Wall clock time and date at job start Wed Apr 1 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21550 * 119.99957 * 359.97438 * 5 4 2 7 7 C 1.47851 * 119.99739 * 179.97438 * 5 4 2 8 8 C 1.39573 * 120.14313 * 359.71561 * 7 5 4 9 9 C 1.37960 * 119.85304 * 179.74625 * 8 7 5 10 10 C 1.38364 * 120.14048 * 0.53920 * 9 8 7 11 11 C 1.50700 * 119.85290 * 179.76390 * 10 9 8 12 12 C 1.53002 * 109.47169 * 269.97599 * 11 10 9 13 13 C 1.50700 * 109.47169 * 179.97438 * 12 11 10 14 14 N 1.34777 * 119.99579 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99745 * 359.97438 * 13 12 11 16 16 C 1.38360 * 120.29341 * 359.73909 * 10 9 8 17 17 C 1.37952 * 120.14539 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 31 31 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08002 * 120.07570 * 0.02562 * 8 7 5 35 35 H 1.07994 * 119.92944 * 180.27961 * 9 8 7 36 36 H 1.09007 * 109.46879 * 29.97609 * 11 10 9 37 37 H 1.09003 * 109.46891 * 149.97393 * 11 10 9 38 38 H 1.08997 * 109.47008 * 300.00282 * 12 11 10 39 39 H 1.09001 * 109.46739 * 59.99710 * 12 11 10 40 40 H 0.96992 * 120.00149 * 359.97438 * 14 13 12 41 41 H 0.97002 * 119.99339 * 179.97438 * 14 13 12 42 42 H 1.07996 * 119.92788 * 180.02562 * 16 10 9 43 43 H 1.08005 * 120.07472 * 180.02562 * 17 16 10 44 44 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 45 45 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 46 46 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 47 47 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 48 48 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 49 49 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1608 -2.4118 7 6 2.6404 -0.7154 -3.5641 8 6 2.9791 -2.0680 -3.5032 9 6 3.4339 -2.7137 -4.6343 10 6 3.5649 -2.0206 -5.8247 11 6 4.0673 -2.7311 -7.0550 12 6 5.5921 -2.6227 -7.1197 13 6 6.0945 -3.3337 -8.3498 14 7 7.4155 -3.3696 -8.6150 15 8 5.3103 -3.8743 -9.1005 16 6 3.2363 -0.6782 -5.8904 17 6 2.7748 -0.0221 -4.7681 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -4.2157 -0.4976 2.7570 27 1 -4.3342 -2.9151 2.9011 28 1 -3.5585 -1.6236 4.8017 29 6 1.1558 -1.8880 1.7197 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2489 -1.6319 -1.1525 34 1 2.8812 -2.6091 -2.5736 35 1 3.6920 -3.7614 -4.5897 36 1 3.7792 -3.7815 -7.0111 37 1 3.6324 -2.2719 -7.9428 38 1 5.8801 -1.5723 -7.1636 39 1 6.0269 -3.0818 -6.2319 40 1 8.0426 -2.9375 -8.0144 41 1 7.7389 -3.8276 -9.4066 42 1 3.3405 -0.1430 -6.8226 43 1 2.5183 1.0257 -4.8208 44 1 3.1030 -0.9579 1.2064 45 1 1.3912 0.9843 2.4930 46 1 2.2337 -0.3326 3.4151 47 1 -2.0767 -3.5951 1.8014 48 1 1.6858 -2.6121 2.3384 49 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970393096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:27 Heat of formation + Delta-G solvation = 2.512590 kcal Electronic energy + Delta-G solvation = -29282.237678 eV Core-core repulsion = 25210.811331 eV Total energy + Delta-G solvation = -4071.426347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.37253 -39.89544 -39.05782 -38.05814 -34.47365 -34.31317 -34.06464 -32.20546 -31.19882 -30.55507 -29.10518 -27.65889 -25.66485 -24.70272 -24.11313 -22.81115 -22.52504 -21.29940 -20.73072 -19.97516 -18.86673 -17.80824 -17.52307 -17.15480 -16.77248 -16.27131 -15.76141 -15.36430 -15.13336 -14.92124 -14.78886 -14.62990 -14.43899 -14.03448 -13.79001 -13.75021 -13.34744 -13.31303 -13.04034 -12.60543 -12.37885 -12.04469 -11.76355 -11.64810 -11.62386 -11.17775 -11.10687 -11.03785 -10.94773 -10.75109 -10.58047 -10.44168 -10.31636 -10.17363 -9.90777 -9.73219 -9.64764 -9.16550 -9.15382 -8.95541 -8.73966 -8.57736 -6.82751 -5.77443 -3.08653 0.73147 1.21466 2.19430 2.88434 3.11642 3.39958 3.42089 3.44874 3.45145 3.82639 4.28053 4.46259 4.50327 4.54631 4.74044 4.76858 4.80317 4.97257 5.12886 5.18419 5.22523 5.28989 5.32072 5.39291 5.54931 5.57134 5.63458 5.79374 5.83679 5.96663 6.07743 6.15688 6.26150 6.28455 6.33314 6.34304 6.44989 6.50117 6.63709 6.70618 6.74253 6.81641 6.82639 7.06520 7.23431 7.27369 7.50116 7.62853 7.79447 7.84022 7.97237 8.47696 9.03761 9.70494 10.64164 11.39741 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001885 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.386837 B =14849.465497 C =15200.623774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.077 0.923 4 N -0.711 5.711 5 C 0.554 3.446 6 O -0.544 6.544 7 C -0.129 4.129 8 C -0.082 4.082 9 C -0.123 4.123 10 C -0.066 4.066 11 C -0.068 4.068 12 C -0.137 4.137 13 C 0.516 3.484 14 N -0.859 5.859 15 O -0.543 6.543 16 C -0.126 4.126 17 C -0.060 4.060 18 C -0.161 4.161 19 C 0.127 3.873 20 N -0.603 5.603 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.157 3.843 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.397 0.603 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.402 0.598 41 H 0.401 0.599 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.253 0.747 48 H 0.022 0.978 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.378 -0.111 -18.063 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.072 3.928 3 H 0.095 0.905 4 N -0.362 5.362 5 C 0.341 3.659 6 O -0.423 6.423 7 C -0.132 4.132 8 C -0.101 4.101 9 C -0.141 4.141 10 C -0.067 4.067 11 C -0.105 4.105 12 C -0.177 4.177 13 C 0.301 3.699 14 N -0.422 5.422 15 O -0.420 6.420 16 C -0.144 4.144 17 C -0.079 4.079 18 C -0.181 4.181 19 C 0.000 4.000 20 N -0.329 5.329 21 C -0.341 4.341 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.031 3.969 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.230 0.770 41 H 0.231 0.769 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.127 0.338 -18.367 25.808 hybrid contribution -0.268 -0.606 0.605 0.897 sum 17.859 -0.268 -17.763 25.190 Atomic orbital electron populations 1.22166 0.92958 1.04351 1.01056 1.20594 0.95711 0.95153 0.81308 0.90527 1.46105 1.66158 1.13999 1.09890 1.18235 0.77986 0.86574 0.83148 1.90748 1.50833 1.15723 1.84978 1.20103 1.03868 0.94493 0.94769 1.21380 0.96400 0.93422 0.98894 1.20990 1.00898 1.00114 0.92095 1.20021 0.97746 0.93999 0.94915 1.20371 0.92928 1.01656 0.95572 1.21676 0.97449 1.02183 0.96421 1.20782 0.82318 0.79570 0.87215 1.43930 1.08075 1.59836 1.30408 1.90771 1.55361 1.45764 1.50065 1.21013 1.00716 0.94068 0.98559 1.21276 0.95046 1.00496 0.91035 1.23378 0.98325 1.01606 0.94829 1.22339 0.88982 0.95753 0.92967 1.45636 1.04224 1.20018 1.63064 1.18818 0.83201 1.03666 1.28419 0.90328 1.24717 0.98067 0.96518 1.00822 1.69783 1.34160 1.09490 1.43121 0.86262 0.84537 0.76941 0.78415 1.21070 1.21646 1.21314 1.22210 0.89406 0.90672 0.94566 0.95374 0.90468 0.89583 0.76790 0.85278 0.85420 0.89871 0.89943 0.88422 0.88374 0.76954 0.76891 0.85514 0.84673 0.91289 0.94022 0.94788 0.93693 0.95984 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.07 37.16 0.30 -2.81 16 2 C 0.18 3.14 2.76 -67.93 -0.19 2.95 16 3 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.71 -10.96 5.03 -54.75 -0.28 -11.24 16 5 C 0.55 8.88 7.74 -12.33 -0.10 8.79 16 6 O -0.54 -10.57 16.01 5.32 0.09 -10.48 16 7 C -0.13 -1.66 5.87 -104.97 -0.62 -2.28 16 8 C -0.08 -0.86 9.54 -39.19 -0.37 -1.23 16 9 C -0.12 -1.08 9.68 -39.64 -0.38 -1.47 16 10 C -0.07 -0.56 5.14 -104.53 -0.54 -1.10 16 11 C -0.07 -0.48 4.63 -27.88 -0.13 -0.61 16 12 C -0.14 -0.69 5.68 -27.88 -0.16 -0.85 16 13 C 0.52 3.54 8.10 -10.99 -0.09 3.45 16 14 N -0.86 -2.84 8.87 31.22 0.28 -2.56 16 15 O -0.54 -6.27 16.82 5.56 0.09 -6.17 16 16 C -0.13 -1.14 9.68 -39.64 -0.38 -1.53 16 17 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 18 C -0.16 -2.84 4.24 -89.97 -0.38 -3.22 16 19 C 0.13 2.48 7.85 -8.51 -0.07 2.42 16 20 N -0.60 -14.49 2.18 -184.61 -0.40 -14.89 16 21 C -0.21 -5.72 9.60 -15.06 -0.14 -5.86 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.92 -26.02 11.50 55.49 0.64 -25.38 16 25 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.16 3.42 6.41 -8.37 -0.05 3.37 16 30 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.08 1.83 6.33 -51.93 -0.33 1.50 16 32 H 0.09 1.98 5.95 -51.93 -0.31 1.67 16 33 H 0.40 5.23 6.64 -40.82 -0.27 4.96 16 34 H 0.13 1.17 6.41 -52.49 -0.34 0.83 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 37 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.40 0.16 8.83 -40.82 -0.36 -0.20 16 41 H 0.40 1.13 8.93 -40.82 -0.36 0.76 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.14 1.60 7.65 -52.48 -0.40 1.20 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.82 5.72 -51.93 -0.30 1.53 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -34.70 400.71 -9.59 -44.29 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.25 Total: 4.85 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.77 Total: -1.27 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.07 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.18 Total: -16.66 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.70 -9.59 -44.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970393096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.804 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds