Wall clock time and date at job start Wed Apr 1 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21284 * 119.99878 * 2 1 4 4 N 1.34780 * 120.00182 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99956 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.46819 * 180.02562 * 5 4 2 7 7 C 1.38360 * 119.85627 * 89.99806 * 6 5 4 8 8 C 1.37952 * 120.14539 * 179.97438 * 7 6 5 9 9 C 1.39577 * 119.85337 * 0.02562 * 8 7 6 10 10 C 1.47851 * 120.14415 * 179.97438 * 9 8 7 11 11 O 1.21550 * 120.00303 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99739 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99584 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47645 * 325.00135 * 13 12 10 15 15 C 1.52996 * 109.46882 * 85.00727 * 13 12 10 16 16 C 1.53000 * 109.46960 * 204.99961 * 13 12 10 17 17 C 1.53497 * 114.20787 * 180.02562 * 16 13 12 18 18 N 1.47062 * 87.98453 * 87.71861 * 17 16 13 19 19 C 1.36943 * 136.05579 * 207.08745 * 18 17 16 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27778 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.47067 * 87.88602 * 27.34481 * 18 17 16 28 28 C 1.39573 * 119.71211 * 0.26124 * 9 8 7 29 29 C 1.37960 * 119.85304 * 359.46083 * 28 9 8 30 30 H 1.08997 * 109.47241 * 270.00426 * 1 2 3 31 31 H 1.08992 * 109.47007 * 30.00820 * 1 2 3 32 32 H 1.09005 * 109.46564 * 150.00531 * 1 2 3 33 33 H 0.97002 * 119.99555 * 0.02562 * 4 2 1 34 34 H 1.08998 * 109.47466 * 60.00008 * 5 4 2 35 35 H 1.09003 * 109.47172 * 299.99706 * 5 4 2 36 36 H 1.07996 * 119.92788 * 0.02562 * 7 6 5 37 37 H 1.08005 * 120.07472 * 180.02562 * 8 7 6 38 38 H 0.96997 * 120.00244 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.47365 * 179.97438 * 15 13 12 40 40 H 1.09010 * 109.47036 * 299.99304 * 15 13 12 41 41 H 1.08997 * 109.47848 * 59.99342 * 15 13 12 42 42 H 1.09001 * 113.28445 * 46.93871 * 16 13 12 43 43 H 1.09000 * 113.46436 * 332.93489 * 17 16 13 44 44 H 1.08997 * 113.51966 * 202.51274 * 17 16 13 45 45 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 46 46 H 1.08994 * 113.46653 * 87.43736 * 27 18 17 47 47 H 1.08996 * 113.46465 * 217.87717 * 27 18 17 48 48 H 1.08002 * 120.07570 * 179.72428 * 28 9 8 49 49 H 1.07994 * 119.92944 * 180.27961 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1483 -2.5880 0.0010 7 6 4.3783 -3.2371 -1.1991 8 6 4.8386 -4.5376 -1.2061 9 6 5.0718 -5.1986 0.0008 10 6 5.5646 -6.5926 0.0008 11 8 5.7680 -7.1653 -1.0519 12 7 5.7883 -7.2283 1.1680 13 6 6.2761 -8.6097 1.1679 14 1 5.8418 -9.1484 0.3257 15 6 7.8010 -8.6121 1.0432 16 6 5.8703 -9.2939 2.4748 17 6 6.3296 -10.7541 2.5898 18 7 7.5934 -10.2577 3.1548 19 6 8.8888 -10.6982 3.2108 20 1 9.1592 -11.6393 2.7551 21 6 9.8529 -9.9382 3.8587 22 7 9.5232 -8.7917 4.4144 23 14 11.6183 -10.5429 3.9418 24 1 12.3697 -10.0400 2.7637 25 1 12.2552 -10.0417 5.1861 26 1 11.6336 -12.0279 3.9415 27 6 6.8525 -9.0831 3.6388 28 6 4.8320 -4.5401 1.2079 29 6 4.3772 -3.2376 1.2010 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8898 -0.5139 32 1 -0.3632 -0.8901 -0.5138 33 1 1.6959 -2.0073 0.0005 34 1 4.0090 -0.6531 0.8911 35 1 4.0096 -0.6535 -0.8889 36 1 4.1979 -2.7244 -2.1322 37 1 5.0182 -5.0431 -2.1435 38 1 5.6256 -6.7714 2.0080 39 1 8.1640 -9.6398 1.0435 40 1 8.0901 -8.1246 0.1120 41 1 8.2353 -8.0734 1.8853 42 1 4.8255 -9.1316 2.7398 43 1 6.4495 -11.2485 1.6259 44 1 5.7402 -11.3412 3.2940 45 1 10.1970 -8.2605 4.8668 46 1 6.4006 -9.2289 4.6199 47 1 7.4181 -8.1540 3.5686 48 1 5.0062 -5.0475 2.1452 49 1 4.1956 -2.7254 2.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970079989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:35 Heat of formation + Delta-G solvation = 13.522414 kcal Electronic energy + Delta-G solvation = -29329.636625 eV Core-core repulsion = 25258.687700 eV Total energy + Delta-G solvation = -4070.948926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.50419 -39.91504 -39.08694 -38.11920 -35.27358 -34.53039 -32.41923 -32.08041 -31.30596 -30.32273 -29.32496 -27.69879 -26.46791 -24.73698 -24.21330 -22.95223 -22.77909 -21.35712 -21.04838 -20.10844 -18.94328 -17.70936 -17.30409 -16.81013 -16.65252 -16.24621 -15.74210 -15.26421 -15.19007 -15.00043 -14.88306 -14.69754 -14.28562 -13.93939 -13.84550 -13.78449 -13.32858 -13.30995 -13.12999 -12.73577 -12.63149 -12.40814 -12.27175 -11.89178 -11.77272 -11.35426 -11.21802 -11.07930 -10.98420 -10.79565 -10.59386 -10.39866 -10.34732 -9.94178 -9.78594 -9.69953 -9.54822 -9.28875 -9.20801 -9.16971 -8.77189 -8.65986 -6.85520 -5.80279 -3.11472 0.51340 1.07786 2.23525 2.62658 3.08163 3.32802 3.37600 3.43100 3.44133 3.73625 4.17490 4.43547 4.43816 4.44490 4.62918 4.76143 4.77982 4.90612 4.97056 5.04885 5.22495 5.25145 5.27966 5.34242 5.35400 5.41308 5.50620 5.56162 5.69621 5.91972 5.92665 5.96676 6.05148 6.13761 6.16157 6.29370 6.40589 6.45757 6.55378 6.60524 6.68622 6.76874 7.02301 7.05751 7.19812 7.23628 7.47054 7.58996 7.76403 7.79189 7.94459 8.39052 9.01142 9.67845 10.61205 11.36969 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.001906 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.661929 B =14690.182121 C =14994.164823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.158 3.842 6 C -0.094 4.094 7 C -0.109 4.109 8 C -0.064 4.064 9 C -0.116 4.116 10 C 0.552 3.448 11 O -0.541 6.541 12 N -0.710 5.710 13 C 0.175 3.825 14 H 0.077 0.923 15 C -0.148 4.148 16 C -0.162 4.162 17 C 0.127 3.873 18 N -0.604 5.604 19 C -0.213 4.213 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.157 3.843 28 C -0.086 4.086 29 C -0.107 4.107 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.397 0.603 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.253 0.747 46 H 0.023 0.977 47 H 0.076 0.924 48 H 0.132 0.868 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.480 13.811 -7.723 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.380 5.380 5 C 0.035 3.965 6 C -0.095 4.095 7 C -0.128 4.128 8 C -0.082 4.082 9 C -0.120 4.120 10 C 0.339 3.661 11 O -0.420 6.420 12 N -0.360 5.360 13 C 0.072 3.928 14 H 0.095 0.905 15 C -0.205 4.205 16 C -0.182 4.182 17 C 0.000 4.000 18 N -0.330 5.330 19 C -0.340 4.340 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.031 3.969 28 C -0.105 4.105 29 C -0.125 4.125 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.232 0.768 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.095 0.905 48 H 0.150 0.850 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.504 14.137 -8.365 24.005 hybrid contribution 0.708 -0.634 0.816 1.253 sum -16.796 13.503 -7.549 22.835 Atomic orbital electron populations 1.21888 0.91454 1.04977 1.04923 1.20873 0.90698 0.83334 0.75434 1.90744 1.70836 1.31421 1.49551 1.46188 1.06961 1.09037 1.75806 1.20230 0.79989 0.92768 1.03491 1.20003 1.00427 0.95369 0.93696 1.21050 0.99524 0.94548 0.97658 1.21303 0.95028 0.93845 0.98068 1.20195 1.02632 0.94785 0.94345 1.18213 0.77946 0.85694 0.84278 1.90759 1.52574 1.67455 1.31200 1.46114 1.66281 1.15736 1.07890 1.20611 0.95992 0.79475 0.96698 0.90475 1.22168 0.93140 1.04748 1.00492 1.23381 0.98585 0.99119 0.97090 1.22338 0.88266 0.92665 0.96760 1.45647 1.01740 1.21749 1.63829 1.18864 0.81410 1.03627 1.30146 0.90261 1.24720 0.97898 0.97232 1.00305 1.69792 1.32629 1.13299 1.40828 0.86184 0.84839 0.77980 0.77156 1.21524 1.21748 1.20767 1.22210 0.88925 0.94219 0.91505 1.21407 0.96852 0.94741 0.97503 1.21024 0.99293 0.94498 0.97715 0.88730 0.88821 0.90088 0.76177 0.90307 0.90366 0.85278 0.84389 0.76760 0.89530 0.95362 0.90450 0.91270 0.94006 0.94753 0.93742 0.95956 0.90538 0.85001 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.30 36.01 0.37 -0.30 16 2 C 0.51 3.98 7.94 -10.98 -0.09 3.89 16 3 O -0.55 -6.88 17.10 5.55 0.09 -6.79 16 4 N -0.73 -4.47 5.55 -61.47 -0.34 -4.81 16 5 C 0.16 1.14 5.79 -5.19 -0.03 1.11 16 6 C -0.09 -0.72 5.25 -104.53 -0.55 -1.27 16 7 C -0.11 -0.90 9.68 -39.64 -0.38 -1.28 16 8 C -0.06 -0.67 9.60 -39.19 -0.38 -1.05 16 9 C -0.12 -1.38 5.87 -104.97 -0.62 -2.00 16 10 C 0.55 8.43 7.74 -12.33 -0.10 8.33 16 11 O -0.54 -10.12 16.01 5.32 0.09 -10.04 16 12 N -0.71 -10.47 5.03 -54.75 -0.28 -10.74 16 13 C 0.18 3.04 2.76 -67.93 -0.19 2.86 16 14 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.15 -3.04 8.07 37.16 0.30 -2.74 16 16 C -0.16 -2.78 4.24 -89.97 -0.38 -3.16 16 17 C 0.13 2.44 7.85 -8.51 -0.07 2.38 16 18 N -0.60 -14.30 2.18 -184.61 -0.40 -14.70 16 19 C -0.21 -5.64 9.60 -15.06 -0.14 -5.79 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 22 N -0.92 -25.76 11.50 55.49 0.64 -25.12 16 23 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 C 0.16 3.36 6.41 -8.37 -0.05 3.31 16 28 C -0.09 -0.82 9.54 -39.19 -0.37 -1.19 16 29 C -0.11 -0.85 9.68 -39.64 -0.38 -1.23 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.40 1.63 8.46 -40.82 -0.35 1.28 16 34 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 1.51 7.65 -52.48 -0.40 1.11 16 38 H 0.40 4.96 6.64 -40.82 -0.27 4.69 16 39 H 0.09 1.96 5.95 -51.93 -0.31 1.65 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.08 1.80 6.33 -51.93 -0.33 1.47 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 1.79 5.72 -51.93 -0.30 1.49 16 48 H 0.13 1.08 6.41 -52.49 -0.34 0.74 16 49 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -33.80 402.34 -9.61 -43.41 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.29 Total: 4.46 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.15 Total: 1.63 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.38 Total: -55.38 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.18 Total: -16.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.80 -9.61 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970079989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.937 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds