Electronic energy + Delta-G solvation = -29947.870722 eV Core-core repulsion = 25876.383358 eV Total energy + Delta-G solvation = -4071.487364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.19413 -41.05941 -39.71819 -38.24519 -37.64225 -36.20607 -34.16724 -32.64501 -31.60811 -31.25474 -29.94652 -29.30485 -26.83091 -26.32660 -25.73274 -25.50596 -23.77344 -22.72979 -22.19588 -21.16077 -20.45622 -19.38651 -18.78155 -18.56168 -17.92762 -17.24562 -17.02822 -16.76703 -16.28143 -15.93340 -15.80507 -15.64457 -15.51714 -15.38484 -15.11695 -14.93281 -14.73988 -14.61661 -14.23551 -14.00458 -13.53318 -13.39148 -13.21755 -13.12206 -13.07457 -12.97618 -12.82950 -12.66650 -12.60387 -12.35888 -12.07355 -11.98764 -11.79426 -11.72485 -11.57366 -11.23884 -11.02506 -10.92996 -10.81253 -10.08871 -9.59066 -8.92575 -8.73228 -7.90861 -5.23154 -0.18799 0.24823 1.45948 1.47541 1.57131 1.76626 2.10679 2.21845 2.47934 2.57494 2.85730 3.30449 3.38865 3.44128 3.59007 3.67214 3.83750 3.95188 4.02126 4.06207 4.13889 4.20894 4.28715 4.29933 4.39400 4.45648 4.46286 4.59225 4.63510 4.70104 4.76933 4.78621 4.83793 4.87379 4.87899 4.93564 4.97434 5.06168 5.13660 5.25638 5.28253 5.31905 5.41946 5.53759 5.56726 5.66414 5.76564 5.87274 5.94171 6.30466 6.60003 6.92420 7.24991 7.61227 8.57288 9.26764 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002037 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.869823 B =13739.783647 C =14206.446493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.162 3.838 3 H 0.061 0.939 4 N -0.701 5.701 5 C 0.560 3.440 6 O -0.584 6.584 7 C -0.153 4.153 8 C -0.068 4.068 9 C -0.131 4.131 10 C 0.105 3.895 11 C 0.026 3.974 12 C -0.078 4.078 13 N -0.500 5.500 14 C 0.021 3.979 15 C 0.010 3.990 16 C 0.051 3.949 17 O -0.321 6.321 18 C -0.108 4.108 19 C 0.171 3.829 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.127 3.873 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.413 0.587 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.129 0.871 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.109 0.891 45 H 0.010 0.990 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.064 0.936 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -7.063 -31.147 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 H 0.079 0.921 4 N -0.352 5.352 5 C 0.349 3.651 6 O -0.466 6.466 7 C -0.156 4.156 8 C -0.088 4.088 9 C -0.150 4.150 10 C 0.056 3.944 11 C -0.072 4.072 12 C -0.100 4.100 13 N -0.216 5.216 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.023 4.023 17 O -0.235 6.235 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.002 3.998 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.147 0.853 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.166 0.834 44 H 0.127 0.873 45 H 0.028 0.972 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.260 -6.376 -31.146 31.817 hybrid contribution 0.964 0.388 1.488 1.815 sum 2.224 -5.988 -29.659 30.339 Atomic orbital electron populations 1.22045 0.94016 1.03143 1.01770 1.20776 0.94756 0.95916 0.82850 0.92102 1.45813 1.66231 1.14625 1.08531 1.18445 0.76901 0.86009 0.83712 1.90742 1.52655 1.17447 1.85725 1.19620 1.07362 0.95399 0.93262 1.21279 0.96014 0.92141 0.99323 1.20668 1.02974 1.01611 0.89764 1.19125 0.96765 0.89478 0.88985 1.18890 1.04739 0.92515 0.91088 1.20986 0.98324 1.00438 0.90235 1.58933 1.49027 1.04111 1.09530 1.22630 0.99614 0.86474 1.03738 1.23005 0.94115 0.96099 0.98355 1.23515 1.03958 0.91766 0.83075 1.86198 1.76189 1.46431 1.14677 1.23450 0.95999 1.00474 0.92861 1.22137 0.88225 0.93711 0.91450 1.46492 1.17018 1.72314 1.01210 1.19439 0.97285 1.35769 0.83917 0.89915 1.25653 0.98347 1.01427 1.00721 1.70017 1.18791 1.46991 1.24465 0.85056 0.77258 0.77925 0.79045 1.21751 1.21846 1.19003 1.22680 0.94893 0.98499 0.83734 0.90595 0.91815 0.92992 0.74882 0.82207 0.82114 0.84978 0.87917 0.90848 0.94429 0.85266 0.92537 0.90393 0.83377 0.87300 0.97207 0.93533 0.94219 0.91739 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.43 71.98 0.68 -3.53 16 2 C 0.16 4.99 2.29 44.99 0.10 5.09 16 3 H 0.06 2.25 7.49 -2.39 -0.02 2.23 16 4 N -0.70 -17.75 4.90 -445.64 -2.18 -19.93 16 5 C 0.56 16.23 7.73 86.72 0.67 16.90 16 6 O -0.58 -21.61 16.00 -3.97 -0.06 -21.68 16 7 C -0.15 -3.63 5.87 -20.13 -0.12 -3.75 16 8 C -0.07 -1.21 9.53 22.50 0.21 -0.99 16 9 C -0.13 -2.23 9.91 22.35 0.22 -2.00 16 10 C 0.10 2.03 6.48 22.72 0.15 2.17 16 11 C 0.03 0.53 5.82 38.21 0.22 0.75 16 12 C -0.08 -1.87 8.61 22.71 0.20 -1.68 16 13 N -0.50 -8.19 4.89 -719.23 -3.52 -11.71 16 14 C 0.02 0.30 8.98 127.69 1.15 1.44 16 15 C 0.01 0.10 5.72 86.47 0.50 0.60 16 16 C 0.05 0.49 7.25 72.12 0.52 1.02 16 17 O -0.32 -5.35 10.39 -93.58 -0.97 -6.32 16 18 C -0.11 -3.77 3.35 -10.14 -0.03 -3.80 16 19 C 0.17 8.13 7.02 86.44 0.61 8.74 16 20 N -0.64 -33.40 3.70 -716.11 -2.65 -36.05 16 21 C -0.24 -13.41 10.69 84.03 0.90 -12.51 16 22 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.95 -58.30 11.43 21.65 0.25 -58.06 16 25 Si 0.98 46.13 29.56 68.60 2.03 48.15 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.13 5.01 8.38 86.49 0.72 5.73 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.41 7.81 6.63 -92.70 -0.61 7.20 16 34 H 0.16 1.91 6.40 -2.91 -0.02 1.90 16 35 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.13 3.39 5.56 -2.91 -0.02 3.37 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.21 6.09 -2.39 -0.01 1.19 16 39 H 0.04 0.55 8.14 -2.38 -0.02 0.54 16 40 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 45 H 0.01 0.51 8.04 -2.39 -0.02 0.49 16 46 H 0.05 2.45 7.20 -2.39 -0.02 2.44 16 47 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.03 1.20 8.10 -2.38 -0.02 1.18 16 Total: -1.00 -77.37 394.01 0.40 -76.97 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.35 Total: 17.94 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.16 Total: 10.68 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -8.11 Total: -125.75 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.04 Total: -28.00 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -77.37 0.40 -76.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969959693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.075 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds