Wall clock time and date at job start Wed Apr 1 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47536 * 2 1 4 4 N 1.46502 * 109.46911 * 240.00334 * 2 1 3 5 5 C 1.34776 * 120.00523 * 84.99996 * 4 2 1 6 6 O 1.21528 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.48025 * 120.00300 * 179.97438 * 5 4 2 8 8 C 1.39561 * 120.00300 * 359.73038 * 7 5 4 9 9 C 1.37815 * 120.00128 * 179.71727 * 8 7 5 10 10 C 1.39560 * 119.99765 * 0.55494 * 9 8 7 11 11 C 1.48041 * 119.99810 * 179.70038 * 10 9 8 12 12 O 1.21521 * 120.00002 * 147.88376 * 11 10 9 13 13 N 1.34779 * 119.99833 * 327.88614 * 11 10 9 14 14 C 1.46491 * 119.99917 * 184.30610 * 13 11 10 15 15 C 1.46503 * 119.99993 * 4.30530 * 13 11 10 16 16 C 1.39549 * 120.00316 * 359.72063 * 10 9 8 17 17 C 1.37818 * 119.99893 * 0.02562 * 16 10 9 18 18 C 1.52997 * 109.47219 * 120.00605 * 2 1 3 19 19 C 1.53499 * 114.20371 * 299.99393 * 18 2 1 20 20 N 1.47067 * 87.98305 * 87.71867 * 19 18 2 21 21 C 1.36942 * 136.05713 * 207.08749 * 20 19 18 22 22 H 1.07997 * 119.99717 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99758 * 180.27761 * 21 20 19 24 24 N 1.31625 * 120.00394 * 359.71667 * 23 21 20 25 25 Si 1.86804 * 119.99940 * 179.72204 * 23 21 20 26 26 H 1.48499 * 109.46938 * 59.99918 * 25 23 21 27 27 H 1.48498 * 109.47070 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47305 * 300.00126 * 25 23 21 29 29 C 1.47061 * 87.88688 * 27.34160 * 20 19 18 30 30 H 1.09001 * 109.47232 * 59.99424 * 1 2 3 31 31 H 1.08993 * 109.47328 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46685 * 300.00241 * 1 2 3 33 33 H 0.97009 * 119.99749 * 264.99613 * 4 2 1 34 34 H 1.07999 * 119.99640 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.00235 * 180.27021 * 9 8 7 36 36 H 1.09002 * 109.47431 * 89.99592 * 14 13 11 37 37 H 1.09000 * 109.47354 * 209.99948 * 14 13 11 38 38 H 1.09008 * 109.47387 * 329.99872 * 14 13 11 39 39 H 1.09004 * 109.46696 * 94.72379 * 15 13 11 40 40 H 1.08999 * 109.47097 * 214.71796 * 15 13 11 41 41 H 1.08997 * 109.47154 * 334.72193 * 15 13 11 42 42 H 1.08005 * 120.00125 * 179.97438 * 16 10 9 43 43 H 1.08003 * 119.99797 * 179.97438 * 17 16 10 44 44 H 1.09002 * 113.28613 * 166.93723 * 18 2 1 45 45 H 1.09002 * 113.47037 * 332.94027 * 19 18 2 46 46 H 1.09002 * 113.52288 * 202.50830 * 19 18 2 47 47 H 0.97004 * 120.00151 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.46954 * 87.43375 * 29 20 19 49 49 H 1.08994 * 113.47245 * 217.87898 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1610 -2.4116 7 6 2.6409 -0.7159 -3.5657 8 6 2.9786 -2.0685 -3.5016 9 6 3.4329 -2.7194 -4.6282 10 6 3.5662 -2.0231 -5.8303 11 6 4.0606 -2.7208 -7.0389 12 8 3.6646 -2.3865 -8.1381 13 7 4.9498 -3.7266 -6.9200 14 6 5.5105 -4.3541 -8.1191 15 6 5.3555 -4.1925 -5.5916 16 6 3.2340 -0.6692 -5.8931 17 6 2.7747 -0.0195 -4.7678 18 6 2.0400 -0.7214 1.2491 19 6 1.5899 -0.0847 2.5714 20 7 0.3768 -0.9128 2.4971 21 6 -0.9103 -0.8196 2.9554 22 1 -1.2180 0.0419 3.5293 23 6 -1.8175 -1.8354 2.6876 24 7 -1.4423 -2.8856 1.9885 25 14 -3.5711 -1.7120 3.3194 26 1 -4.2155 -0.4980 2.7572 27 1 -4.3339 -2.9155 2.9011 28 1 -3.5582 -1.6240 4.8017 29 6 1.1559 -1.8881 1.7195 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 2.8800 -2.6061 -2.5702 35 1 3.6902 -3.7673 -4.5797 36 1 6.4193 -3.8288 -8.4130 37 1 5.7460 -5.3970 -7.9072 38 1 4.7833 -4.3033 -8.9297 39 1 4.7399 -5.0440 -5.3016 40 1 6.4030 -4.4930 -5.6163 41 1 5.2255 -3.3871 -4.8688 42 1 3.3376 -0.1303 -6.8233 43 1 2.5180 1.0284 -4.8163 44 1 3.1032 -0.9579 1.2062 45 1 1.3912 0.9842 2.4931 46 1 2.2339 -0.3328 3.4151 47 1 -2.0763 -3.5957 1.8017 48 1 1.6861 -2.6123 2.3381 49 1 0.5877 -2.3556 0.9155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970753292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:07 Heat of formation + Delta-G solvation = 47.160432 kcal Electronic energy + Delta-G solvation = -29943.365740 eV Core-core repulsion = 25873.875469 eV Total energy + Delta-G solvation = -4069.490272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.91287 -39.97033 -38.80968 -37.78451 -36.09695 -34.55004 -32.37096 -31.99713 -31.47183 -29.47672 -28.36989 -27.69672 -26.97914 -24.75611 -24.61046 -23.79855 -22.89958 -21.61028 -20.53464 -20.01836 -18.92360 -17.75228 -17.35411 -16.84908 -16.76155 -16.25949 -15.78615 -15.29383 -14.97319 -14.94430 -14.77650 -14.62762 -14.35964 -14.04808 -13.81961 -13.61003 -13.46802 -13.18945 -12.89486 -12.73152 -12.64316 -12.60735 -12.26896 -12.13861 -11.78366 -11.27842 -11.21438 -11.08140 -10.98481 -10.77906 -10.61023 -10.35769 -10.33348 -9.94536 -9.79971 -9.70308 -9.36834 -9.23489 -9.19790 -9.12618 -8.76661 -8.67740 -6.85628 -5.80123 -3.11376 0.27712 1.02843 2.24232 2.52104 2.97365 3.28809 3.38381 3.43282 3.43524 3.68735 4.01950 4.38447 4.44027 4.53184 4.66287 4.70985 4.81696 4.88963 5.00039 5.09116 5.14224 5.22122 5.25127 5.26866 5.34035 5.36683 5.40539 5.54049 5.63361 5.85237 5.88460 5.92231 6.01581 6.03412 6.11209 6.29139 6.39744 6.44328 6.48342 6.60180 6.67930 6.76900 6.84006 7.01824 7.19508 7.23312 7.46946 7.58756 7.71343 7.74335 7.94547 8.36552 9.01233 9.67959 10.61189 11.37025 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.002186 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.316809 B =12804.885650 C =13190.542943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.078 0.922 4 N -0.709 5.709 5 C 0.551 3.449 6 O -0.537 6.537 7 C -0.100 4.100 8 C -0.094 4.094 9 C -0.109 4.109 10 C -0.117 4.117 11 C 0.558 3.442 12 O -0.532 6.532 13 N -0.617 5.617 14 C 0.084 3.916 15 C 0.056 3.944 16 C -0.071 4.071 17 C -0.069 4.069 18 C -0.162 4.162 19 C 0.127 3.873 20 N -0.604 5.604 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.158 3.842 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.253 0.747 48 H 0.023 0.977 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.006 -3.620 -15.187 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.096 0.904 4 N -0.359 5.359 5 C 0.337 3.663 6 O -0.416 6.416 7 C -0.104 4.104 8 C -0.113 4.113 9 C -0.128 4.128 10 C -0.120 4.120 11 C 0.347 3.653 12 O -0.409 6.409 13 N -0.350 5.350 14 C -0.058 4.058 15 C -0.086 4.086 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.341 4.341 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.032 3.968 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.224 -2.723 -15.732 22.763 hybrid contribution -0.736 -0.783 0.649 1.256 sum 15.488 -3.506 -15.083 21.901 Atomic orbital electron populations 1.22171 0.92871 1.04394 1.01148 1.20623 0.95764 0.95189 0.81193 0.90422 1.46116 1.65953 1.14023 1.09853 1.18225 0.78291 0.86637 0.83112 1.90764 1.50421 1.15559 1.84824 1.20330 1.00877 0.94352 0.94815 1.21356 0.97267 0.93566 0.99093 1.21791 0.98404 1.01090 0.91474 1.19969 1.03373 0.95210 0.93476 1.18468 0.78530 0.79423 0.88843 1.90781 1.57536 1.65039 1.27559 1.47604 1.43939 1.35571 1.07910 1.21680 0.99131 0.97410 0.87598 1.22549 1.00953 1.00886 0.84208 1.21172 0.96069 0.92875 0.98827 1.21285 0.95765 1.01016 0.90685 1.23382 0.98352 1.01640 0.94809 1.22341 0.88976 0.95773 0.92941 1.45648 1.04244 1.20032 1.63071 1.18814 0.83170 1.03681 1.28417 0.90321 1.24715 0.98078 0.96513 1.00804 1.69787 1.34183 1.09478 1.43135 0.86261 0.84506 0.76961 0.78427 1.21053 1.21636 1.21309 1.22207 0.89387 0.90651 0.94571 0.95331 0.90440 0.89499 0.76739 0.84520 0.83471 0.92499 0.90956 0.90233 0.91682 0.90970 0.88679 0.84410 0.83809 0.91231 0.94000 0.94751 0.93696 0.95970 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.07 37.16 0.30 -2.73 16 2 C 0.18 3.01 2.76 -67.93 -0.19 2.82 16 3 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.71 -10.26 5.03 -54.70 -0.27 -10.54 16 5 C 0.55 8.36 7.74 -12.25 -0.09 8.26 16 6 O -0.54 -10.02 16.00 5.34 0.09 -9.94 16 7 C -0.10 -1.21 5.88 -104.90 -0.62 -1.83 16 8 C -0.09 -0.88 9.53 -39.24 -0.37 -1.26 16 9 C -0.11 -0.91 7.42 -39.24 -0.29 -1.20 16 10 C -0.12 -1.19 5.47 -104.89 -0.57 -1.76 16 11 C 0.56 6.12 7.44 -12.24 -0.09 6.03 16 12 O -0.53 -7.64 16.31 5.35 0.09 -7.55 16 13 N -0.62 -4.82 3.27 -190.57 -0.62 -5.44 16 14 C 0.08 0.52 10.49 59.84 0.63 1.14 16 15 C 0.06 0.26 8.80 59.85 0.53 0.79 16 16 C -0.07 -0.75 9.58 -39.25 -0.38 -1.13 16 17 C -0.07 -0.79 9.58 -39.24 -0.38 -1.17 16 18 C -0.16 -2.74 4.24 -89.97 -0.38 -3.13 16 19 C 0.13 2.42 7.85 -8.51 -0.07 2.36 16 20 N -0.60 -14.23 2.18 -184.60 -0.40 -14.63 16 21 C -0.21 -5.63 9.60 -15.06 -0.14 -5.77 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.92 -25.62 11.50 55.49 0.64 -24.98 16 25 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.16 3.33 6.41 -8.37 -0.05 3.28 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.78 6.33 -51.93 -0.33 1.45 16 32 H 0.09 1.96 5.95 -51.93 -0.31 1.65 16 33 H 0.40 4.78 6.63 -40.82 -0.27 4.51 16 34 H 0.14 1.01 6.39 -52.49 -0.34 0.68 16 35 H 0.15 0.83 4.81 -52.49 -0.25 0.58 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 38 H 0.08 0.61 7.37 -51.92 -0.38 0.22 16 39 H 0.06 0.22 7.44 -51.93 -0.39 -0.17 16 40 H 0.07 0.22 8.11 -51.93 -0.42 -0.21 16 41 H 0.10 0.45 4.71 -51.93 -0.24 0.21 16 42 H 0.14 1.37 7.95 -52.48 -0.42 0.95 16 43 H 0.14 1.66 7.64 -52.48 -0.40 1.26 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.77 5.72 -51.93 -0.30 1.47 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -33.64 391.19 -8.83 -42.46 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.94 Total: 3.67 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.27 Total: 4.48 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.66 Total: -55.59 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.17 Total: -17.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.64 -8.83 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970753292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.624 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds