Wall clock time and date at job start Wed Apr 1 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 N 1.46496 * 109.46938 * 239.99574 * 2 1 3 5 5 C 1.34777 * 119.99875 * 85.00546 * 4 2 1 6 6 O 1.21516 * 120.00178 * 359.97438 * 5 4 2 7 7 C 1.48169 * 120.00260 * 179.97438 * 5 4 2 8 8 C 1.39964 * 120.89045 * 359.97438 * 7 5 4 9 9 C 1.37974 * 119.13689 * 179.97438 * 8 7 5 10 10 N 1.31909 * 120.97597 * 359.97438 * 9 8 7 11 11 C 1.32178 * 121.96854 * 0.02562 * 10 9 8 12 12 O 1.35690 * 119.62057 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99995 * 359.97438 * 12 11 10 14 14 C 1.53783 * 113.61163 * 247.49917 * 13 12 11 15 15 C 1.53781 * 87.07633 * 220.01591 * 14 13 12 16 16 C 1.53778 * 113.61473 * 150.00071 * 13 12 11 17 17 C 1.38894 * 120.75737 * 359.97438 * 11 10 9 18 18 C 1.52995 * 109.46772 * 119.99797 * 2 1 3 19 19 C 1.53941 * 113.74355 * 281.82219 * 18 2 1 20 20 N 1.47814 * 86.04094 * 222.08830 * 19 18 2 21 21 C 1.36939 * 134.46256 * 204.64816 * 20 19 18 22 22 H 1.07992 * 120.00236 * 179.86186 * 21 20 19 23 23 C 1.38816 * 119.99463 * 359.85842 * 21 20 19 24 24 N 1.31623 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00002 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46886 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47402 * 120.00021 * 25 23 21 28 28 H 1.48503 * 109.47277 * 240.00728 * 25 23 21 29 29 C 1.47584 * 91.04877 * 24.54901 * 20 19 18 30 30 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47259 * 300.07573 * 1 2 3 32 32 H 1.09001 * 109.46946 * 60.07865 * 1 2 3 33 33 H 0.96996 * 120.00552 * 264.99517 * 4 2 1 34 34 H 1.08007 * 120.42967 * 0.25121 * 8 7 5 35 35 H 1.07999 * 119.51193 * 179.97438 * 9 8 7 36 36 H 1.09004 * 112.85100 * 18.80333 * 13 12 11 37 37 H 1.08994 * 113.61478 * 334.56727 * 14 13 12 38 38 H 1.09005 * 113.61200 * 105.47150 * 14 13 12 39 39 H 1.08997 * 113.61955 * 270.88026 * 15 14 13 40 40 H 1.09009 * 113.61054 * 139.98294 * 15 14 13 41 41 H 1.09003 * 113.61534 * 254.52865 * 16 13 12 42 42 H 1.09002 * 113.61210 * 25.34891 * 16 13 12 43 43 H 1.07993 * 120.52859 * 180.02562 * 17 11 10 44 44 H 1.08995 * 112.94931 * 53.41745 * 18 2 1 45 45 H 1.09007 * 113.77092 * 336.35131 * 19 18 2 46 46 H 1.09003 * 113.77296 * 107.74852 * 19 18 2 47 47 H 0.97006 * 119.99723 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.76690 * 221.15525 * 29 20 19 49 49 H 1.08999 * 113.87189 * 89.76848 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8578 1.1606 -2.4118 7 6 2.6415 -0.7167 -3.5668 8 6 2.9806 -2.0740 -3.5247 9 6 3.4368 -2.6883 -4.6729 10 7 3.5554 -2.0158 -5.8014 11 6 3.2470 -0.7334 -5.8876 12 8 3.3869 -0.0882 -7.0731 13 6 3.8707 -0.8564 -8.1767 14 6 5.2713 -0.4362 -8.6528 15 6 4.7594 -0.6431 -10.0880 16 6 3.3483 -0.3730 -9.5398 17 6 2.7804 -0.0390 -4.7789 18 6 2.0399 -0.7212 1.2492 19 6 1.9743 0.1330 2.5283 20 7 3.3097 -0.4177 2.8417 21 6 4.0194 -0.6143 3.9963 22 1 5.0065 -1.0503 3.9558 23 6 3.4697 -0.2530 5.2187 24 7 2.2664 0.2780 5.2680 25 14 4.4379 -0.5204 6.7937 26 1 5.7537 -1.1272 6.4688 27 1 4.6486 0.7833 7.4726 28 1 3.6812 -1.4296 7.6916 29 6 3.5701 -0.6729 1.4116 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 2.2491 -1.6318 -1.1526 34 1 2.8822 -2.6343 -2.6066 35 1 3.7006 -3.7353 -4.6472 36 1 3.7639 -1.9304 -8.0240 37 1 5.5182 0.6001 -8.4223 38 1 6.0579 -1.1339 -8.3649 39 1 4.8969 -1.6589 -10.4586 40 1 5.1079 0.1152 -10.7894 41 1 2.5823 -1.0195 -9.9681 42 1 3.0681 0.6803 -9.5515 43 1 2.5292 1.0087 -4.8536 44 1 1.6176 -1.7192 1.3660 45 1 1.9750 1.2067 2.3401 46 1 1.1953 -0.1775 3.2245 47 1 1.8821 0.5302 6.1223 48 1 4.0627 -1.6257 1.2180 49 1 4.0407 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970663344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:47 Heat of formation + Delta-G solvation = 19.171882 kcal Electronic energy + Delta-G solvation = -29202.331622 eV Core-core repulsion = 25131.627676 eV Total energy + Delta-G solvation = -4070.703946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.99348 -41.03302 -40.00943 -39.40987 -37.38171 -36.29775 -34.27796 -33.78608 -31.98268 -31.15613 -29.32642 -26.98881 -26.65204 -26.48371 -25.83461 -25.09010 -24.35441 -22.87639 -21.69972 -21.01760 -20.55836 -19.69621 -18.77553 -18.43885 -17.66441 -17.09830 -16.80786 -16.78038 -16.67070 -16.24990 -15.93367 -15.82148 -15.73309 -15.48725 -15.05598 -14.87802 -14.73552 -14.17419 -14.04765 -13.45713 -13.43662 -13.42173 -13.26839 -13.07323 -12.98946 -12.94924 -12.70234 -12.46865 -12.37439 -12.24005 -12.00585 -11.81602 -11.62917 -11.47212 -11.26989 -11.25335 -11.17067 -11.05224 -10.87257 -10.66084 -10.13187 -9.55993 -8.91296 -7.90400 -5.23542 -0.40800 0.08965 1.45867 1.47022 1.56980 1.75151 1.79267 2.19222 2.47540 2.75530 3.23413 3.30229 3.39123 3.45254 3.58419 3.59783 3.75099 3.88082 3.88866 3.91379 3.94384 4.02455 4.10945 4.26538 4.44068 4.54265 4.58634 4.63635 4.71146 4.76490 4.78340 4.78572 4.83809 4.87544 4.96026 4.97354 4.99151 5.02301 5.08617 5.11049 5.23141 5.26406 5.31417 5.43876 5.48517 5.55695 5.65985 5.94811 6.24117 6.46562 6.72627 6.92773 7.10389 7.61450 8.56900 9.26770 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.001791 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.387231 B =15633.741940 C =16169.211567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.062 0.938 4 N -0.692 5.692 5 C 0.557 3.443 6 O -0.572 6.572 7 C -0.057 4.057 8 C -0.168 4.168 9 C 0.144 3.856 10 N -0.535 5.535 11 C 0.310 3.690 12 O -0.308 6.308 13 C 0.047 3.953 14 C -0.155 4.155 15 C -0.127 4.127 16 C -0.136 4.136 17 C -0.156 4.156 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.234 4.234 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.265 1.265 27 H -0.296 1.296 28 H -0.289 1.289 29 C 0.126 3.874 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.417 0.583 34 H 0.177 0.823 35 H 0.207 0.793 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.010 0.990 46 H 0.048 0.952 47 H 0.248 0.752 48 H 0.066 0.934 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 -9.372 -29.772 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.081 0.919 4 N -0.344 5.344 5 C 0.344 3.656 6 O -0.451 6.451 7 C -0.068 4.068 8 C -0.188 4.188 9 C -0.011 4.011 10 N -0.259 5.259 11 C 0.132 3.868 12 O -0.215 6.215 13 C -0.009 4.009 14 C -0.193 4.193 15 C -0.164 4.164 16 C -0.173 4.173 17 C -0.178 4.178 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.189 1.189 27 H -0.223 1.223 28 H -0.216 1.216 29 C 0.001 3.999 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.255 0.745 34 H 0.194 0.806 35 H 0.224 0.776 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.154 0.846 44 H 0.129 0.871 45 H 0.028 0.972 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.064 -8.680 -30.285 31.522 hybrid contribution 0.236 0.643 2.006 2.120 sum 1.300 -8.037 -28.279 29.428 Atomic orbital electron populations 1.22056 0.93814 1.03266 1.01962 1.20841 0.94896 0.96009 0.82653 0.91946 1.45774 1.65554 1.14773 1.08268 1.18385 0.77511 0.86035 0.83653 1.90776 1.51630 1.17293 1.85447 1.20064 0.99030 0.95202 0.92508 1.22535 1.00962 0.92948 1.02395 1.23098 0.91583 1.01109 0.85334 1.67182 1.20405 1.07305 1.31007 1.19678 0.92278 0.88292 0.86562 1.86353 1.80029 1.38779 1.16376 1.24506 0.95874 0.97551 0.82941 1.23466 0.96188 1.02446 0.97170 1.22628 0.94695 1.03647 0.95417 1.23297 0.98698 1.02814 0.92525 1.21087 1.03902 1.02066 0.90712 1.23464 0.96000 1.00554 0.92694 1.22150 0.88282 0.93709 0.91563 1.46424 1.17289 1.72075 1.01211 1.19473 0.98777 1.33860 0.84157 0.89832 1.25621 0.98154 1.01647 1.00662 1.70004 1.16878 1.48820 1.24527 0.85024 0.78178 0.76795 0.79412 1.18916 1.22331 1.21625 1.22701 0.94818 0.98595 0.83755 0.90346 0.91658 0.93017 0.74477 0.80603 0.77625 0.86562 0.90006 0.90571 0.88273 0.89361 0.89590 0.89467 0.84559 0.87071 0.97207 0.93370 0.94272 0.91586 0.95218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.44 71.98 0.68 -3.27 16 2 C 0.16 4.62 2.29 44.99 0.10 4.72 16 3 H 0.06 2.19 7.48 -2.39 -0.02 2.17 16 4 N -0.69 -15.70 4.90 -445.10 -2.18 -17.88 16 5 C 0.56 14.95 7.76 86.88 0.67 15.62 16 6 O -0.57 -20.37 16.10 -3.77 -0.06 -20.43 16 7 C -0.06 -1.25 5.91 -19.90 -0.12 -1.37 16 8 C -0.17 -2.33 9.61 22.63 0.22 -2.11 16 9 C 0.14 1.86 11.17 84.62 0.94 2.81 16 10 N -0.53 -10.01 8.56 -309.13 -2.65 -12.65 16 11 C 0.31 6.99 7.49 84.80 0.63 7.63 16 12 O -0.31 -6.87 10.13 -90.09 -0.91 -7.78 16 13 C 0.05 0.77 4.18 31.12 0.13 0.90 16 14 C -0.15 -2.09 7.91 31.12 0.25 -1.84 16 15 C -0.13 -1.14 8.08 31.12 0.25 -0.89 16 16 C -0.14 -1.62 7.91 31.12 0.25 -1.38 16 17 C -0.16 -3.80 9.61 22.75 0.22 -3.58 16 18 C -0.11 -3.53 3.35 -10.14 -0.03 -3.57 16 19 C 0.17 7.81 6.98 86.44 0.60 8.42 16 20 N -0.64 -32.47 3.70 -716.02 -2.65 -35.12 16 21 C -0.23 -13.07 10.70 84.03 0.90 -12.17 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.95 -57.44 11.39 21.65 0.25 -57.19 16 25 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 C 0.13 4.75 8.38 86.49 0.72 5.48 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.42 6.47 6.74 -92.71 -0.62 5.84 16 34 H 0.18 1.21 6.53 -2.91 -0.02 1.19 16 35 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.12 1.87 6.87 -2.39 -0.02 1.85 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.14 3.66 7.74 -2.91 -0.02 3.64 16 44 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.01 0.50 8.03 -2.38 -0.02 0.48 16 46 H 0.05 2.48 7.16 -2.39 -0.02 2.46 16 47 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -75.84 404.28 1.04 -74.80 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.33 Total: 16.62 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.89 Total: 11.99 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -7.23 Total: -122.85 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.97 Total: -28.21 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.84 1.04 -74.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970663344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.968 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds