Wall clock time and date at job start Wed Apr 1 2020 03:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46502 * 109.47202 * 240.00066 * 2 1 3 5 5 C 1.34775 * 120.00114 * 85.00008 * 4 2 1 6 6 O 1.21591 * 119.99896 * 359.97438 * 5 4 2 7 7 C 1.47524 * 120.00256 * 179.97438 * 5 4 2 8 8 C 1.39748 * 120.76447 * 359.71691 * 7 5 4 9 9 C 1.38900 * 118.87062 * 179.81921 * 8 7 5 10 10 C 1.37842 * 119.43276 * 0.28301 * 9 8 7 11 11 N 1.32755 * 120.42537 * 359.97438 * 10 9 8 12 12 C 1.31848 * 122.58696 * 359.90809 * 11 10 9 13 13 O 1.35430 * 119.89155 * 179.89025 * 12 11 10 14 14 C 1.50800 * 122.25248 * 180.24322 * 10 9 8 15 15 C 1.52693 * 110.59899 * 342.04188 * 14 10 9 16 16 C 1.53324 * 108.42263 * 51.39351 * 15 14 10 17 17 C 1.50549 * 117.76000 * 179.86865 * 9 8 7 18 18 C 1.52998 * 109.47405 * 120.00108 * 2 1 3 19 19 C 1.53951 * 113.73794 * 281.87082 * 18 2 1 20 20 N 1.47813 * 86.03646 * 222.08336 * 19 18 2 21 21 C 1.36941 * 134.45775 * 204.64892 * 20 19 18 22 22 H 1.07998 * 120.00272 * 183.44120 * 21 20 19 23 23 C 1.38811 * 120.00019 * 3.43891 * 21 20 19 24 24 N 1.31619 * 119.99806 * 353.05695 * 23 21 20 25 25 Si 1.86800 * 120.00220 * 173.05931 * 23 21 20 26 26 H 1.48503 * 109.47029 * 94.97836 * 25 23 21 27 27 H 1.48497 * 109.47379 * 214.98431 * 25 23 21 28 28 H 1.48501 * 109.46770 * 334.98134 * 25 23 21 29 29 C 1.47579 * 91.05307 * 24.54765 * 20 19 18 30 30 H 1.09001 * 109.47037 * 175.23399 * 1 2 3 31 31 H 1.08994 * 109.47275 * 55.23575 * 1 2 3 32 32 H 1.08996 * 109.47360 * 295.23237 * 1 2 3 33 33 H 0.97002 * 119.99842 * 264.99697 * 4 2 1 34 34 H 1.08000 * 120.56685 * 0.04460 * 8 7 5 35 35 H 0.96705 * 113.99563 * 270.01443 * 13 12 11 36 36 H 1.09001 * 109.24958 * 102.32942 * 14 10 9 37 37 H 1.09000 * 109.25213 * 221.79207 * 14 10 9 38 38 H 1.08996 * 109.67347 * 171.12853 * 15 14 10 39 39 H 1.09001 * 109.67425 * 291.66604 * 15 14 10 40 40 H 1.09004 * 109.68834 * 49.76332 * 16 15 14 41 41 H 1.09002 * 109.69037 * 170.33461 * 16 15 14 42 42 H 1.09004 * 109.25048 * 42.58764 * 17 9 8 43 43 H 1.08993 * 109.25404 * 283.15256 * 17 9 8 44 44 H 1.08994 * 112.94818 * 53.45710 * 18 2 1 45 45 H 1.08996 * 113.77321 * 336.34202 * 19 18 2 46 46 H 1.09002 * 113.76951 * 107.74965 * 19 18 2 47 47 H 0.96996 * 119.99995 * 180.02562 * 24 23 21 48 48 H 1.08991 * 113.77290 * 221.15202 * 29 20 19 49 49 H 1.09000 * 113.87110 * 89.76814 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8574 1.1614 -2.4119 7 6 2.6394 -0.7135 -3.5615 8 6 2.9824 -2.0674 -3.5153 9 6 3.4381 -2.6838 -4.6737 10 6 3.5465 -1.9484 -5.8345 11 7 3.2185 -0.6621 -5.8486 12 6 2.7788 -0.0296 -4.7785 13 8 2.4619 1.2849 -4.8541 14 6 4.0285 -2.5540 -7.1288 15 6 4.7628 -3.8669 -6.8669 16 6 3.8701 -4.7552 -5.9923 17 6 3.8034 -4.1421 -4.5949 18 6 2.0400 -0.7212 1.2492 19 6 1.9733 0.1326 2.5285 20 7 3.3090 -0.4173 2.8422 21 6 4.0183 -0.6137 3.9970 22 1 5.0277 -0.9951 3.9526 23 6 3.4399 -0.3225 5.2248 24 7 2.2650 0.2687 5.2751 25 14 4.3288 -0.7698 6.8057 26 1 5.0995 0.4039 7.2892 27 1 3.3365 -1.1689 7.8358 28 1 5.2573 -1.8999 6.5487 29 6 3.5701 -0.6719 1.4122 30 1 -0.3633 -1.0241 -0.0854 31 1 -0.3633 0.5859 -0.8442 32 1 -0.3634 0.4381 0.9296 33 1 2.2491 -1.6318 -1.1526 34 1 2.8913 -2.6260 -2.5955 35 1 3.1999 1.8792 -4.6608 36 1 3.1731 -2.7437 -7.7772 37 1 4.7055 -1.8564 -7.6218 38 1 4.9658 -4.3688 -7.8129 39 1 5.7005 -3.6659 -6.3489 40 1 2.8688 -4.8041 -6.4202 41 1 4.2943 -5.7576 -5.9337 42 1 3.0525 -4.6694 -4.0065 43 1 4.7748 -4.2436 -4.1111 44 1 1.6183 -1.7195 1.3655 45 1 1.9734 1.2063 2.3406 46 1 1.1943 -0.1787 3.2244 47 1 1.8610 0.4725 6.1331 48 1 4.0634 -1.6243 1.2184 49 1 4.0404 0.1638 0.8940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970634614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:11 Heat of formation + Delta-G solvation = -0.282137 kcal Electronic energy + Delta-G solvation = -30129.403192 eV Core-core repulsion = 26057.855656 eV Total energy + Delta-G solvation = -4071.547536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.31612 -39.61551 -38.33555 -37.71153 -35.91857 -34.79516 -33.85590 -32.18013 -31.12795 -29.91992 -29.72271 -27.49343 -25.21613 -24.71393 -24.17524 -23.71595 -22.99610 -21.76795 -20.75614 -20.07086 -19.23724 -18.60845 -17.51252 -17.23915 -16.74757 -16.25859 -15.81098 -15.33564 -14.86978 -14.70272 -14.63256 -14.53097 -14.32637 -14.00023 -13.86932 -13.70798 -13.44651 -13.21650 -13.14538 -12.94078 -12.34137 -12.09685 -11.92649 -11.85980 -11.61428 -11.40961 -11.39020 -11.26063 -11.19796 -11.19373 -10.91923 -10.67509 -10.38263 -10.19642 -10.03275 -9.93358 -9.83343 -9.52443 -9.40694 -8.99824 -8.81351 -8.73497 -6.90159 -5.79076 -3.10118 0.33804 0.78264 2.73109 3.09397 3.29334 3.37642 3.42635 3.44923 3.56096 4.08772 4.13196 4.36145 4.40241 4.43486 4.43933 4.64223 4.70695 4.98372 5.04498 5.08539 5.12997 5.18075 5.21772 5.24871 5.37587 5.40164 5.46069 5.52074 5.52344 5.59695 5.63549 5.66700 5.80116 5.84042 5.87501 5.97991 6.06821 6.13285 6.26503 6.33726 6.43849 6.56521 6.60445 6.77994 7.20239 7.33947 7.35417 7.53235 7.55770 7.63424 7.96503 8.27226 9.02877 9.69452 10.58642 11.38542 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002338 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.754612 B =11973.689571 C =13136.475829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.714 5.714 5 C 0.561 3.439 6 O -0.521 6.521 7 C -0.202 4.202 8 C -0.029 4.029 9 C -0.146 4.146 10 C 0.179 3.821 11 N -0.514 5.514 12 C 0.372 3.628 13 O -0.460 6.460 14 C -0.072 4.072 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.126 3.874 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.395 0.605 34 H 0.143 0.857 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.254 0.746 48 H 0.040 0.960 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 -10.080 -25.067 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.107 0.893 4 N -0.365 5.365 5 C 0.346 3.654 6 O -0.398 6.398 7 C -0.208 4.208 8 C -0.056 4.056 9 C -0.148 4.148 10 C 0.044 3.956 11 N -0.233 5.233 12 C 0.190 3.810 13 O -0.267 6.267 14 C -0.110 4.110 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.113 4.113 18 C -0.167 4.167 19 C 0.049 3.951 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.230 0.770 34 H 0.161 0.839 35 H 0.265 0.735 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.138 -8.878 -25.593 27.113 hybrid contribution 0.896 -0.646 1.881 2.181 sum 2.033 -9.524 -23.712 25.634 Atomic orbital electron populations 1.22117 0.95342 1.01709 1.02541 1.21140 0.93873 0.97487 0.82728 0.89291 1.46051 1.66918 1.13878 1.09657 1.17778 0.78375 0.86670 0.82566 1.90814 1.49391 1.15001 1.84563 1.21193 1.08361 0.95764 0.95507 1.21782 0.92484 0.92767 0.98519 1.20407 1.03087 0.97891 0.93462 1.21015 0.92210 0.87533 0.94890 1.67107 1.13935 1.11115 1.31168 1.18986 0.89483 0.86391 0.86153 1.84719 1.38596 1.11400 1.92022 1.20471 1.01073 0.96759 0.92668 1.21592 0.98797 0.94790 1.00648 1.21589 1.00614 0.98993 0.94788 1.20430 1.02557 0.89953 0.98406 1.23844 0.97570 1.00768 0.94537 1.22249 0.89664 0.93904 0.89243 1.46036 1.16398 1.71719 0.99654 1.19018 0.96542 1.37080 0.82546 0.90344 1.24786 0.97263 1.00898 0.97441 1.69821 1.17121 1.45631 1.24145 0.86124 0.78390 0.78067 0.83319 1.21680 1.21559 1.20594 1.22522 0.93064 0.97610 0.86859 0.92823 0.92679 0.90938 0.77034 0.83887 0.73525 0.89378 0.89317 0.90615 0.91198 0.91351 0.90828 0.90143 0.89994 0.89322 0.95363 0.90748 0.93609 0.94195 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.46 37.16 0.35 -1.90 16 2 C 0.15 2.32 2.29 -67.93 -0.16 2.17 16 3 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 4 N -0.71 -9.26 4.90 -54.85 -0.27 -9.53 16 5 C 0.56 8.08 7.74 -12.48 -0.10 7.98 16 6 O -0.52 -9.23 14.88 -16.35 -0.24 -9.47 16 7 C -0.20 -2.48 5.90 -104.78 -0.62 -3.10 16 8 C -0.03 -0.28 9.21 -38.77 -0.36 -0.63 16 9 C -0.15 -1.25 5.74 -104.60 -0.60 -1.85 16 10 C 0.18 1.73 6.63 -82.29 -0.55 1.19 16 11 N -0.51 -6.29 10.18 -9.20 -0.09 -6.38 16 12 C 0.37 4.88 7.78 -16.77 -0.13 4.75 16 13 O -0.46 -6.14 11.69 -39.62 -0.46 -6.60 16 14 C -0.07 -0.48 5.91 -27.99 -0.17 -0.64 16 15 C -0.12 -0.56 5.97 -26.72 -0.16 -0.72 16 16 C -0.12 -0.56 5.98 -26.69 -0.16 -0.72 16 17 C -0.08 -0.43 5.67 -28.09 -0.16 -0.59 16 18 C -0.15 -2.57 3.35 -89.69 -0.30 -2.88 16 19 C 0.18 4.02 6.92 -2.84 -0.02 4.00 16 20 N -0.61 -15.55 3.70 -177.69 -0.66 -16.21 16 21 C -0.22 -6.28 10.69 -15.06 -0.16 -6.44 16 22 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.20 11.42 55.49 0.63 -26.56 16 25 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 C 0.13 2.49 8.38 -2.97 -0.02 2.46 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.04 7.99 -51.93 -0.41 0.63 16 33 H 0.40 4.10 6.71 -40.82 -0.27 3.82 16 34 H 0.14 0.99 6.51 -52.49 -0.34 0.64 16 35 H 0.41 3.80 9.06 45.56 0.41 4.21 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 40 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 43 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 46 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -35.23 395.56 -10.38 -45.61 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.83 Total: 3.40 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.40 Total: 2.76 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.39 Total: -58.68 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.71 Total: -16.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.23 -10.38 -45.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970634614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.329 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds