Wall clock time and date at job start Wed Apr 1 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47213 * 2 1 4 4 N 1.46505 * 109.47008 * 240.00161 * 2 1 3 5 5 C 1.34779 * 119.99923 * 84.99570 * 4 2 1 6 6 O 1.21558 * 119.99880 * 0.02562 * 5 4 2 7 7 C 1.47855 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.39702 * 120.07432 * 359.72920 * 7 5 4 9 9 C 1.38060 * 120.14484 * 179.71743 * 8 7 5 10 10 C 1.38106 * 120.29403 * 0.55646 * 9 8 7 11 11 C 1.39664 * 120.14405 * 359.72249 * 10 9 8 12 12 C 1.47860 * 120.06956 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99790 * 203.35478 * 12 11 10 14 14 N 1.34782 * 120.00352 * 23.36193 * 12 11 10 15 15 C 1.46504 * 119.99891 * 168.99964 * 14 12 11 16 16 C 1.46500 * 119.99708 * 348.99711 * 14 12 11 17 17 C 1.39303 * 120.07198 * 180.02562 * 7 5 4 18 18 C 1.53000 * 109.47515 * 120.00148 * 2 1 3 19 19 C 1.53940 * 113.73995 * 281.90913 * 18 2 1 20 20 N 1.47819 * 86.03468 * 222.08110 * 19 18 2 21 21 C 1.36935 * 134.45308 * 204.64326 * 20 19 18 22 22 H 1.08004 * 119.99359 * 179.87339 * 21 20 19 23 23 C 1.38812 * 120.00741 * 359.86659 * 21 20 19 24 24 N 1.31618 * 119.99448 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47496 * 120.00135 * 25 23 21 28 28 H 1.48499 * 109.47030 * 240.00612 * 25 23 21 29 29 C 1.47579 * 91.04856 * 24.55421 * 20 19 18 30 30 H 1.08993 * 109.47242 * 175.50737 * 1 2 3 31 31 H 1.08998 * 109.47355 * 55.50334 * 1 2 3 32 32 H 1.09000 * 109.46686 * 295.50159 * 1 2 3 33 33 H 0.96996 * 120.00110 * 265.00288 * 4 2 1 34 34 H 1.08000 * 119.92743 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.85315 * 180.25472 * 9 8 7 36 36 H 1.08001 * 119.92550 * 179.70065 * 10 9 8 37 37 H 1.08996 * 109.46865 * 89.99936 * 15 14 12 38 38 H 1.08998 * 109.46699 * 209.99907 * 15 14 12 39 39 H 1.09001 * 109.46902 * 329.99425 * 15 14 12 40 40 H 1.09000 * 109.47144 * 51.90524 * 16 14 12 41 41 H 1.08993 * 109.46724 * 171.90371 * 16 14 12 42 42 H 1.09000 * 109.47087 * 291.90628 * 16 14 12 43 43 H 1.08001 * 120.14646 * 359.97438 * 17 7 5 44 44 H 1.08996 * 112.94305 * 53.50175 * 18 2 1 45 45 H 1.08997 * 113.77595 * 336.34551 * 19 18 2 46 46 H 1.09006 * 113.76921 * 107.74996 * 19 18 2 47 47 H 0.97006 * 119.99777 * 179.97438 * 24 23 21 48 48 H 1.09009 * 113.76249 * 221.15260 * 29 20 19 49 49 H 1.08997 * 113.87203 * 89.76946 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8582 1.1613 -2.4116 7 6 2.6392 -0.7153 -3.5646 8 6 2.9768 -2.0695 -3.5024 9 6 3.4311 -2.7233 -4.6303 10 6 3.5659 -2.0417 -5.8239 11 6 3.2373 -0.6863 -5.8985 12 6 3.3817 0.0417 -7.1773 13 8 3.5158 1.2498 -7.1771 14 7 3.3644 -0.6342 -8.3433 15 6 3.2643 0.0939 -9.6106 16 6 3.4458 -2.0969 -8.3432 17 6 2.7732 -0.0217 -4.7652 18 6 2.0401 -0.7213 1.2492 19 6 1.9725 0.1322 2.5286 20 7 3.3085 -0.4172 2.8426 21 6 4.0174 -0.6134 3.9975 22 1 5.0053 -1.0482 3.9574 23 6 3.4667 -0.2535 5.2198 24 7 2.2627 0.2760 5.2687 25 14 4.4336 -0.5219 6.7953 26 1 5.7501 -1.1278 6.4710 27 1 4.6432 0.7813 7.4757 28 1 3.6766 -1.4322 7.6917 29 6 3.5700 -0.6711 1.4125 30 1 -0.3633 -1.0244 -0.0805 31 1 -0.3634 0.5820 -0.8469 32 1 -0.3633 0.4425 0.9276 33 1 2.2489 -1.6317 -1.1527 34 1 2.8783 -2.6071 -2.5709 35 1 3.6869 -3.7713 -4.5779 36 1 3.9264 -2.5579 -6.7014 37 1 4.2644 0.3315 -9.9731 38 1 2.7490 -0.5248 -10.3453 39 1 2.7050 1.0167 -9.4563 40 1 2.6891 -2.5029 -7.6719 41 1 3.2740 -2.4703 -9.3527 42 1 4.4349 -2.4058 -8.0050 43 1 2.5177 1.0263 -4.8176 44 1 1.6189 -1.7199 1.3650 45 1 1.9721 1.2059 2.3411 46 1 1.1934 -0.1798 3.2242 47 1 1.8776 0.5271 6.1228 48 1 4.0640 -1.6233 1.2186 49 1 4.0400 0.1650 0.8948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970748571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:51 Heat of formation + Delta-G solvation = 44.747098 kcal Electronic energy + Delta-G solvation = -29463.540116 eV Core-core repulsion = 25393.945195 eV Total energy + Delta-G solvation = -4069.594922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.97612 -39.94574 -38.49118 -37.71974 -36.20158 -34.86406 -32.60105 -31.94456 -31.42499 -30.28365 -28.50831 -27.47133 -27.03743 -25.00130 -24.35338 -23.71299 -23.23540 -21.41537 -20.75118 -20.11711 -19.20791 -17.92633 -17.17610 -16.84319 -16.58011 -16.31681 -16.27755 -15.86999 -14.97438 -14.86469 -14.64263 -14.55683 -14.17730 -13.97829 -13.93129 -13.63078 -13.49394 -13.36881 -13.30366 -13.12424 -12.72453 -12.55439 -12.28700 -12.04419 -11.82265 -11.59560 -11.40631 -11.28467 -11.21579 -10.89081 -10.67387 -10.34044 -10.32011 -10.09615 -9.81303 -9.67390 -9.43553 -9.42130 -9.36264 -9.14843 -8.85043 -8.78533 -6.86667 -5.76240 -3.08208 0.34898 0.76943 2.27094 2.46641 2.90627 3.19801 3.39235 3.44434 3.47095 3.63125 3.97903 4.28926 4.45541 4.46580 4.48512 4.65514 4.68147 4.82506 4.85074 4.99945 5.04964 5.07781 5.11809 5.17782 5.28817 5.36032 5.40934 5.53676 5.55891 5.65202 5.81748 5.82524 5.88527 5.93421 5.95649 6.00277 6.08528 6.29175 6.36300 6.39281 6.45732 6.58713 6.63855 6.80204 6.81083 7.23357 7.36905 7.56329 7.60094 7.70967 7.98893 8.27572 9.05471 9.71656 10.60865 11.41135 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001883 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.836150 B =14866.698963 C =15221.059671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.712 5.712 5 C 0.555 3.445 6 O -0.534 6.534 7 C -0.135 4.135 8 C -0.061 4.061 9 C -0.134 4.134 10 C -0.105 4.105 11 C -0.145 4.145 12 C 0.561 3.439 13 O -0.525 6.525 14 N -0.621 5.621 15 C 0.087 3.913 16 C 0.066 3.934 17 C -0.004 4.004 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.164 0.836 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.147 0.853 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.075 0.925 47 H 0.253 0.747 48 H 0.040 0.960 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -10.531 -29.790 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.341 3.659 6 O -0.412 6.412 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.152 4.152 10 C -0.123 4.123 11 C -0.148 4.148 12 C 0.350 3.650 13 O -0.402 6.402 14 N -0.355 5.355 15 C -0.055 4.055 16 C -0.076 4.076 17 C -0.023 4.023 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.165 0.835 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.153 -9.006 -29.459 30.826 hybrid contribution 0.714 -0.612 0.937 1.328 sum -0.439 -9.618 -28.521 30.103 Atomic orbital electron populations 1.22114 0.95317 1.01705 1.02528 1.21167 0.93882 0.97577 0.82802 0.89274 1.46057 1.66605 1.13969 1.09638 1.18154 0.78056 0.86599 0.83065 1.90796 1.50155 1.15356 1.84882 1.20027 1.04699 0.94492 0.94601 1.21622 0.94081 0.93241 0.99077 1.21118 1.01120 1.00673 0.92289 1.22920 0.96029 0.93350 0.99977 1.19751 1.06477 0.94591 0.93974 1.18326 0.76340 0.86874 0.83477 1.90817 1.48171 1.14119 1.87067 1.47568 1.74300 1.07259 1.06404 1.21707 1.02066 0.97724 0.83996 1.22508 1.01592 0.79839 1.03695 1.21349 0.90983 1.00579 0.89412 1.23859 0.97593 1.00761 0.94518 1.22235 0.89628 0.93942 0.89225 1.45998 1.16271 1.71946 0.99625 1.19070 0.98411 1.34701 0.82796 0.90266 1.24784 0.97084 1.01167 0.97504 1.69819 1.15284 1.47455 1.24283 0.86052 0.78922 0.77354 0.83469 1.20501 1.21750 1.21708 1.22539 0.93044 0.97680 0.86853 0.92775 0.92730 0.90929 0.76810 0.84891 0.84618 0.81946 0.92506 0.90953 0.90514 0.90197 0.90296 0.91069 0.83546 0.89307 0.95352 0.90656 0.93678 0.94190 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.46 37.16 0.35 -1.88 16 2 C 0.15 2.32 2.29 -67.93 -0.16 2.17 16 3 H 0.09 1.61 7.48 -51.93 -0.39 1.23 16 4 N -0.71 -9.28 4.90 -54.74 -0.27 -9.55 16 5 C 0.55 8.07 7.74 -12.32 -0.10 7.98 16 6 O -0.53 -9.88 16.00 5.31 0.09 -9.79 16 7 C -0.14 -1.59 5.87 -105.02 -0.62 -2.20 16 8 C -0.06 -0.51 9.54 -39.10 -0.37 -0.88 16 9 C -0.13 -0.86 10.02 -39.69 -0.40 -1.25 16 10 C -0.11 -0.71 7.87 -39.10 -0.31 -1.01 16 11 C -0.14 -1.48 5.74 -105.02 -0.60 -2.08 16 12 C 0.56 6.24 7.49 -12.32 -0.09 6.15 16 13 O -0.53 -7.97 16.30 5.32 0.09 -7.88 16 14 N -0.62 -4.53 3.27 -193.47 -0.63 -5.16 16 15 C 0.09 0.50 10.36 59.85 0.62 1.12 16 16 C 0.07 0.21 8.63 59.85 0.52 0.72 16 17 C 0.00 -0.04 9.13 -38.78 -0.35 -0.40 16 18 C -0.15 -2.61 3.35 -89.70 -0.30 -2.91 16 19 C 0.18 4.07 6.90 -2.84 -0.02 4.05 16 20 N -0.61 -15.73 3.70 -177.71 -0.66 -16.39 16 21 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.41 11.39 55.49 0.63 -26.78 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.12 2.52 8.38 -2.97 -0.02 2.49 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.05 7.99 -51.93 -0.41 0.63 16 33 H 0.40 4.06 6.63 -40.82 -0.27 3.78 16 34 H 0.13 0.83 6.39 -52.49 -0.34 0.49 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.16 0.57 3.20 -55.97 -0.18 0.39 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.21 7.86 -51.93 -0.41 -0.20 16 39 H 0.08 0.56 7.60 -51.93 -0.39 0.17 16 40 H 0.08 0.22 6.01 -51.93 -0.31 -0.09 16 41 H 0.08 0.08 7.76 -51.93 -0.40 -0.32 16 42 H 0.07 0.14 6.56 -51.93 -0.34 -0.20 16 43 H 0.15 2.12 7.41 -52.49 -0.39 1.73 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 46 H 0.08 1.91 7.16 -51.93 -0.37 1.54 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 49 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -37.36 398.49 -9.01 -46.37 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.13 Total: 0.66 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.11 Total: 5.26 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.93 Total: -57.88 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.36 -9.01 -46.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970748571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.114 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds