Wall clock time and date at job start Wed Apr 1 2020 03:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47536 * 2 1 4 4 N 1.46502 * 109.46911 * 240.00334 * 2 1 3 5 5 C 1.34776 * 120.00523 * 84.99996 * 4 2 1 6 6 O 1.21528 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.48025 * 120.00300 * 179.97438 * 5 4 2 8 8 C 1.39561 * 120.00300 * 359.73038 * 7 5 4 9 9 C 1.37815 * 120.00128 * 179.71727 * 8 7 5 10 10 C 1.39560 * 119.99765 * 0.55494 * 9 8 7 11 11 C 1.48041 * 119.99810 * 179.70038 * 10 9 8 12 12 O 1.21521 * 120.00002 * 147.88376 * 11 10 9 13 13 N 1.34779 * 119.99833 * 327.88614 * 11 10 9 14 14 C 1.46491 * 119.99917 * 184.30610 * 13 11 10 15 15 C 1.46503 * 119.99993 * 4.30530 * 13 11 10 16 16 C 1.39549 * 120.00316 * 359.72063 * 10 9 8 17 17 C 1.37818 * 119.99893 * 0.02562 * 16 10 9 18 18 C 1.52997 * 109.47219 * 120.00605 * 2 1 3 19 19 C 1.53499 * 114.20371 * 299.99393 * 18 2 1 20 20 N 1.47067 * 87.98305 * 87.71867 * 19 18 2 21 21 C 1.36942 * 136.05713 * 207.08749 * 20 19 18 22 22 H 1.07997 * 119.99717 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99758 * 180.27761 * 21 20 19 24 24 N 1.31625 * 120.00394 * 359.71667 * 23 21 20 25 25 Si 1.86804 * 119.99940 * 179.72204 * 23 21 20 26 26 H 1.48499 * 109.46938 * 59.99918 * 25 23 21 27 27 H 1.48498 * 109.47070 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47305 * 300.00126 * 25 23 21 29 29 C 1.47061 * 87.88688 * 27.34160 * 20 19 18 30 30 H 1.09001 * 109.47232 * 59.99424 * 1 2 3 31 31 H 1.08993 * 109.47328 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46685 * 300.00241 * 1 2 3 33 33 H 0.97009 * 119.99749 * 264.99613 * 4 2 1 34 34 H 1.07999 * 119.99640 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.00235 * 180.27021 * 9 8 7 36 36 H 1.09002 * 109.47431 * 89.99592 * 14 13 11 37 37 H 1.09000 * 109.47354 * 209.99948 * 14 13 11 38 38 H 1.09008 * 109.47387 * 329.99872 * 14 13 11 39 39 H 1.09004 * 109.46696 * 94.72379 * 15 13 11 40 40 H 1.08999 * 109.47097 * 214.71796 * 15 13 11 41 41 H 1.08997 * 109.47154 * 334.72193 * 15 13 11 42 42 H 1.08005 * 120.00125 * 179.97438 * 16 10 9 43 43 H 1.08003 * 119.99797 * 179.97438 * 17 16 10 44 44 H 1.09002 * 113.28613 * 166.93723 * 18 2 1 45 45 H 1.09002 * 113.47037 * 332.94027 * 19 18 2 46 46 H 1.09002 * 113.52288 * 202.50830 * 19 18 2 47 47 H 0.97004 * 120.00151 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.46954 * 87.43375 * 29 20 19 49 49 H 1.08994 * 113.47245 * 217.87898 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1610 -2.4116 7 6 2.6409 -0.7159 -3.5657 8 6 2.9786 -2.0685 -3.5016 9 6 3.4329 -2.7194 -4.6282 10 6 3.5662 -2.0231 -5.8303 11 6 4.0606 -2.7208 -7.0389 12 8 3.6646 -2.3865 -8.1381 13 7 4.9498 -3.7266 -6.9200 14 6 5.5105 -4.3541 -8.1191 15 6 5.3555 -4.1925 -5.5916 16 6 3.2340 -0.6692 -5.8931 17 6 2.7747 -0.0195 -4.7678 18 6 2.0400 -0.7214 1.2491 19 6 1.5899 -0.0847 2.5714 20 7 0.3768 -0.9128 2.4971 21 6 -0.9103 -0.8196 2.9554 22 1 -1.2180 0.0419 3.5293 23 6 -1.8175 -1.8354 2.6876 24 7 -1.4423 -2.8856 1.9885 25 14 -3.5711 -1.7120 3.3194 26 1 -4.2155 -0.4980 2.7572 27 1 -4.3339 -2.9155 2.9011 28 1 -3.5582 -1.6240 4.8017 29 6 1.1559 -1.8881 1.7195 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 2.8800 -2.6061 -2.5702 35 1 3.6902 -3.7673 -4.5797 36 1 6.4193 -3.8288 -8.4130 37 1 5.7460 -5.3970 -7.9072 38 1 4.7833 -4.3033 -8.9297 39 1 4.7399 -5.0440 -5.3016 40 1 6.4030 -4.4930 -5.6163 41 1 5.2255 -3.3871 -4.8688 42 1 3.3376 -0.1303 -6.8233 43 1 2.5180 1.0284 -4.8163 44 1 3.1032 -0.9579 1.2062 45 1 1.3912 0.9842 2.4931 46 1 2.2339 -0.3328 3.4151 47 1 -2.0763 -3.5957 1.8017 48 1 1.6861 -2.6123 2.3381 49 1 0.5877 -2.3556 0.9155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970753292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:06 Heat of formation + Delta-G solvation = 25.945275 kcal Electronic energy + Delta-G solvation = -29944.285699 eV Core-core repulsion = 25873.875469 eV Total energy + Delta-G solvation = -4070.410230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.77871 -41.15254 -40.14997 -38.83005 -36.78886 -35.95392 -34.16679 -33.02901 -32.32987 -30.85125 -29.52223 -28.86972 -27.67178 -26.37716 -26.02491 -25.01329 -23.74430 -23.06925 -21.63182 -20.86603 -20.32621 -18.87059 -18.52277 -18.24691 -17.64027 -17.10800 -16.83424 -16.78512 -16.49784 -16.07542 -15.83682 -15.66093 -15.53314 -15.29616 -14.88015 -14.55177 -14.44992 -14.27784 -13.96657 -13.75366 -13.54776 -13.46453 -13.31600 -13.22353 -12.98173 -12.87822 -12.76712 -12.68243 -12.51972 -12.40210 -12.05678 -11.95894 -11.67561 -11.47038 -11.26341 -11.02220 -10.81577 -10.70035 -10.25553 -10.06055 -9.93997 -9.72203 -8.74253 -7.82868 -5.11898 -0.59455 0.25776 1.35512 1.47987 1.49070 1.54117 1.87176 2.03440 2.10550 2.51875 2.76862 3.32170 3.39299 3.57424 3.65849 3.73899 3.76759 3.84321 3.97442 4.17550 4.25812 4.30735 4.41539 4.42791 4.49358 4.56111 4.60802 4.74579 4.76314 4.87379 4.89588 4.92044 4.92208 4.94007 5.06603 5.07196 5.13535 5.13807 5.17362 5.25036 5.32833 5.42205 5.52946 5.62339 5.66452 5.69903 5.81895 6.04158 6.19901 6.56969 6.96800 7.01274 7.19854 7.69671 8.70593 9.33623 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.002186 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.316809 B =12804.885650 C =13190.542943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.185 3.815 3 H 0.078 0.922 4 N -0.699 5.699 5 C 0.552 3.448 6 O -0.579 6.579 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.094 4.094 10 C -0.119 4.119 11 C 0.550 3.450 12 O -0.579 6.579 13 N -0.611 5.611 14 C 0.079 3.921 15 C 0.046 3.954 16 C -0.077 4.077 17 C -0.076 4.076 18 C -0.128 4.128 19 C 0.123 3.877 20 N -0.632 5.632 21 C -0.214 4.214 22 H 0.076 0.924 23 C -0.057 4.057 24 N -0.942 5.942 25 Si 0.961 3.039 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.282 1.282 29 C 0.157 3.843 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.245 0.755 48 H 0.020 0.980 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.346 -5.211 -14.847 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.096 0.904 4 N -0.350 5.350 5 C 0.340 3.660 6 O -0.460 6.460 7 C -0.120 4.120 8 C -0.102 4.102 9 C -0.111 4.111 10 C -0.122 4.122 11 C 0.340 3.660 12 O -0.460 6.460 13 N -0.342 5.342 14 C -0.063 4.063 15 C -0.095 4.095 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.147 4.147 19 C -0.003 4.003 20 N -0.358 5.358 21 C -0.342 4.342 22 H 0.094 0.906 23 C -0.250 4.250 24 N -0.591 5.591 25 Si 0.791 3.209 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.208 1.208 29 C 0.031 3.969 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.180 0.820 35 H 0.199 0.801 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.131 0.869 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.626 -4.347 -15.361 24.532 hybrid contribution -1.371 -0.300 0.512 1.493 sum 17.256 -4.647 -14.850 23.235 Atomic orbital electron populations 1.21937 0.95610 1.01924 0.99463 1.20338 0.93315 0.95711 0.82569 0.90442 1.45896 1.65540 1.14648 1.08956 1.18661 0.77303 0.86202 0.83792 1.90743 1.52249 1.17492 1.85469 1.20142 1.02801 0.95591 0.93426 1.21604 0.95883 0.92259 1.00484 1.22123 0.96607 1.02400 0.90006 1.20096 1.03040 0.94980 0.94124 1.18639 0.79028 0.80069 0.88288 1.90759 1.59515 1.66677 1.29039 1.47778 1.42419 1.34193 1.09821 1.21834 0.98609 0.99180 0.86642 1.22826 1.02881 1.01456 0.82315 1.21176 0.96417 0.93532 0.98501 1.21224 0.96394 1.00827 0.91054 1.23125 0.99830 0.98424 0.93357 1.22552 0.87403 0.95690 0.94644 1.45916 1.04665 1.21859 1.63385 1.19045 0.84897 1.03137 1.27112 0.90635 1.25322 1.00999 0.96815 1.01905 1.69928 1.34588 1.09918 1.44648 0.85416 0.81129 0.76385 0.77994 1.21008 1.22292 1.20830 1.22187 0.89553 0.91438 0.93676 0.96223 0.93127 0.91895 0.75002 0.82015 0.80053 0.91797 0.87855 0.92241 0.89547 0.88687 0.88666 0.84504 0.84732 0.86913 0.93571 0.92887 0.94572 0.96207 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.07 71.98 0.58 -4.85 16 2 C 0.18 6.09 2.76 44.99 0.12 6.21 16 3 H 0.08 2.65 7.58 -2.39 -0.02 2.63 16 4 N -0.70 -18.97 5.03 -445.25 -2.24 -21.21 16 5 C 0.55 16.28 7.74 86.84 0.67 16.95 16 6 O -0.58 -21.72 16.00 -3.80 -0.06 -21.79 16 7 C -0.12 -2.67 5.88 -20.04 -0.12 -2.79 16 8 C -0.08 -1.32 9.53 22.49 0.21 -1.10 16 9 C -0.09 -1.25 7.42 22.49 0.17 -1.09 16 10 C -0.12 -2.24 5.47 -20.04 -0.11 -2.35 16 11 C 0.55 11.45 7.44 86.84 0.65 12.10 16 12 O -0.58 -16.85 16.31 -3.78 -0.06 -16.91 16 13 N -0.61 -8.01 3.27 -875.14 -2.87 -10.87 16 14 C 0.08 0.81 10.49 127.77 1.34 2.15 16 15 C 0.05 0.23 8.80 127.77 1.12 1.35 16 16 C -0.08 -1.64 9.58 22.49 0.22 -1.43 16 17 C -0.08 -1.76 9.58 22.49 0.22 -1.55 16 18 C -0.13 -3.99 4.24 -10.37 -0.04 -4.04 16 19 C 0.12 4.45 7.85 83.18 0.65 5.10 16 20 N -0.63 -29.46 2.18 -737.95 -1.61 -31.07 16 21 C -0.21 -11.31 9.60 84.03 0.81 -10.50 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 24 N -0.94 -53.29 11.50 21.65 0.25 -53.04 16 25 Si 0.96 44.95 29.55 68.60 2.03 46.98 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 C 0.16 6.45 6.41 83.27 0.53 6.98 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 2.37 6.33 -2.39 -0.02 2.35 16 32 H 0.06 2.88 5.95 -2.38 -0.01 2.87 16 33 H 0.41 8.71 6.63 -92.70 -0.61 8.10 16 34 H 0.16 1.71 6.39 -2.91 -0.02 1.69 16 35 H 0.18 1.17 4.81 -2.91 -0.01 1.15 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 38 H 0.06 0.87 7.37 -2.38 -0.02 0.85 16 39 H 0.09 0.13 7.44 -2.39 -0.02 0.12 16 40 H 0.09 0.11 8.11 -2.39 -0.02 0.10 16 41 H 0.10 0.50 4.71 -2.39 -0.01 0.49 16 42 H 0.14 2.84 7.95 -2.91 -0.02 2.82 16 43 H 0.13 3.28 7.64 -2.91 -0.02 3.26 16 44 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.25 13.76 8.31 -92.70 -0.77 12.98 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 2.44 5.72 -2.39 -0.01 2.43 16 Total: -1.00 -76.20 391.19 3.30 -72.90 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.37 Total: 16.49 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 7.49 Total: 18.53 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -6.47 Total: -116.20 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.12 Total: -38.69 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.20 3.30 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970753292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.846 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds