Wall clock time and date at job start Wed Apr 1 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 120.00224 * 2 1 4 4 N 1.34783 * 119.99498 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99556 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46849 * 180.02562 * 5 4 2 7 7 C 1.38381 * 119.92838 * 270.02156 * 6 5 4 8 8 C 1.38339 * 120.29695 * 180.02562 * 7 6 5 9 9 C 1.37981 * 120.14100 * 359.67828 * 8 7 6 10 10 C 1.39555 * 119.85131 * 0.57663 * 9 8 7 11 11 C 1.47850 * 120.14462 * 179.72321 * 10 9 8 12 12 O 1.21553 * 120.00185 * 179.72502 * 11 10 9 13 13 N 1.34777 * 119.99831 * 359.44456 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27510 * 13 11 10 15 15 H 1.09001 * 109.46948 * 35.00281 * 14 13 11 16 16 C 1.52997 * 109.47288 * 275.00460 * 14 13 11 17 17 C 1.53001 * 109.47259 * 155.00444 * 14 13 11 18 18 C 1.53946 * 113.73697 * 278.74415 * 17 14 13 19 19 N 1.47813 * 86.03403 * 222.08470 * 18 17 14 20 20 C 1.36940 * 134.45400 * 204.64757 * 19 18 17 21 21 H 1.08003 * 119.99504 * 179.86568 * 20 19 18 22 22 C 1.38809 * 120.00589 * 359.86213 * 20 19 18 23 23 N 1.31621 * 119.99455 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00490 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46803 * 60.00208 * 24 22 20 26 26 H 1.48496 * 109.47163 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47122 * 300.00613 * 24 22 20 28 28 C 1.47579 * 91.05080 * 24.55169 * 19 18 17 29 29 C 1.37936 * 119.93206 * 89.99757 * 6 5 4 30 30 H 1.08996 * 109.47245 * 270.00880 * 1 2 3 31 31 H 1.09002 * 109.46549 * 30.00028 * 1 2 3 32 32 H 1.08998 * 109.47290 * 149.99875 * 1 2 3 33 33 H 0.97002 * 119.99601 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.47659 * 60.00377 * 5 4 2 35 35 H 1.08999 * 109.47238 * 299.99938 * 5 4 2 36 36 H 1.08009 * 119.85380 * 0.02562 * 7 6 5 37 37 H 1.07998 * 119.92886 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.07570 * 180.30132 * 9 8 7 39 39 H 0.97001 * 119.99727 * 0.28406 * 13 11 10 40 40 H 1.08998 * 109.47338 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.46979 * 299.99801 * 16 14 13 42 42 H 1.09000 * 109.47470 * 59.99597 * 16 14 13 43 43 H 1.08991 * 112.94641 * 50.33327 * 17 14 13 44 44 H 1.09001 * 113.77450 * 336.34726 * 18 17 14 45 45 H 1.09005 * 113.77064 * 107.74707 * 18 17 14 46 46 H 0.97004 * 119.99952 * 179.97438 * 23 22 20 47 47 H 1.09010 * 113.76623 * 221.15473 * 28 19 18 48 48 H 1.08998 * 113.87187 * 89.76979 * 28 19 18 49 49 H 1.08007 * 120.06722 * 0.02785 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1480 -2.5882 0.0010 7 6 4.3772 -3.2395 1.2002 8 6 4.8388 -4.5436 1.2090 9 6 5.0673 -5.2057 0.0202 10 6 4.8433 -4.5529 -1.1927 11 6 5.0919 -5.2541 -2.4704 12 8 4.8912 -4.6847 -3.5254 13 7 5.5465 -6.5229 -2.4653 14 6 5.7986 -7.2158 -3.7313 15 1 6.1718 -6.5036 -4.4672 16 6 4.4971 -7.8393 -4.2394 17 6 6.8395 -8.3156 -3.5123 18 6 8.2911 -7.8031 -3.5090 19 7 8.6073 -9.0008 -4.3155 20 6 9.7390 -9.7418 -4.5291 21 1 9.7066 -10.6005 -5.1834 22 6 10.9276 -9.3894 -3.9048 23 7 10.9669 -8.3432 -3.1071 24 14 12.4710 -10.4006 -4.1957 25 1 12.8073 -10.3856 -5.6420 26 1 13.5963 -9.8208 -3.4193 27 1 12.2363 -11.7996 -3.7566 28 6 7.2140 -9.0787 -4.7957 29 6 4.3778 -3.2368 -1.1945 30 1 -0.3633 0.0002 1.0276 31 1 -0.3632 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6957 -2.0073 0.0005 34 1 4.0089 -0.6534 0.8911 35 1 4.0095 -0.6537 -0.8889 36 1 4.1950 -2.7275 2.1336 37 1 5.0153 -5.0464 2.1483 38 1 5.4230 -6.2254 0.0283 39 1 5.7066 -6.9773 -1.6235 40 1 4.6846 -8.3544 -5.1815 41 1 4.1239 -8.5515 -3.5035 42 1 3.7555 -7.0558 -4.3954 43 1 6.6012 -8.9644 -2.6696 44 1 8.4268 -6.8640 -4.0454 45 1 8.7543 -7.8016 -2.5223 46 1 11.7974 -8.0970 -2.6706 47 1 6.8188 -10.0939 -4.8343 48 1 7.0308 -8.5159 -5.7109 49 1 4.1986 -2.7273 -2.1298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970902778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:39 Heat of formation + Delta-G solvation = 0.491427 kcal Electronic energy + Delta-G solvation = -29047.322532 eV Core-core repulsion = 24975.808541 eV Total energy + Delta-G solvation = -4071.513992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.54907 -39.86610 -38.89748 -37.89724 -35.32411 -34.86275 -32.55704 -32.01210 -31.50977 -30.35474 -29.76707 -27.53711 -26.12723 -25.11306 -24.34439 -23.57539 -22.13783 -21.28031 -21.01080 -20.24842 -19.16743 -17.90491 -17.08710 -16.77513 -16.49357 -16.38916 -16.21808 -15.83560 -15.15673 -14.89879 -14.87753 -14.68508 -14.03346 -13.92029 -13.85964 -13.61039 -13.39085 -13.29937 -13.10049 -12.96595 -12.65384 -12.46140 -12.38086 -12.12118 -11.93518 -11.69205 -11.42605 -11.34308 -11.30660 -10.91142 -10.74443 -10.39813 -10.36880 -10.05564 -9.78019 -9.76782 -9.50437 -9.42360 -9.28240 -9.24691 -8.82791 -8.80303 -6.88525 -5.77341 -3.09675 0.56595 0.92982 2.27531 2.63882 3.04888 3.19702 3.38787 3.42943 3.44222 3.68098 4.18550 4.43812 4.45917 4.47200 4.54098 4.77553 4.81388 4.89912 4.93245 4.98509 5.06345 5.24151 5.25307 5.28015 5.28742 5.43524 5.50252 5.53246 5.62221 5.64384 5.76568 5.90950 5.96205 5.99024 6.01851 6.02898 6.11432 6.23066 6.33260 6.38190 6.49803 6.56661 6.63946 6.77278 7.09783 7.21911 7.34623 7.54161 7.60533 7.83286 7.97315 8.27808 9.03884 9.70255 10.59377 11.39652 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.001877 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.762516 B =14916.033376 C =15597.473147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.161 3.839 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.127 4.127 9 C -0.075 4.075 10 C -0.128 4.128 11 C 0.556 3.444 12 O -0.540 6.540 13 N -0.711 5.711 14 C 0.150 3.850 15 H 0.089 0.911 16 C -0.158 4.158 17 C -0.147 4.147 18 C 0.171 3.829 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.130 3.870 29 C -0.042 4.042 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.398 0.602 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.254 0.746 47 H 0.044 0.956 48 H 0.035 0.965 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.058 9.646 11.189 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.425 6.425 4 N -0.380 5.380 5 C 0.038 3.962 6 C -0.123 4.123 7 C -0.098 4.098 8 C -0.145 4.145 9 C -0.094 4.094 10 C -0.131 4.131 11 C 0.342 3.658 12 O -0.418 6.418 13 N -0.361 5.361 14 C 0.046 3.954 15 H 0.107 0.893 16 C -0.216 4.216 17 C -0.167 4.167 18 C 0.045 3.955 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.004 3.996 29 C -0.062 4.062 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.388 10.714 10.446 26.103 hybrid contribution 0.916 -1.214 0.231 1.538 sum -20.472 9.500 10.677 24.967 Atomic orbital electron populations 1.21887 0.91505 1.05045 1.04795 1.20861 0.90686 0.83349 0.75463 1.90741 1.70829 1.31418 1.49526 1.46201 1.07023 1.08997 1.75794 1.20184 0.79912 0.92559 1.03524 1.19773 1.03296 0.95895 0.93309 1.21268 0.96408 0.94598 0.97504 1.21125 1.00192 0.94877 0.98271 1.21467 0.96278 0.99913 0.91750 1.20060 1.04185 0.95532 0.93372 1.18211 0.77331 0.81666 0.88562 1.90768 1.52206 1.66415 1.32411 1.46025 1.66187 1.13574 1.10317 1.21135 0.95016 0.94115 0.85172 0.89327 1.22129 0.97400 1.00596 1.01506 1.23827 0.95957 0.96741 1.00183 1.22299 0.86757 0.89344 0.97074 1.45989 1.05009 1.29845 1.53005 1.18983 0.86123 1.06257 1.23778 0.90322 1.24782 0.97656 0.98158 0.99876 1.69807 1.26258 1.27308 1.33512 0.86202 0.82687 0.79296 0.77590 1.21185 1.21568 1.21096 1.22485 0.86434 0.97084 0.93614 1.21202 0.93805 0.92891 0.98271 0.88826 0.88799 0.90077 0.76254 0.90351 0.90249 0.85481 0.85035 0.85123 0.76638 0.91327 0.92727 0.92770 0.89417 0.95613 0.91040 0.93617 0.93751 0.94745 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.30 36.01 0.37 -0.38 16 2 C 0.51 4.28 7.94 -10.98 -0.09 4.19 16 3 O -0.55 -7.20 17.10 5.56 0.10 -7.11 16 4 N -0.73 -4.94 5.55 -61.48 -0.34 -5.28 16 5 C 0.16 1.29 5.79 -5.20 -0.03 1.26 16 6 C -0.12 -0.99 5.24 -104.68 -0.55 -1.54 16 7 C -0.08 -0.55 9.69 -39.49 -0.38 -0.94 16 8 C -0.13 -0.92 10.03 -39.64 -0.40 -1.32 16 9 C -0.08 -0.66 9.54 -39.18 -0.37 -1.04 16 10 C -0.13 -1.44 5.87 -104.97 -0.62 -2.06 16 11 C 0.56 7.88 7.74 -12.33 -0.10 7.78 16 12 O -0.54 -9.51 16.01 5.32 0.09 -9.43 16 13 N -0.71 -9.35 5.03 -54.75 -0.28 -9.63 16 14 C 0.15 2.25 2.38 -67.93 -0.16 2.09 16 15 H 0.09 1.56 7.41 -51.93 -0.39 1.17 16 16 C -0.16 -2.03 9.31 37.16 0.35 -1.68 16 17 C -0.15 -2.56 3.47 -89.70 -0.31 -2.87 16 18 C 0.17 3.93 7.08 -2.84 -0.02 3.91 16 19 N -0.61 -15.57 3.70 -177.71 -0.66 -16.23 16 20 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.30 11.39 55.49 0.63 -26.67 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 C 0.13 2.57 7.64 -2.97 -0.02 2.55 16 29 C -0.04 -0.44 9.24 -39.19 -0.36 -0.80 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.40 1.85 8.46 -40.82 -0.35 1.50 16 34 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.96 6.41 -52.49 -0.34 0.62 16 39 H 0.40 4.32 6.64 -40.82 -0.27 4.05 16 40 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 45 H 0.07 1.81 7.17 -51.93 -0.37 1.43 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 48 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.14 1.53 7.65 -52.48 -0.40 1.12 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -36.31 409.89 -9.79 -46.10 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.53 Total: 2.58 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.95 Total: 2.38 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.64 Total: -57.81 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.18 Total: -16.53 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.31 -9.79 -46.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970902778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds