Wall clock time and date at job start Wed Apr 1 2020 03:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47213 * 2 1 4 4 N 1.46505 * 109.47008 * 240.00161 * 2 1 3 5 5 C 1.34779 * 119.99923 * 84.99570 * 4 2 1 6 6 O 1.21558 * 119.99880 * 0.02562 * 5 4 2 7 7 C 1.47855 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.39702 * 120.07432 * 359.72920 * 7 5 4 9 9 C 1.38060 * 120.14484 * 179.71743 * 8 7 5 10 10 C 1.38106 * 120.29403 * 0.55646 * 9 8 7 11 11 C 1.39664 * 120.14405 * 359.72249 * 10 9 8 12 12 C 1.47860 * 120.06956 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99790 * 203.35478 * 12 11 10 14 14 N 1.34782 * 120.00352 * 23.36193 * 12 11 10 15 15 C 1.46504 * 119.99891 * 168.99964 * 14 12 11 16 16 C 1.46500 * 119.99708 * 348.99711 * 14 12 11 17 17 C 1.39303 * 120.07198 * 180.02562 * 7 5 4 18 18 C 1.53000 * 109.47515 * 120.00148 * 2 1 3 19 19 C 1.53940 * 113.73995 * 281.90913 * 18 2 1 20 20 N 1.47819 * 86.03468 * 222.08110 * 19 18 2 21 21 C 1.36935 * 134.45308 * 204.64326 * 20 19 18 22 22 H 1.08004 * 119.99359 * 179.87339 * 21 20 19 23 23 C 1.38812 * 120.00741 * 359.86659 * 21 20 19 24 24 N 1.31618 * 119.99448 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47496 * 120.00135 * 25 23 21 28 28 H 1.48499 * 109.47030 * 240.00612 * 25 23 21 29 29 C 1.47579 * 91.04856 * 24.55421 * 20 19 18 30 30 H 1.08993 * 109.47242 * 175.50737 * 1 2 3 31 31 H 1.08998 * 109.47355 * 55.50334 * 1 2 3 32 32 H 1.09000 * 109.46686 * 295.50159 * 1 2 3 33 33 H 0.96996 * 120.00110 * 265.00288 * 4 2 1 34 34 H 1.08000 * 119.92743 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.85315 * 180.25472 * 9 8 7 36 36 H 1.08001 * 119.92550 * 179.70065 * 10 9 8 37 37 H 1.08996 * 109.46865 * 89.99936 * 15 14 12 38 38 H 1.08998 * 109.46699 * 209.99907 * 15 14 12 39 39 H 1.09001 * 109.46902 * 329.99425 * 15 14 12 40 40 H 1.09000 * 109.47144 * 51.90524 * 16 14 12 41 41 H 1.08993 * 109.46724 * 171.90371 * 16 14 12 42 42 H 1.09000 * 109.47087 * 291.90628 * 16 14 12 43 43 H 1.08001 * 120.14646 * 359.97438 * 17 7 5 44 44 H 1.08996 * 112.94305 * 53.50175 * 18 2 1 45 45 H 1.08997 * 113.77595 * 336.34551 * 19 18 2 46 46 H 1.09006 * 113.76921 * 107.74996 * 19 18 2 47 47 H 0.97006 * 119.99777 * 179.97438 * 24 23 21 48 48 H 1.09009 * 113.76249 * 221.15260 * 29 20 19 49 49 H 1.08997 * 113.87203 * 89.76946 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8582 1.1613 -2.4116 7 6 2.6392 -0.7153 -3.5646 8 6 2.9768 -2.0695 -3.5024 9 6 3.4311 -2.7233 -4.6303 10 6 3.5659 -2.0417 -5.8239 11 6 3.2373 -0.6863 -5.8985 12 6 3.3817 0.0417 -7.1773 13 8 3.5158 1.2498 -7.1771 14 7 3.3644 -0.6342 -8.3433 15 6 3.2643 0.0939 -9.6106 16 6 3.4458 -2.0969 -8.3432 17 6 2.7732 -0.0217 -4.7652 18 6 2.0401 -0.7213 1.2492 19 6 1.9725 0.1322 2.5286 20 7 3.3085 -0.4172 2.8426 21 6 4.0174 -0.6134 3.9975 22 1 5.0053 -1.0482 3.9574 23 6 3.4667 -0.2535 5.2198 24 7 2.2627 0.2760 5.2687 25 14 4.4336 -0.5219 6.7953 26 1 5.7501 -1.1278 6.4710 27 1 4.6432 0.7813 7.4757 28 1 3.6766 -1.4322 7.6917 29 6 3.5700 -0.6711 1.4125 30 1 -0.3633 -1.0244 -0.0805 31 1 -0.3634 0.5820 -0.8469 32 1 -0.3633 0.4425 0.9276 33 1 2.2489 -1.6317 -1.1527 34 1 2.8783 -2.6071 -2.5709 35 1 3.6869 -3.7713 -4.5779 36 1 3.9264 -2.5579 -6.7014 37 1 4.2644 0.3315 -9.9731 38 1 2.7490 -0.5248 -10.3453 39 1 2.7050 1.0167 -9.4563 40 1 2.6891 -2.5029 -7.6719 41 1 3.2740 -2.4703 -9.3527 42 1 4.4349 -2.4058 -8.0050 43 1 2.5177 1.0263 -4.8176 44 1 1.6189 -1.7199 1.3650 45 1 1.9721 1.2059 2.3411 46 1 1.1934 -0.1798 3.2242 47 1 1.8776 0.5271 6.1228 48 1 4.0640 -1.6233 1.2186 49 1 4.0400 0.1650 0.8948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970748571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:50 Heat of formation + Delta-G solvation = 18.224618 kcal Electronic energy + Delta-G solvation = -29464.690217 eV Core-core repulsion = 25393.945195 eV Total energy + Delta-G solvation = -4070.745023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.77117 -41.03719 -39.83184 -38.81962 -36.87543 -36.27331 -34.22162 -33.19281 -32.13668 -31.45468 -29.35827 -28.95330 -27.62110 -26.63587 -25.84312 -24.87889 -24.02740 -22.69695 -21.78701 -21.17822 -20.55663 -18.96122 -18.72385 -17.86341 -17.57427 -17.11660 -16.98100 -16.87407 -16.78787 -16.08315 -15.81574 -15.58568 -15.41802 -15.10920 -14.84111 -14.74923 -14.56671 -14.29759 -14.09334 -13.79566 -13.75129 -13.47015 -13.29466 -13.23551 -13.10045 -13.08211 -12.96872 -12.71233 -12.55384 -12.36479 -12.00010 -11.83133 -11.77879 -11.60096 -11.24473 -11.14936 -10.89789 -10.88187 -10.24548 -10.14458 -9.93487 -9.71313 -8.92690 -7.91005 -5.24568 -0.35358 -0.01256 1.45166 1.46802 1.50546 1.56759 1.83016 2.00213 2.11877 2.46994 2.81975 3.29277 3.37335 3.38501 3.54935 3.78207 3.84942 3.94612 4.00406 4.11047 4.23906 4.25891 4.30977 4.40052 4.44184 4.48113 4.56244 4.62992 4.72779 4.76772 4.82031 4.85381 4.86095 4.88987 4.90571 4.95426 5.05925 5.17892 5.22468 5.24824 5.27297 5.29414 5.44514 5.48130 5.54195 5.64414 5.76943 5.93500 6.20567 6.54038 6.91666 6.97897 7.19483 7.60420 8.56064 9.26287 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001883 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.836150 B =14866.698963 C =15221.059671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.057 0.943 4 N -0.697 5.697 5 C 0.553 3.447 6 O -0.587 6.587 7 C -0.154 4.154 8 C -0.054 4.054 9 C -0.119 4.119 10 C -0.084 4.084 11 C -0.157 4.157 12 C 0.549 3.451 13 O -0.587 6.587 14 N -0.614 5.614 15 C 0.082 3.918 16 C 0.051 3.949 17 C -0.031 4.031 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.643 5.643 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.264 1.264 27 H -0.296 1.296 28 H -0.288 1.288 29 C 0.126 3.874 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.203 0.797 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.248 0.752 48 H 0.067 0.933 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 -15.652 -31.770 35.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.055 3.945 3 H 0.075 0.925 4 N -0.348 5.348 5 C 0.342 3.658 6 O -0.468 6.468 7 C -0.157 4.157 8 C -0.072 4.072 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.160 4.160 12 C 0.339 3.661 13 O -0.468 6.468 14 N -0.346 5.346 15 C -0.060 4.060 16 C -0.089 4.089 17 C -0.051 4.051 18 C -0.126 4.126 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.215 1.215 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.219 0.781 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.086 -14.225 -31.501 34.564 hybrid contribution 0.370 0.933 1.399 1.722 sum 0.456 -13.292 -30.102 32.909 Atomic orbital electron populations 1.22044 0.93926 1.03150 1.01885 1.20800 0.94848 0.95863 0.82960 0.92510 1.45773 1.66116 1.14618 1.08328 1.18661 0.77071 0.86068 0.84047 1.90771 1.52486 1.17832 1.85727 1.19773 1.07116 0.96146 0.92685 1.21961 0.92712 0.91344 1.01216 1.21675 0.98643 1.02531 0.90774 1.23451 0.93498 0.91379 1.01815 1.19772 1.07336 0.96241 0.92693 1.18675 0.76085 0.86394 0.84985 1.90778 1.51372 1.16686 1.87985 1.47736 1.72073 1.09224 1.05518 1.21859 1.02434 0.97609 0.84116 1.22878 1.02985 0.76840 1.06233 1.21140 0.93410 0.99246 0.91301 1.23453 0.95994 1.00550 0.92633 1.22143 0.88346 0.93612 0.91597 1.46435 1.17192 1.72123 1.01201 1.19485 0.98759 1.33938 0.84104 0.89764 1.25652 0.98177 1.01628 1.00761 1.70011 1.16861 1.48879 1.24571 0.84997 0.78173 0.76798 0.79277 1.18827 1.22361 1.21530 1.22686 0.94840 0.98544 0.83762 0.90185 0.93370 0.91664 0.74617 0.82202 0.79884 0.78057 0.92115 0.87224 0.93095 0.89229 0.87246 0.89030 0.87723 0.86958 0.97456 0.93285 0.94254 0.91448 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.46 71.98 0.68 -3.56 16 2 C 0.16 4.98 2.29 44.99 0.10 5.08 16 3 H 0.06 2.17 7.48 -2.38 -0.02 2.15 16 4 N -0.70 -17.38 4.90 -445.37 -2.18 -19.56 16 5 C 0.55 16.51 7.74 86.79 0.67 17.18 16 6 O -0.59 -23.49 16.00 -3.90 -0.06 -23.55 16 7 C -0.15 -3.58 5.87 -20.12 -0.12 -3.69 16 8 C -0.05 -0.69 9.54 22.58 0.22 -0.48 16 9 C -0.12 -0.85 10.02 22.20 0.22 -0.63 16 10 C -0.08 -0.78 7.87 22.58 0.18 -0.60 16 11 C -0.16 -3.13 5.74 -20.12 -0.12 -3.25 16 12 C 0.55 12.56 7.49 86.79 0.65 13.21 16 13 O -0.59 -19.63 16.30 -3.89 -0.06 -19.69 16 14 N -0.61 -7.93 3.27 -884.29 -2.90 -10.83 16 15 C 0.08 0.86 10.36 127.77 1.32 2.18 16 16 C 0.05 0.09 8.63 127.77 1.10 1.19 16 17 C -0.03 -0.82 9.13 22.79 0.21 -0.61 16 18 C -0.11 -3.67 3.35 -10.14 -0.03 -3.71 16 19 C 0.17 8.07 6.90 86.44 0.60 8.66 16 20 N -0.64 -33.21 3.70 -716.14 -2.65 -35.86 16 21 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.95 -58.30 11.39 21.65 0.25 -58.06 16 25 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 C 0.13 4.95 8.38 86.49 0.72 5.68 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.91 7.99 -2.39 -0.02 1.89 16 33 H 0.42 7.13 6.63 -92.71 -0.61 6.52 16 34 H 0.16 1.15 6.39 -2.91 -0.02 1.13 16 35 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.20 0.22 3.20 -6.18 -0.02 0.20 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.31 7.86 -2.39 -0.02 0.29 16 39 H 0.05 0.81 7.60 -2.39 -0.02 0.79 16 40 H 0.09 0.04 6.01 -2.39 -0.01 0.02 16 41 H 0.11 -0.38 7.76 -2.39 -0.02 -0.40 16 42 H 0.09 -0.15 6.56 -2.39 -0.02 -0.17 16 43 H 0.10 3.58 7.41 -2.91 -0.02 3.55 16 44 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 46 H 0.05 2.58 7.16 -2.38 -0.02 2.57 16 47 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 48 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 49 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -90.55 398.49 2.55 -88.01 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.35 Total: 10.66 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.77 Total: 20.73 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.48 Total: -124.30 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.13 Total: -43.24 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -90.55 2.55 -88.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970748571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.231 kcal (2) G-P(sol) polarization free energy of solvation -90.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds