Wall clock time and date at job start Wed Apr 1 2020 03:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21517 * 119.99827 * 0.02562 * 5 4 2 7 7 C 1.48165 * 120.00119 * 179.97438 * 5 4 2 8 8 C 1.39961 * 120.88964 * 0.02562 * 7 5 4 9 9 C 1.37980 * 119.13574 * 180.02562 * 8 7 5 10 10 N 1.31909 * 120.97224 * 359.97438 * 9 8 7 11 11 C 1.32174 * 121.97531 * 0.02562 * 10 9 8 12 12 O 1.35682 * 119.62320 * 180.02562 * 11 10 9 13 13 C 1.42895 * 117.00145 * 0.02562 * 12 11 10 14 14 C 1.53781 * 113.61477 * 247.49272 * 13 12 11 15 15 C 1.53783 * 87.08459 * 220.01877 * 14 13 12 16 16 C 1.53787 * 87.07856 * 25.43444 * 15 14 13 17 17 C 1.38891 * 120.75161 * 359.72609 * 11 10 9 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36933 * 136.05439 * 207.08381 * 20 19 18 22 22 H 1.07997 * 120.00623 * 7.51587 * 21 20 19 23 23 C 1.38811 * 119.99801 * 187.50516 * 21 20 19 24 24 N 1.31620 * 120.00313 * 174.40470 * 23 21 20 25 25 Si 1.86807 * 120.00107 * 354.40682 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95313 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95489 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95521 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34485 * 20 19 18 30 30 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.08000 * 120.43637 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.51294 * 179.97438 * 9 8 7 36 36 H 1.09002 * 112.85005 * 18.80230 * 13 12 11 37 37 H 1.09007 * 113.61507 * 334.56940 * 14 13 12 38 38 H 1.09003 * 113.61075 * 105.47079 * 14 13 12 39 39 H 1.08998 * 113.61255 * 270.88568 * 15 14 13 40 40 H 1.08993 * 113.61047 * 139.97962 * 15 14 13 41 41 H 1.09003 * 113.61118 * 220.01898 * 16 15 14 42 42 H 1.08996 * 113.69008 * 89.12353 * 16 15 14 43 43 H 1.07998 * 120.53090 * 180.28515 * 17 11 10 44 44 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 45 45 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 46 46 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 47 47 H 0.97005 * 119.99470 * 355.01014 * 24 23 21 48 48 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 49 49 H 1.08999 * 113.46704 * 217.87918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1607 2.4117 7 6 2.6405 -0.7168 3.5670 8 6 2.9786 -2.0743 3.5253 9 6 3.4338 -2.6888 4.6738 10 7 3.5535 -2.0160 5.8020 11 6 3.2461 -0.7333 5.8879 12 8 3.3879 -0.0876 7.0728 13 6 3.8726 -0.8555 8.1762 14 6 2.8292 -1.0655 9.2861 15 6 3.9710 -0.8458 10.2926 16 6 4.6755 -0.0302 9.1956 17 6 2.7853 -0.0375 4.7777 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 0.5841 0.8456 31 1 -0.3633 0.4403 -0.9286 32 1 -0.3633 -1.0243 0.0831 33 1 2.2491 -1.6318 1.1526 34 1 2.8837 -2.6338 2.6064 35 1 3.6961 -3.7362 4.6485 36 1 4.3730 -1.7729 7.8661 37 1 2.0636 -0.2902 9.3182 38 1 2.4140 -2.0731 9.3100 39 1 4.4975 -1.7613 10.5622 40 1 3.6806 -0.2523 11.1595 41 1 5.7508 -0.2019 9.1465 42 1 4.4157 1.0284 9.2019 43 1 2.5396 1.0116 4.8509 44 1 1.5924 -1.7045 -1.3948 45 1 4.0440 -1.6468 -1.1853 46 1 4.0424 0.1473 -0.9096 47 1 5.2095 -0.7874 -6.2427 48 1 2.1518 1.2215 -2.2980 49 1 1.2745 -0.0729 -3.2204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970663343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:43 Heat of formation + Delta-G solvation = 24.790331 kcal Electronic energy + Delta-G solvation = -29313.538989 eV Core-core repulsion = 25243.078677 eV Total energy + Delta-G solvation = -4070.460312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02064 -41.15200 -40.25228 -39.56983 -37.39755 -36.41737 -34.56980 -33.90516 -32.08378 -31.21297 -29.57846 -27.10971 -26.74540 -26.65438 -25.79380 -24.90252 -24.37401 -22.65880 -21.72667 -21.25745 -20.58704 -19.84945 -19.54831 -18.47791 -17.78346 -17.31656 -16.92210 -16.80294 -16.71867 -16.16376 -16.11146 -15.90154 -15.69688 -15.61564 -15.13891 -15.05864 -14.88238 -14.50736 -14.15115 -13.68009 -13.47709 -13.44951 -13.35891 -13.12857 -13.07502 -12.99386 -12.61617 -12.47968 -12.35564 -12.25394 -12.03209 -11.69038 -11.55009 -11.36577 -11.26925 -11.24413 -11.08395 -11.06931 -10.85455 -10.66638 -10.17211 -9.57885 -9.23097 -8.61779 -5.48225 -0.42661 0.06985 1.39178 1.49953 1.67409 1.73490 1.76868 2.16391 2.55130 2.73540 2.97445 3.18938 3.21061 3.37707 3.56739 3.58413 3.61112 3.81631 3.86821 3.87120 3.89693 3.99735 4.08046 4.18967 4.28836 4.47246 4.53160 4.58206 4.61990 4.66134 4.69395 4.74635 4.75285 4.77264 4.79103 4.85567 4.95582 4.96104 5.01145 5.04090 5.09713 5.19530 5.21405 5.30297 5.38922 5.45397 5.48924 5.94787 6.22374 6.43043 6.69306 6.70993 7.07221 7.32316 8.26979 8.89646 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.001862 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.342182 B =15030.071053 C =15425.709264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.071 0.929 4 N -0.694 5.694 5 C 0.559 3.441 6 O -0.569 6.569 7 C -0.058 4.058 8 C -0.169 4.169 9 C 0.143 3.857 10 N -0.536 5.536 11 C 0.310 3.690 12 O -0.308 6.308 13 C 0.047 3.953 14 C -0.152 4.152 15 C -0.127 4.127 16 C -0.138 4.138 17 C -0.155 4.155 18 C -0.103 4.103 19 C 0.126 3.874 20 N -0.661 5.661 21 C -0.292 4.292 22 H 0.050 0.950 23 C -0.086 4.086 24 N -0.971 5.971 25 Si 1.106 2.894 26 H -0.307 1.307 27 H -0.262 1.262 28 H -0.264 1.264 29 C 0.096 3.904 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.176 0.824 35 H 0.206 0.794 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.245 0.755 48 H 0.049 0.951 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 -6.609 33.907 35.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.089 0.911 4 N -0.346 5.346 5 C 0.346 3.654 6 O -0.448 6.448 7 C -0.069 4.069 8 C -0.189 4.189 9 C -0.012 4.012 10 N -0.260 5.260 11 C 0.131 3.869 12 O -0.215 6.215 13 C -0.009 4.009 14 C -0.190 4.190 15 C -0.164 4.164 16 C -0.175 4.175 17 C -0.177 4.177 18 C -0.122 4.122 19 C 0.000 4.000 20 N -0.390 5.390 21 C -0.419 4.419 22 H 0.068 0.932 23 C -0.278 4.278 24 N -0.616 5.616 25 Si 0.932 3.068 26 H -0.235 1.235 27 H -0.188 1.188 28 H -0.190 1.190 29 C -0.029 4.029 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.194 0.806 35 H 0.222 0.778 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.107 -5.264 33.515 34.662 hybrid contribution 1.691 -0.491 -0.243 1.777 sum -5.416 -5.754 33.272 34.198 Atomic orbital electron populations 1.22106 0.93278 1.03457 1.02607 1.20853 0.95271 0.96221 0.82212 0.91115 1.45767 1.65719 1.14824 1.08312 1.18319 0.77475 0.86012 0.83588 1.90778 1.51473 1.17142 1.85417 1.20072 0.99026 0.95110 0.92648 1.22528 1.01033 0.93054 1.02285 1.23088 0.91660 1.01094 0.85402 1.67176 1.20363 1.07386 1.31067 1.19695 0.92368 0.88294 0.86498 1.86348 1.79890 1.38795 1.16477 1.24499 0.97532 0.96620 0.82246 1.23454 0.97720 1.02861 0.94962 1.22628 0.96284 1.01061 0.96444 1.23313 1.00144 1.00206 0.93875 1.21101 1.03882 1.02064 0.90683 1.23292 0.95989 1.00541 0.92412 1.22510 0.95115 0.99035 0.83303 1.46097 1.21005 1.69923 1.01939 1.20026 1.07288 1.28923 0.85693 0.93179 1.27095 1.08640 1.01005 0.91066 1.71027 1.11985 1.48849 1.29754 0.83319 0.72315 0.76467 0.74732 1.23478 1.18789 1.18952 1.22959 0.88557 0.96469 0.94887 0.92946 0.90745 0.90246 0.74476 0.80629 0.77791 0.86714 0.89816 0.90443 0.88359 0.89288 0.89835 0.89422 0.84420 0.85802 0.92443 0.94622 0.94558 0.93381 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.48 71.98 0.68 -2.50 16 2 C 0.16 3.79 2.35 44.99 0.11 3.90 16 3 H 0.07 2.06 7.41 -2.39 -0.02 2.04 16 4 N -0.69 -13.61 4.90 -445.09 -2.18 -15.79 16 5 C 0.56 13.56 7.76 86.88 0.67 14.23 16 6 O -0.57 -18.54 16.10 -3.77 -0.06 -18.60 16 7 C -0.06 -1.17 5.91 -19.90 -0.12 -1.28 16 8 C -0.17 -2.15 9.61 22.63 0.22 -1.94 16 9 C 0.14 1.76 11.17 84.62 0.94 2.71 16 10 N -0.54 -9.71 8.56 -309.14 -2.65 -12.36 16 11 C 0.31 6.72 7.49 84.80 0.63 7.35 16 12 O -0.31 -6.64 10.12 -90.01 -0.91 -7.55 16 13 C 0.05 0.74 4.18 31.12 0.13 0.87 16 14 C -0.15 -1.89 7.91 31.12 0.25 -1.64 16 15 C -0.13 -1.08 8.08 31.12 0.25 -0.83 16 16 C -0.14 -1.64 7.91 31.12 0.25 -1.39 16 17 C -0.16 -3.58 9.61 22.75 0.22 -3.37 16 18 C -0.10 -2.85 3.52 -10.37 -0.04 -2.88 16 19 C 0.13 4.41 8.12 83.18 0.68 5.09 16 20 N -0.66 -31.07 3.69 -737.83 -2.72 -33.79 16 21 C -0.29 -16.93 11.08 84.03 0.93 -16.00 16 22 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 23 C -0.09 -5.18 5.50 84.86 0.47 -4.72 16 24 N -0.97 -63.13 13.70 21.65 0.30 -62.83 16 25 Si 1.11 53.00 25.16 68.60 1.73 54.73 16 26 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 27 H -0.26 -11.15 6.51 99.48 0.65 -10.50 16 28 H -0.26 -11.55 6.21 99.48 0.62 -10.93 16 29 C 0.10 3.66 5.27 83.27 0.44 4.10 16 30 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.42 5.40 6.74 -92.71 -0.62 4.78 16 34 H 0.18 1.01 6.53 -2.91 -0.02 0.99 16 35 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.12 1.82 6.87 -2.39 -0.02 1.81 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.14 3.48 7.74 -2.91 -0.02 3.46 16 44 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.29 8.11 -2.39 -0.02 1.27 16 47 H 0.25 16.03 8.73 -92.70 -0.81 15.22 16 48 H 0.05 1.84 7.50 -2.39 -0.02 1.82 16 49 H 0.06 2.14 4.72 -2.39 -0.01 2.13 16 Total: -1.00 -79.55 397.04 0.36 -79.19 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.15 Total: 15.29 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.71 Total: 1.71 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -7.25 Total: -124.77 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.97 Total: -26.15 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.73 Total: 54.73 kcal Total: -79.55 0.36 -79.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970663343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.981 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds