Wall clock time and date at job start Wed Apr 1 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 N 1.46496 * 109.46938 * 239.99574 * 2 1 3 5 5 C 1.34777 * 119.99875 * 85.00546 * 4 2 1 6 6 O 1.21516 * 120.00178 * 359.97438 * 5 4 2 7 7 C 1.48169 * 120.00260 * 179.97438 * 5 4 2 8 8 C 1.39964 * 120.89045 * 359.97438 * 7 5 4 9 9 C 1.37974 * 119.13689 * 179.97438 * 8 7 5 10 10 N 1.31909 * 120.97597 * 359.97438 * 9 8 7 11 11 C 1.32178 * 121.96854 * 0.02562 * 10 9 8 12 12 O 1.35690 * 119.62057 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99995 * 359.97438 * 12 11 10 14 14 C 1.53783 * 113.61163 * 247.49917 * 13 12 11 15 15 C 1.53781 * 87.07633 * 220.01591 * 14 13 12 16 16 C 1.53778 * 113.61473 * 150.00071 * 13 12 11 17 17 C 1.38894 * 120.75737 * 359.97438 * 11 10 9 18 18 C 1.52995 * 109.46772 * 119.99797 * 2 1 3 19 19 C 1.53941 * 113.74355 * 281.82219 * 18 2 1 20 20 N 1.47814 * 86.04094 * 222.08830 * 19 18 2 21 21 C 1.36939 * 134.46256 * 204.64816 * 20 19 18 22 22 H 1.07992 * 120.00236 * 179.86186 * 21 20 19 23 23 C 1.38816 * 119.99463 * 359.85842 * 21 20 19 24 24 N 1.31623 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00002 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46886 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47402 * 120.00021 * 25 23 21 28 28 H 1.48503 * 109.47277 * 240.00728 * 25 23 21 29 29 C 1.47584 * 91.04877 * 24.54901 * 20 19 18 30 30 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47259 * 300.07573 * 1 2 3 32 32 H 1.09001 * 109.46946 * 60.07865 * 1 2 3 33 33 H 0.96996 * 120.00552 * 264.99517 * 4 2 1 34 34 H 1.08007 * 120.42967 * 0.25121 * 8 7 5 35 35 H 1.07999 * 119.51193 * 179.97438 * 9 8 7 36 36 H 1.09004 * 112.85100 * 18.80333 * 13 12 11 37 37 H 1.08994 * 113.61478 * 334.56727 * 14 13 12 38 38 H 1.09005 * 113.61200 * 105.47150 * 14 13 12 39 39 H 1.08997 * 113.61955 * 270.88026 * 15 14 13 40 40 H 1.09009 * 113.61054 * 139.98294 * 15 14 13 41 41 H 1.09003 * 113.61534 * 254.52865 * 16 13 12 42 42 H 1.09002 * 113.61210 * 25.34891 * 16 13 12 43 43 H 1.07993 * 120.52859 * 180.02562 * 17 11 10 44 44 H 1.08995 * 112.94931 * 53.41745 * 18 2 1 45 45 H 1.09007 * 113.77092 * 336.35131 * 19 18 2 46 46 H 1.09003 * 113.77296 * 107.74852 * 19 18 2 47 47 H 0.97006 * 119.99723 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.76690 * 221.15525 * 29 20 19 49 49 H 1.08999 * 113.87189 * 89.76848 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8578 1.1606 -2.4118 7 6 2.6415 -0.7167 -3.5668 8 6 2.9806 -2.0740 -3.5247 9 6 3.4368 -2.6883 -4.6729 10 7 3.5554 -2.0158 -5.8014 11 6 3.2470 -0.7334 -5.8876 12 8 3.3869 -0.0882 -7.0731 13 6 3.8707 -0.8564 -8.1767 14 6 5.2713 -0.4362 -8.6528 15 6 4.7594 -0.6431 -10.0880 16 6 3.3483 -0.3730 -9.5398 17 6 2.7804 -0.0390 -4.7789 18 6 2.0399 -0.7212 1.2492 19 6 1.9743 0.1330 2.5283 20 7 3.3097 -0.4177 2.8417 21 6 4.0194 -0.6143 3.9963 22 1 5.0065 -1.0503 3.9558 23 6 3.4697 -0.2530 5.2187 24 7 2.2664 0.2780 5.2680 25 14 4.4379 -0.5204 6.7937 26 1 5.7537 -1.1272 6.4688 27 1 4.6486 0.7833 7.4726 28 1 3.6812 -1.4296 7.6916 29 6 3.5701 -0.6729 1.4116 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 2.2491 -1.6318 -1.1526 34 1 2.8822 -2.6343 -2.6066 35 1 3.7006 -3.7353 -4.6472 36 1 3.7639 -1.9304 -8.0240 37 1 5.5182 0.6001 -8.4223 38 1 6.0579 -1.1339 -8.3649 39 1 4.8969 -1.6589 -10.4586 40 1 5.1079 0.1152 -10.7894 41 1 2.5823 -1.0195 -9.9681 42 1 3.0681 0.6803 -9.5515 43 1 2.5292 1.0087 -4.8536 44 1 1.6176 -1.7192 1.3660 45 1 1.9750 1.2067 2.3401 46 1 1.1953 -0.1775 3.2245 47 1 1.8821 0.5302 6.1223 48 1 4.0627 -1.6257 1.2180 49 1 4.0407 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970663344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:48 Heat of formation + Delta-G solvation = 41.383498 kcal Electronic energy + Delta-G solvation = -29201.368454 eV Core-core repulsion = 25131.627676 eV Total energy + Delta-G solvation = -4069.740778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.17596 -40.01271 -39.08492 -38.01487 -36.70522 -34.94016 -33.07670 -32.13423 -30.96282 -30.14424 -27.50329 -26.17555 -26.11247 -25.08407 -24.48195 -23.75067 -23.59325 -21.54998 -20.59010 -20.03265 -19.59014 -18.58548 -17.61690 -16.95895 -16.56633 -16.14246 -15.95197 -15.78765 -15.51415 -15.11270 -14.93470 -14.78065 -14.49510 -14.12354 -13.92178 -13.63007 -13.48573 -13.14823 -12.90905 -12.81670 -12.37160 -12.24015 -12.09940 -11.91514 -11.72087 -11.63247 -11.43373 -11.25908 -10.92862 -10.90717 -10.71681 -10.69152 -10.37535 -10.35446 -10.18297 -9.99267 -9.84079 -9.69712 -9.45245 -8.95024 -8.82259 -8.81105 -6.89023 -5.78313 -3.10381 0.45199 0.83396 2.59778 2.77735 3.14791 3.37919 3.43258 3.45807 3.57431 3.92080 4.11264 4.12805 4.36871 4.39832 4.43754 4.47193 4.65229 4.70677 4.79685 5.07703 5.12453 5.15122 5.24279 5.30095 5.35949 5.38600 5.42152 5.47576 5.49925 5.51780 5.60896 5.64212 5.74771 5.78222 5.80815 5.95298 6.02834 6.09090 6.23162 6.32665 6.41360 6.51770 6.59918 6.74762 6.95981 7.20654 7.33806 7.45810 7.49389 7.54838 7.96761 8.13897 9.03414 9.69634 10.58362 11.39008 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.001791 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.387231 B =15633.741940 C =16169.211567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.707 5.707 5 C 0.555 3.445 6 O -0.528 6.528 7 C -0.047 4.047 8 C -0.182 4.182 9 C 0.139 3.861 10 N -0.531 5.531 11 C 0.320 3.680 12 O -0.291 6.291 13 C 0.060 3.940 14 C -0.152 4.152 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.135 4.135 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.154 0.846 44 H 0.090 0.910 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.253 0.747 48 H 0.041 0.959 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -6.366 -28.381 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.108 0.892 4 N -0.357 5.357 5 C 0.341 3.659 6 O -0.405 6.405 7 C -0.057 4.057 8 C -0.203 4.203 9 C -0.017 4.017 10 N -0.255 5.255 11 C 0.141 3.859 12 O -0.198 6.198 13 C 0.004 3.996 14 C -0.190 4.190 15 C -0.176 4.176 16 C -0.175 4.175 17 C -0.157 4.157 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.171 0.829 44 H 0.108 0.892 45 H 0.046 0.954 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.136 -5.636 -28.847 29.392 hybrid contribution 0.480 -0.269 1.634 1.724 sum 0.616 -5.905 -27.212 27.852 Atomic orbital electron populations 1.22116 0.95173 1.01927 1.02454 1.21207 0.93980 0.97574 0.82691 0.89187 1.46049 1.66058 1.14130 1.09494 1.18066 0.78377 0.86544 0.82948 1.90792 1.49714 1.15233 1.84752 1.20240 0.97665 0.93917 0.93925 1.22193 1.02811 0.94431 1.00869 1.22362 0.93328 0.99635 0.86344 1.67081 1.20559 1.07921 1.29928 1.19657 0.91814 0.87816 0.86572 1.86371 1.79782 1.37783 1.15884 1.24211 0.94755 0.97656 0.83006 1.23454 0.96768 1.02954 0.95836 1.22629 0.96105 1.02508 0.96404 1.23275 0.97616 1.02959 0.93611 1.21146 1.02353 1.02459 0.89734 1.23876 0.97627 1.00820 0.94435 1.22236 0.89668 0.93906 0.89209 1.45991 1.16324 1.71864 0.99623 1.19070 0.98473 1.34718 0.82795 0.90245 1.24783 0.97077 1.01112 0.97503 1.69818 1.15345 1.47356 1.24297 0.86054 0.78938 0.77359 0.83451 1.20498 1.21744 1.21689 1.22542 0.92993 0.97708 0.86897 0.92652 0.90866 0.92746 0.76558 0.83857 0.81677 0.86483 0.89146 0.90757 0.89659 0.90383 0.90594 0.88946 0.82859 0.89216 0.95354 0.90614 0.93665 0.94126 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.44 37.16 0.35 -1.79 16 2 C 0.15 2.22 2.29 -67.93 -0.16 2.06 16 3 H 0.09 1.55 7.48 -51.93 -0.39 1.17 16 4 N -0.71 -8.78 4.90 -54.65 -0.27 -9.04 16 5 C 0.56 7.65 7.76 -12.18 -0.09 7.56 16 6 O -0.53 -9.16 16.10 5.35 0.09 -9.08 16 7 C -0.05 -0.54 5.91 -104.67 -0.62 -1.15 16 8 C -0.18 -1.58 9.61 -39.03 -0.38 -1.95 16 9 C 0.14 1.15 11.17 -17.62 -0.20 0.95 16 10 N -0.53 -5.47 8.56 -13.38 -0.11 -5.59 16 11 C 0.32 3.65 7.49 -17.16 -0.13 3.52 16 12 O -0.29 -3.18 10.13 -18.77 -0.19 -3.38 16 13 C 0.06 0.50 4.18 -25.92 -0.11 0.40 16 14 C -0.15 -1.08 7.91 -25.92 -0.21 -1.28 16 15 C -0.14 -0.74 8.08 -25.92 -0.21 -0.95 16 16 C -0.14 -0.88 7.91 -25.92 -0.21 -1.09 16 17 C -0.14 -1.62 9.61 -38.84 -0.37 -1.99 16 18 C -0.15 -2.54 3.35 -89.70 -0.30 -2.84 16 19 C 0.18 3.99 6.98 -2.84 -0.02 3.97 16 20 N -0.61 -15.48 3.70 -177.67 -0.66 -16.14 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -27.12 11.39 55.49 0.63 -26.49 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.12 2.45 8.38 -2.96 -0.02 2.43 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.89 6.74 -40.82 -0.28 3.61 16 34 H 0.14 0.87 6.53 -52.48 -0.34 0.53 16 35 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 1.00 6.87 -51.93 -0.36 0.64 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.15 1.88 7.74 -52.49 -0.41 1.47 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 46 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -33.60 404.28 -9.96 -43.56 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.60 Total: 1.88 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.92 Total: 1.11 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.41 Total: -57.26 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.10 Total: -12.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.60 -9.96 -43.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970663344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.946 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds