Wall clock time and date at job start Wed Apr 1 2020 03:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21550 * 119.99957 * 359.97438 * 5 4 2 7 7 C 1.47851 * 119.99739 * 179.97438 * 5 4 2 8 8 C 1.39573 * 120.14313 * 359.71561 * 7 5 4 9 9 C 1.37960 * 119.85304 * 179.74625 * 8 7 5 10 10 C 1.38364 * 120.14048 * 0.53920 * 9 8 7 11 11 C 1.50700 * 119.85290 * 179.76390 * 10 9 8 12 12 C 1.53002 * 109.47169 * 269.97599 * 11 10 9 13 13 C 1.50700 * 109.47169 * 179.97438 * 12 11 10 14 14 N 1.34777 * 119.99579 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99745 * 359.97438 * 13 12 11 16 16 C 1.38360 * 120.29341 * 359.73909 * 10 9 8 17 17 C 1.37952 * 120.14539 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 31 31 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08002 * 120.07570 * 0.02562 * 8 7 5 35 35 H 1.07994 * 119.92944 * 180.27961 * 9 8 7 36 36 H 1.09007 * 109.46879 * 29.97609 * 11 10 9 37 37 H 1.09003 * 109.46891 * 149.97393 * 11 10 9 38 38 H 1.08997 * 109.47008 * 300.00282 * 12 11 10 39 39 H 1.09001 * 109.46739 * 59.99710 * 12 11 10 40 40 H 0.96992 * 120.00149 * 359.97438 * 14 13 12 41 41 H 0.97002 * 119.99339 * 179.97438 * 14 13 12 42 42 H 1.07996 * 119.92788 * 180.02562 * 16 10 9 43 43 H 1.08005 * 120.07472 * 180.02562 * 17 16 10 44 44 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 45 45 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 46 46 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 47 47 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 48 48 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 49 49 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1608 -2.4118 7 6 2.6404 -0.7154 -3.5641 8 6 2.9791 -2.0680 -3.5032 9 6 3.4339 -2.7137 -4.6343 10 6 3.5649 -2.0206 -5.8247 11 6 4.0673 -2.7311 -7.0550 12 6 5.5921 -2.6227 -7.1197 13 6 6.0945 -3.3337 -8.3498 14 7 7.4155 -3.3696 -8.6150 15 8 5.3103 -3.8743 -9.1005 16 6 3.2363 -0.6782 -5.8904 17 6 2.7748 -0.0221 -4.7681 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -4.2157 -0.4976 2.7570 27 1 -4.3342 -2.9151 2.9011 28 1 -3.5585 -1.6236 4.8017 29 6 1.1558 -1.8880 1.7197 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2489 -1.6319 -1.1525 34 1 2.8812 -2.6091 -2.5736 35 1 3.6920 -3.7614 -4.5897 36 1 3.7792 -3.7815 -7.0111 37 1 3.6324 -2.2719 -7.9428 38 1 5.8801 -1.5723 -7.1636 39 1 6.0269 -3.0818 -6.2319 40 1 8.0426 -2.9375 -8.0144 41 1 7.7389 -3.8276 -9.4066 42 1 3.3405 -0.1430 -6.8226 43 1 2.5183 1.0257 -4.8208 44 1 3.1030 -0.9579 1.2064 45 1 1.3912 0.9843 2.4930 46 1 2.2337 -0.3326 3.4151 47 1 -2.0767 -3.5951 1.8014 48 1 1.6858 -2.6121 2.3384 49 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970393096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:26 Heat of formation + Delta-G solvation = -21.276378 kcal Electronic energy + Delta-G solvation = -29283.269245 eV Core-core repulsion = 25210.811331 eV Total energy + Delta-G solvation = -4072.457914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.47546 -40.66055 -40.24645 -39.25172 -35.92478 -35.01491 -34.53689 -34.13280 -32.11928 -31.52903 -30.27562 -29.51594 -26.54648 -26.36253 -25.73816 -23.77989 -23.53209 -22.60220 -21.34836 -21.00448 -20.30466 -18.85682 -18.46596 -18.17985 -17.72405 -17.30398 -16.83651 -16.60856 -16.50008 -16.05489 -16.02281 -15.68643 -15.57803 -15.45855 -14.84183 -14.53922 -14.47019 -14.31520 -13.93726 -13.84468 -13.75473 -13.48050 -13.01953 -12.88669 -12.75937 -12.73344 -12.53800 -12.41682 -12.39270 -12.21377 -12.03253 -11.75395 -11.68232 -11.48702 -11.08716 -11.01260 -10.82512 -10.70467 -10.58812 -10.10577 -9.91663 -9.65352 -8.76030 -7.83888 -5.13407 -0.13653 0.45384 1.46897 1.48283 1.53508 1.71317 1.86818 2.18035 2.50886 2.68386 2.93128 3.38045 3.56709 3.67183 3.74190 3.84258 3.87936 3.97612 4.03486 4.08248 4.23183 4.39633 4.41999 4.47981 4.53647 4.57869 4.73355 4.75395 4.86437 4.89535 4.90087 4.95854 5.04932 5.11416 5.12898 5.14548 5.24036 5.30811 5.36308 5.43270 5.54173 5.60005 5.62993 5.68251 5.79709 5.94544 5.97655 6.02104 6.53035 6.60646 6.99395 7.24345 7.41824 7.68251 8.69272 9.32710 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001885 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.386837 B =14849.465497 C =15200.623774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.185 3.815 3 H 0.077 0.923 4 N -0.704 5.704 5 C 0.553 3.447 6 O -0.585 6.585 7 C -0.153 4.153 8 C -0.082 4.082 9 C -0.121 4.121 10 C -0.053 4.053 11 C -0.065 4.065 12 C -0.131 4.131 13 C 0.513 3.487 14 N -0.841 5.841 15 O -0.598 6.598 16 C -0.122 4.122 17 C -0.072 4.072 18 C -0.128 4.128 19 C 0.124 3.876 20 N -0.630 5.630 21 C -0.215 4.215 22 H 0.077 0.923 23 C -0.058 4.058 24 N -0.943 5.943 25 Si 0.963 3.037 26 H -0.283 1.283 27 H -0.297 1.297 28 H -0.281 1.281 29 C 0.156 3.844 30 H 0.018 0.982 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.419 0.581 41 H 0.405 0.595 42 H 0.149 0.851 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.245 0.755 48 H 0.019 0.981 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.929 -0.397 -18.699 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.080 3.920 3 H 0.095 0.905 4 N -0.355 5.355 5 C 0.342 3.658 6 O -0.467 6.467 7 C -0.156 4.156 8 C -0.100 4.100 9 C -0.139 4.139 10 C -0.053 4.053 11 C -0.103 4.103 12 C -0.170 4.170 13 C 0.299 3.701 14 N -0.405 5.405 15 O -0.479 6.479 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.002 4.002 20 N -0.357 5.357 21 C -0.343 4.343 22 H 0.095 0.905 23 C -0.252 4.252 24 N -0.592 5.592 25 Si 0.793 3.207 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.207 1.207 29 C 0.031 3.969 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.250 0.750 41 H 0.235 0.765 42 H 0.167 0.833 43 H 0.142 0.858 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.037 0.963 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.762 0.064 -18.980 28.130 hybrid contribution -0.968 -0.496 0.728 1.309 sum 19.794 -0.432 -18.252 26.928 Atomic orbital electron populations 1.21925 0.95607 1.01823 0.99416 1.20322 0.93337 0.95640 0.82661 0.90539 1.45927 1.65854 1.14535 1.09160 1.18766 0.76976 0.86175 0.83900 1.90718 1.52757 1.17606 1.85641 1.19921 1.06410 0.95604 0.93703 1.21524 0.95964 0.92389 1.00136 1.21281 0.99904 1.01244 0.91435 1.20205 0.96190 0.93625 0.95273 1.20333 0.94577 1.00952 0.94428 1.21660 0.95744 1.03333 0.96293 1.21102 0.82850 0.78985 0.87173 1.43814 1.07346 1.58769 1.30554 1.90755 1.56870 1.48343 1.51938 1.21214 0.99795 0.94481 0.98500 1.21310 0.95873 1.00268 0.91607 1.23126 0.99676 0.98480 0.93520 1.22542 0.87405 0.95718 0.94526 1.45893 1.04674 1.21732 1.63358 1.19075 0.84863 1.03199 1.27174 0.90479 1.25359 1.01167 0.96767 1.01872 1.69937 1.34640 1.09976 1.44668 0.85382 0.80922 0.76397 0.78027 1.20909 1.22322 1.20706 1.22182 0.89610 0.91481 0.93663 0.96277 0.93266 0.91832 0.75317 0.84102 0.82923 0.90420 0.90601 0.86496 0.86328 0.75010 0.76466 0.83344 0.85800 0.87211 0.93457 0.92855 0.94581 0.96285 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.07 71.98 0.58 -5.01 16 2 C 0.18 6.48 2.76 44.99 0.12 6.60 16 3 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 4 N -0.70 -21.14 5.03 -445.41 -2.24 -23.38 16 5 C 0.55 17.65 7.74 86.79 0.67 18.32 16 6 O -0.59 -23.15 16.01 -3.87 -0.06 -23.21 16 7 C -0.15 -3.81 5.87 -20.09 -0.12 -3.93 16 8 C -0.08 -1.54 9.54 22.53 0.21 -1.33 16 9 C -0.12 -1.78 9.68 22.23 0.22 -1.56 16 10 C -0.05 -0.75 5.14 -19.81 -0.10 -0.85 16 11 C -0.07 -0.77 4.63 29.85 0.14 -0.64 16 12 C -0.13 -0.90 5.68 29.85 0.17 -0.73 16 13 C 0.51 5.97 8.10 87.66 0.71 6.68 16 14 N -0.84 -3.48 8.87 -173.53 -1.54 -5.02 16 15 O -0.60 -13.32 16.82 -3.03 -0.05 -13.37 16 16 C -0.12 -1.98 9.68 22.23 0.22 -1.76 16 17 C -0.07 -1.61 9.60 22.52 0.22 -1.39 16 18 C -0.13 -4.28 4.24 -10.37 -0.04 -4.32 16 19 C 0.12 4.65 7.85 83.18 0.65 5.31 16 20 N -0.63 -30.22 2.18 -737.98 -1.61 -31.83 16 21 C -0.21 -11.60 9.60 84.03 0.81 -10.80 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 24 N -0.94 -54.67 11.50 21.65 0.25 -54.42 16 25 Si 0.96 45.66 29.55 68.60 2.03 47.68 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 29 C 0.16 6.73 6.41 83.27 0.53 7.26 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 2.40 6.33 -2.39 -0.02 2.38 16 32 H 0.06 3.00 5.95 -2.39 -0.01 2.99 16 33 H 0.41 10.21 6.64 -92.71 -0.62 9.60 16 34 H 0.14 2.24 6.41 -2.91 -0.02 2.22 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.08 1.05 8.04 -2.38 -0.02 1.03 16 37 H 0.08 1.04 8.04 -2.39 -0.02 1.02 16 38 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 40 H 0.42 -1.00 8.83 -92.71 -0.82 -1.81 16 41 H 0.40 1.47 8.93 -92.71 -0.83 0.65 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.12 3.00 7.65 -2.91 -0.02 2.98 16 44 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 45 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 49 H 0.05 2.49 5.72 -2.39 -0.01 2.47 16 Total: -1.00 -78.09 400.71 0.97 -77.13 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -1.26 Total: 17.31 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.45 Total: 9.11 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -5.14 Total: -114.65 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.11 Total: -36.57 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.09 0.97 -77.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970393096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds