Wall clock time and date at job start Wed Apr 1 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46502 * 109.47202 * 240.00066 * 2 1 3 5 5 C 1.34775 * 120.00114 * 85.00008 * 4 2 1 6 6 O 1.21591 * 119.99896 * 359.97438 * 5 4 2 7 7 C 1.47524 * 120.00256 * 179.97438 * 5 4 2 8 8 C 1.39748 * 120.76447 * 359.71691 * 7 5 4 9 9 C 1.38900 * 118.87062 * 179.81921 * 8 7 5 10 10 C 1.37842 * 119.43276 * 0.28301 * 9 8 7 11 11 N 1.32755 * 120.42537 * 359.97438 * 10 9 8 12 12 C 1.31848 * 122.58696 * 359.90809 * 11 10 9 13 13 O 1.35430 * 119.89155 * 179.89025 * 12 11 10 14 14 C 1.50800 * 122.25248 * 180.24322 * 10 9 8 15 15 C 1.52693 * 110.59899 * 342.04188 * 14 10 9 16 16 C 1.53324 * 108.42263 * 51.39351 * 15 14 10 17 17 C 1.50549 * 117.76000 * 179.86865 * 9 8 7 18 18 C 1.52998 * 109.47405 * 120.00108 * 2 1 3 19 19 C 1.53951 * 113.73794 * 281.87082 * 18 2 1 20 20 N 1.47813 * 86.03646 * 222.08336 * 19 18 2 21 21 C 1.36941 * 134.45775 * 204.64892 * 20 19 18 22 22 H 1.07998 * 120.00272 * 183.44120 * 21 20 19 23 23 C 1.38811 * 120.00019 * 3.43891 * 21 20 19 24 24 N 1.31619 * 119.99806 * 353.05695 * 23 21 20 25 25 Si 1.86800 * 120.00220 * 173.05931 * 23 21 20 26 26 H 1.48503 * 109.47029 * 94.97836 * 25 23 21 27 27 H 1.48497 * 109.47379 * 214.98431 * 25 23 21 28 28 H 1.48501 * 109.46770 * 334.98134 * 25 23 21 29 29 C 1.47579 * 91.05307 * 24.54765 * 20 19 18 30 30 H 1.09001 * 109.47037 * 175.23399 * 1 2 3 31 31 H 1.08994 * 109.47275 * 55.23575 * 1 2 3 32 32 H 1.08996 * 109.47360 * 295.23237 * 1 2 3 33 33 H 0.97002 * 119.99842 * 264.99697 * 4 2 1 34 34 H 1.08000 * 120.56685 * 0.04460 * 8 7 5 35 35 H 0.96705 * 113.99563 * 270.01443 * 13 12 11 36 36 H 1.09001 * 109.24958 * 102.32942 * 14 10 9 37 37 H 1.09000 * 109.25213 * 221.79207 * 14 10 9 38 38 H 1.08996 * 109.67347 * 171.12853 * 15 14 10 39 39 H 1.09001 * 109.67425 * 291.66604 * 15 14 10 40 40 H 1.09004 * 109.68834 * 49.76332 * 16 15 14 41 41 H 1.09002 * 109.69037 * 170.33461 * 16 15 14 42 42 H 1.09004 * 109.25048 * 42.58764 * 17 9 8 43 43 H 1.08993 * 109.25404 * 283.15256 * 17 9 8 44 44 H 1.08994 * 112.94818 * 53.45710 * 18 2 1 45 45 H 1.08996 * 113.77321 * 336.34202 * 19 18 2 46 46 H 1.09002 * 113.76951 * 107.74965 * 19 18 2 47 47 H 0.96996 * 119.99995 * 180.02562 * 24 23 21 48 48 H 1.08991 * 113.77290 * 221.15202 * 29 20 19 49 49 H 1.09000 * 113.87110 * 89.76814 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8574 1.1614 -2.4119 7 6 2.6394 -0.7135 -3.5615 8 6 2.9824 -2.0674 -3.5153 9 6 3.4381 -2.6838 -4.6737 10 6 3.5465 -1.9484 -5.8345 11 7 3.2185 -0.6621 -5.8486 12 6 2.7788 -0.0296 -4.7785 13 8 2.4619 1.2849 -4.8541 14 6 4.0285 -2.5540 -7.1288 15 6 4.7628 -3.8669 -6.8669 16 6 3.8701 -4.7552 -5.9923 17 6 3.8034 -4.1421 -4.5949 18 6 2.0400 -0.7212 1.2492 19 6 1.9733 0.1326 2.5285 20 7 3.3090 -0.4173 2.8422 21 6 4.0183 -0.6137 3.9970 22 1 5.0277 -0.9951 3.9526 23 6 3.4399 -0.3225 5.2248 24 7 2.2650 0.2687 5.2751 25 14 4.3288 -0.7698 6.8057 26 1 5.0995 0.4039 7.2892 27 1 3.3365 -1.1689 7.8358 28 1 5.2573 -1.8999 6.5487 29 6 3.5701 -0.6719 1.4122 30 1 -0.3633 -1.0241 -0.0854 31 1 -0.3633 0.5859 -0.8442 32 1 -0.3634 0.4381 0.9296 33 1 2.2491 -1.6318 -1.1526 34 1 2.8913 -2.6260 -2.5955 35 1 3.1999 1.8792 -4.6608 36 1 3.1731 -2.7437 -7.7772 37 1 4.7055 -1.8564 -7.6218 38 1 4.9658 -4.3688 -7.8129 39 1 5.7005 -3.6659 -6.3489 40 1 2.8688 -4.8041 -6.4202 41 1 4.2943 -5.7576 -5.9337 42 1 3.0525 -4.6694 -4.0065 43 1 4.7748 -4.2436 -4.1111 44 1 1.6183 -1.7195 1.3655 45 1 1.9734 1.2063 2.3406 46 1 1.1943 -0.1787 3.2244 47 1 1.8610 0.4725 6.1331 48 1 4.0634 -1.6243 1.2184 49 1 4.0404 0.1638 0.8940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970634614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:09 Heat of formation + Delta-G solvation = -25.294589 kcal Electronic energy + Delta-G solvation = -30130.487813 eV Core-core repulsion = 26057.855656 eV Total energy + Delta-G solvation = -4072.632157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.14989 -40.79080 -39.62552 -38.77534 -36.59544 -36.15359 -34.70508 -34.05905 -32.18561 -30.77086 -30.45595 -29.32023 -26.64675 -25.91622 -25.48396 -24.64429 -23.70920 -22.97067 -21.82498 -21.10233 -20.55555 -19.52696 -18.82912 -18.37851 -18.12402 -17.10785 -17.03079 -16.76566 -16.08230 -15.84839 -15.76583 -15.60418 -15.19922 -15.11072 -14.77882 -14.75366 -14.41702 -14.24541 -14.05123 -13.85496 -13.52245 -13.42750 -13.24531 -13.09233 -12.99449 -12.76956 -12.68062 -12.50489 -12.35811 -12.05687 -11.80655 -11.78501 -11.70203 -11.63364 -11.55043 -11.25716 -11.07544 -10.82124 -10.81130 -10.40676 -10.10891 -9.64757 -8.93159 -7.91507 -5.23882 -0.50499 0.01680 1.45844 1.47216 1.56755 1.76664 2.01292 2.42584 2.47332 2.69346 3.29856 3.35306 3.37715 3.53440 3.60323 3.72572 3.81217 3.95590 4.02049 4.08382 4.12155 4.26279 4.39118 4.44095 4.48916 4.56338 4.63563 4.66139 4.72487 4.76867 4.81607 4.86072 4.87066 4.95114 5.00727 5.07618 5.08353 5.20159 5.24861 5.28509 5.29673 5.32115 5.48432 5.50346 5.53481 5.54831 5.64923 5.93593 6.47233 6.56189 6.80627 6.91618 7.19595 7.60763 8.56509 9.26021 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002338 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.754612 B =11973.689571 C =13136.475829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.062 0.938 4 N -0.701 5.701 5 C 0.562 3.438 6 O -0.562 6.562 7 C -0.218 4.218 8 C -0.022 4.022 9 C -0.140 4.140 10 C 0.171 3.829 11 N -0.536 5.536 12 C 0.351 3.649 13 O -0.480 6.480 14 C -0.073 4.073 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.108 4.108 19 C 0.169 3.831 20 N -0.643 5.643 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.978 3.022 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.128 3.872 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.412 0.588 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.010 0.990 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.065 0.935 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -13.528 -26.202 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.080 0.920 4 N -0.353 5.353 5 C 0.349 3.651 6 O -0.441 6.441 7 C -0.225 4.225 8 C -0.048 4.048 9 C -0.142 4.142 10 C 0.036 3.964 11 N -0.256 5.256 12 C 0.169 3.831 13 O -0.289 6.289 14 C -0.110 4.110 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.189 1.189 29 C 0.003 3.997 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.249 0.751 34 H 0.190 0.810 35 H 0.276 0.724 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.028 0.972 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.269 -12.370 -26.766 29.574 hybrid contribution 0.611 0.418 2.112 2.239 sum 2.880 -11.952 -24.654 27.549 Atomic orbital electron populations 1.22051 0.94180 1.02944 1.01929 1.20773 0.94624 0.95984 0.82721 0.91967 1.45781 1.66524 1.14494 1.08464 1.18074 0.77563 0.86215 0.83203 1.90794 1.51226 1.16884 1.85217 1.21005 1.10251 0.97037 0.94165 1.22109 0.91164 0.91515 1.00021 1.20786 1.01472 0.99425 0.92510 1.21658 0.91282 0.86861 0.96634 1.67136 1.14778 1.12574 1.31081 1.19182 0.90634 0.86319 0.86937 1.84669 1.39781 1.12271 1.92208 1.20596 1.01426 0.97716 0.91288 1.21601 0.98423 0.93647 1.01700 1.21616 1.00640 0.99694 0.93941 1.20564 1.03540 0.87702 0.99573 1.23438 0.96078 1.00461 0.92764 1.22156 0.88325 0.93673 0.91523 1.46478 1.17273 1.71960 1.01257 1.19435 0.96964 1.36148 0.83889 0.89867 1.25644 0.98273 1.01447 1.00689 1.70012 1.18727 1.47129 1.24370 0.85071 0.77268 0.77948 0.79087 1.21801 1.21886 1.18936 1.22674 0.94756 0.98540 0.83742 0.90589 0.93305 0.91611 0.75065 0.81042 0.72438 0.88799 0.89526 0.88888 0.91213 0.91511 0.89031 0.88623 0.88800 0.87299 0.97235 0.93516 0.94224 0.91640 0.95214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.46 71.98 0.68 -3.52 16 2 C 0.16 4.90 2.29 44.99 0.10 5.00 16 3 H 0.06 2.24 7.48 -2.39 -0.02 2.22 16 4 N -0.70 -16.95 4.90 -445.72 -2.18 -19.14 16 5 C 0.56 15.96 7.74 86.69 0.67 16.63 16 6 O -0.56 -20.43 14.88 16.69 0.25 -20.18 16 7 C -0.22 -5.19 5.90 -19.96 -0.12 -5.31 16 8 C -0.02 -0.36 9.21 22.79 0.21 -0.15 16 9 C -0.14 -2.01 5.74 -19.85 -0.11 -2.13 16 10 C 0.17 3.05 6.63 42.36 0.28 3.33 16 11 N -0.54 -13.03 10.18 -296.24 -3.02 -16.05 16 12 C 0.35 9.33 7.78 85.19 0.66 10.00 16 13 O -0.48 -13.51 11.69 -66.56 -0.78 -14.28 16 14 C -0.07 -0.83 5.91 29.78 0.18 -0.65 16 15 C -0.12 -0.73 5.97 30.60 0.18 -0.54 16 16 C -0.12 -0.66 5.98 30.62 0.18 -0.47 16 17 C -0.08 -0.56 5.67 29.72 0.17 -0.39 16 18 C -0.11 -3.63 3.35 -10.13 -0.03 -3.66 16 19 C 0.17 7.91 6.92 86.44 0.60 8.51 16 20 N -0.64 -32.65 3.70 -716.08 -2.65 -35.31 16 21 C -0.24 -13.20 10.69 84.03 0.90 -12.30 16 22 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.95 -57.70 11.42 21.65 0.25 -57.45 16 25 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 29 C 0.13 4.86 8.38 86.49 0.72 5.59 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.89 7.99 -2.39 -0.02 1.87 16 33 H 0.41 7.15 6.71 -92.71 -0.62 6.53 16 34 H 0.17 1.65 6.51 -2.91 -0.02 1.63 16 35 H 0.41 8.59 9.06 -74.05 -0.67 7.92 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.07 0.46 8.10 -2.39 -0.02 0.44 16 40 H 0.07 0.41 8.10 -2.38 -0.02 0.39 16 41 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.10 0.47 8.13 -2.38 -0.02 0.45 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.11 3.31 8.14 -2.39 -0.02 3.30 16 45 H 0.01 0.49 8.03 -2.39 -0.02 0.47 16 46 H 0.05 2.43 7.17 -2.39 -0.02 2.41 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -78.83 395.56 -0.68 -79.51 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.31 Total: 18.84 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.74 Total: 16.54 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -7.61 Total: -127.94 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.53 Total: -34.47 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.83 -0.68 -79.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970634614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.210 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds