Wall clock time and date at job start Wed Apr 1 2020 03:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21517 * 119.99827 * 0.02562 * 5 4 2 7 7 C 1.48165 * 120.00119 * 179.97438 * 5 4 2 8 8 C 1.39961 * 120.88964 * 0.02562 * 7 5 4 9 9 C 1.37980 * 119.13574 * 180.02562 * 8 7 5 10 10 N 1.31909 * 120.97224 * 359.97438 * 9 8 7 11 11 C 1.32174 * 121.97531 * 0.02562 * 10 9 8 12 12 O 1.35682 * 119.62320 * 180.02562 * 11 10 9 13 13 C 1.42895 * 117.00145 * 0.02562 * 12 11 10 14 14 C 1.53781 * 113.61477 * 247.49272 * 13 12 11 15 15 C 1.53783 * 87.08459 * 220.01877 * 14 13 12 16 16 C 1.53787 * 87.07856 * 25.43444 * 15 14 13 17 17 C 1.38891 * 120.75161 * 359.72609 * 11 10 9 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36933 * 136.05439 * 207.08381 * 20 19 18 22 22 H 1.07997 * 120.00623 * 7.51587 * 21 20 19 23 23 C 1.38811 * 119.99801 * 187.50516 * 21 20 19 24 24 N 1.31620 * 120.00313 * 174.40470 * 23 21 20 25 25 Si 1.86807 * 120.00107 * 354.40682 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95313 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95489 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95521 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34485 * 20 19 18 30 30 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.08000 * 120.43637 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.51294 * 179.97438 * 9 8 7 36 36 H 1.09002 * 112.85005 * 18.80230 * 13 12 11 37 37 H 1.09007 * 113.61507 * 334.56940 * 14 13 12 38 38 H 1.09003 * 113.61075 * 105.47079 * 14 13 12 39 39 H 1.08998 * 113.61255 * 270.88568 * 15 14 13 40 40 H 1.08993 * 113.61047 * 139.97962 * 15 14 13 41 41 H 1.09003 * 113.61118 * 220.01898 * 16 15 14 42 42 H 1.08996 * 113.69008 * 89.12353 * 16 15 14 43 43 H 1.07998 * 120.53090 * 180.28515 * 17 11 10 44 44 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 45 45 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 46 46 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 47 47 H 0.97005 * 119.99470 * 355.01014 * 24 23 21 48 48 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 49 49 H 1.08999 * 113.46704 * 217.87918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1607 2.4117 7 6 2.6405 -0.7168 3.5670 8 6 2.9786 -2.0743 3.5253 9 6 3.4338 -2.6888 4.6738 10 7 3.5535 -2.0160 5.8020 11 6 3.2461 -0.7333 5.8879 12 8 3.3879 -0.0876 7.0728 13 6 3.8726 -0.8555 8.1762 14 6 2.8292 -1.0655 9.2861 15 6 3.9710 -0.8458 10.2926 16 6 4.6755 -0.0302 9.1956 17 6 2.7853 -0.0375 4.7777 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 0.5841 0.8456 31 1 -0.3633 0.4403 -0.9286 32 1 -0.3633 -1.0243 0.0831 33 1 2.2491 -1.6318 1.1526 34 1 2.8837 -2.6338 2.6064 35 1 3.6961 -3.7362 4.6485 36 1 4.3730 -1.7729 7.8661 37 1 2.0636 -0.2902 9.3182 38 1 2.4140 -2.0731 9.3100 39 1 4.4975 -1.7613 10.5622 40 1 3.6806 -0.2523 11.1595 41 1 5.7508 -0.2019 9.1465 42 1 4.4157 1.0284 9.2019 43 1 2.5396 1.0116 4.8509 44 1 1.5924 -1.7045 -1.3948 45 1 4.0440 -1.6468 -1.1853 46 1 4.0424 0.1473 -0.9096 47 1 5.2095 -0.7874 -6.2427 48 1 2.1518 1.2215 -2.2980 49 1 1.2745 -0.0729 -3.2204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970663343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:44 Heat of formation + Delta-G solvation = 49.859657 kcal Electronic energy + Delta-G solvation = -29312.451902 eV Core-core repulsion = 25243.078677 eV Total energy + Delta-G solvation = -4069.373225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.24516 -40.15008 -39.25419 -38.46012 -36.75657 -35.18792 -33.16806 -32.38224 -31.11106 -30.31394 -27.85747 -26.23552 -26.15264 -25.40351 -24.78650 -23.67389 -23.57568 -21.37552 -20.70086 -20.07065 -19.74069 -18.88487 -17.71347 -17.54091 -16.82175 -16.29206 -15.99706 -15.96849 -15.53908 -15.41550 -15.12945 -15.00325 -14.59741 -14.21474 -13.99643 -13.76372 -13.50551 -13.29736 -13.02494 -12.94559 -12.86226 -12.40041 -12.29931 -12.02743 -11.95715 -11.83371 -11.75774 -11.33052 -11.12237 -10.95543 -10.77417 -10.73183 -10.39811 -10.38035 -10.25610 -10.21245 -9.90275 -9.26517 -9.18810 -9.05979 -8.92648 -8.87975 -7.19272 -6.31660 -3.25944 0.37803 0.77404 2.52831 2.68005 3.02115 3.38708 3.43343 3.50025 3.63678 3.86576 4.07494 4.09105 4.26857 4.36096 4.43278 4.57744 4.58142 4.59931 4.68249 4.74178 4.90681 5.02378 5.09582 5.21051 5.26279 5.30401 5.35052 5.38486 5.40993 5.45290 5.45783 5.49376 5.59974 5.68013 5.70428 5.75100 5.81501 5.98906 6.03601 6.10811 6.19081 6.21595 6.27197 6.32482 6.46282 6.86354 6.90878 7.08467 7.34214 7.41734 8.01114 8.21256 8.95065 9.47560 10.33693 11.18164 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.001862 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.342182 B =15030.071053 C =15425.709264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.093 0.907 4 N -0.708 5.708 5 C 0.558 3.442 6 O -0.527 6.527 7 C -0.048 4.048 8 C -0.182 4.182 9 C 0.139 3.861 10 N -0.530 5.530 11 C 0.321 3.679 12 O -0.291 6.291 13 C 0.060 3.940 14 C -0.152 4.152 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.135 4.135 18 C -0.142 4.142 19 C 0.129 3.871 20 N -0.628 5.628 21 C -0.305 4.305 22 H 0.082 0.918 23 C -0.025 4.025 24 N -0.933 5.933 25 Si 1.069 2.931 26 H -0.294 1.294 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.109 3.891 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.154 0.846 44 H 0.100 0.900 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.261 0.739 48 H 0.047 0.953 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -4.779 31.671 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.359 5.359 5 C 0.343 3.657 6 O -0.404 6.404 7 C -0.058 4.058 8 C -0.203 4.203 9 C -0.016 4.016 10 N -0.254 5.254 11 C 0.142 3.858 12 O -0.198 6.198 13 C 0.004 3.996 14 C -0.190 4.190 15 C -0.176 4.176 16 C -0.175 4.175 17 C -0.157 4.157 18 C -0.162 4.162 19 C 0.002 3.998 20 N -0.356 5.356 21 C -0.431 4.431 22 H 0.100 0.900 23 C -0.224 4.224 24 N -0.575 5.575 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.213 1.213 29 C -0.017 4.017 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.172 0.828 44 H 0.118 0.882 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.574 -3.396 31.200 31.876 hybrid contribution 1.102 -0.984 0.352 1.519 sum -4.472 -4.380 31.553 32.168 Atomic orbital electron populations 1.22144 0.94993 1.02108 1.02656 1.21098 0.94088 0.97547 0.82575 0.88943 1.45978 1.66298 1.14203 1.09382 1.18058 0.78244 0.86503 0.82907 1.90795 1.49594 1.15215 1.84749 1.20193 0.97868 0.93907 0.93876 1.22188 1.02868 0.94412 1.00849 1.22373 0.93248 0.99663 0.86309 1.67083 1.20432 1.07931 1.29965 1.19654 0.91834 0.87819 0.86481 1.86369 1.79633 1.37819 1.15972 1.24220 0.96475 0.96418 0.82522 1.23453 0.97636 1.02895 0.94995 1.22629 0.97477 1.00695 0.96840 1.23281 0.99774 1.00473 0.93966 1.21145 1.02374 1.02424 0.89725 1.23613 0.98572 1.00454 0.93596 1.22308 0.92429 0.98526 0.86490 1.45960 1.19301 1.69226 1.01073 1.20150 1.08531 1.30919 0.83540 0.89987 1.25742 1.05682 0.99780 0.91164 1.70921 1.12011 1.46234 1.28353 0.83733 0.75064 0.76200 0.74848 1.22168 1.22021 1.21289 1.22738 0.90483 0.95740 0.92757 0.92335 0.91048 0.92414 0.76392 0.83869 0.81635 0.86465 0.89175 0.90784 0.89636 0.90364 0.90533 0.88926 0.82836 0.88174 0.93864 0.94552 0.92951 0.93529 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 2.02 2.35 -67.93 -0.16 1.86 16 3 H 0.09 1.43 7.41 -51.93 -0.38 1.04 16 4 N -0.71 -8.02 4.90 -54.65 -0.27 -8.29 16 5 C 0.56 7.16 7.76 -12.18 -0.09 7.07 16 6 O -0.53 -8.60 16.10 5.35 0.09 -8.52 16 7 C -0.05 -0.52 5.91 -104.68 -0.62 -1.13 16 8 C -0.18 -1.48 9.61 -39.03 -0.38 -1.85 16 9 C 0.14 1.10 11.17 -17.61 -0.20 0.90 16 10 N -0.53 -5.27 8.56 -13.38 -0.11 -5.38 16 11 C 0.32 3.52 7.49 -17.16 -0.13 3.39 16 12 O -0.29 -3.08 10.12 -18.75 -0.19 -3.27 16 13 C 0.06 0.49 4.18 -25.92 -0.11 0.38 16 14 C -0.15 -1.00 7.91 -25.92 -0.21 -1.21 16 15 C -0.14 -0.70 8.08 -25.91 -0.21 -0.91 16 16 C -0.14 -0.87 7.91 -25.91 -0.21 -1.07 16 17 C -0.14 -1.54 9.61 -38.84 -0.37 -1.91 16 18 C -0.14 -2.23 3.52 -89.96 -0.32 -2.55 16 19 C 0.13 2.42 8.12 -8.49 -0.07 2.35 16 20 N -0.63 -15.19 3.69 -184.56 -0.68 -15.87 16 21 C -0.31 -8.78 11.08 -15.06 -0.17 -8.94 16 22 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 23 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 24 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16 25 Si 1.07 26.62 25.16 -169.99 -4.28 22.34 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -6.78 6.51 56.52 0.37 -6.41 16 28 H -0.29 -6.66 6.21 56.52 0.35 -6.31 16 29 C 0.11 2.21 5.27 -8.36 -0.04 2.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 3.50 6.74 -40.82 -0.28 3.22 16 34 H 0.14 0.79 6.53 -52.49 -0.34 0.44 16 35 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.98 6.87 -51.93 -0.36 0.62 16 37 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.15 1.79 7.74 -52.49 -0.41 1.38 16 44 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 47 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 48 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 49 H 0.06 1.15 4.72 -51.93 -0.25 0.91 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -34.92 397.04 -9.27 -44.19 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.55 Total: 1.37 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.01 Total: -3.85 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.30 Total: -58.26 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.10 Total: -11.78 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.28 Total: 22.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.92 -9.27 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970663343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.052 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds