Wall clock time and date at job start Wed Apr 1 2020 03:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 120.00224 * 2 1 4 4 N 1.34783 * 119.99498 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99556 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46849 * 180.02562 * 5 4 2 7 7 C 1.38381 * 119.92838 * 270.02156 * 6 5 4 8 8 C 1.38339 * 120.29695 * 180.02562 * 7 6 5 9 9 C 1.37981 * 120.14100 * 359.67828 * 8 7 6 10 10 C 1.39555 * 119.85131 * 0.57663 * 9 8 7 11 11 C 1.47850 * 120.14462 * 179.72321 * 10 9 8 12 12 O 1.21553 * 120.00185 * 179.72502 * 11 10 9 13 13 N 1.34777 * 119.99831 * 359.44456 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27510 * 13 11 10 15 15 H 1.09001 * 109.46948 * 35.00281 * 14 13 11 16 16 C 1.52997 * 109.47288 * 275.00460 * 14 13 11 17 17 C 1.53001 * 109.47259 * 155.00444 * 14 13 11 18 18 C 1.53946 * 113.73697 * 278.74415 * 17 14 13 19 19 N 1.47813 * 86.03403 * 222.08470 * 18 17 14 20 20 C 1.36940 * 134.45400 * 204.64757 * 19 18 17 21 21 H 1.08003 * 119.99504 * 179.86568 * 20 19 18 22 22 C 1.38809 * 120.00589 * 359.86213 * 20 19 18 23 23 N 1.31621 * 119.99455 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00490 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46803 * 60.00208 * 24 22 20 26 26 H 1.48496 * 109.47163 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47122 * 300.00613 * 24 22 20 28 28 C 1.47579 * 91.05080 * 24.55169 * 19 18 17 29 29 C 1.37936 * 119.93206 * 89.99757 * 6 5 4 30 30 H 1.08996 * 109.47245 * 270.00880 * 1 2 3 31 31 H 1.09002 * 109.46549 * 30.00028 * 1 2 3 32 32 H 1.08998 * 109.47290 * 149.99875 * 1 2 3 33 33 H 0.97002 * 119.99601 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.47659 * 60.00377 * 5 4 2 35 35 H 1.08999 * 109.47238 * 299.99938 * 5 4 2 36 36 H 1.08009 * 119.85380 * 0.02562 * 7 6 5 37 37 H 1.07998 * 119.92886 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.07570 * 180.30132 * 9 8 7 39 39 H 0.97001 * 119.99727 * 0.28406 * 13 11 10 40 40 H 1.08998 * 109.47338 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.46979 * 299.99801 * 16 14 13 42 42 H 1.09000 * 109.47470 * 59.99597 * 16 14 13 43 43 H 1.08991 * 112.94641 * 50.33327 * 17 14 13 44 44 H 1.09001 * 113.77450 * 336.34726 * 18 17 14 45 45 H 1.09005 * 113.77064 * 107.74707 * 18 17 14 46 46 H 0.97004 * 119.99952 * 179.97438 * 23 22 20 47 47 H 1.09010 * 113.76623 * 221.15473 * 28 19 18 48 48 H 1.08998 * 113.87187 * 89.76979 * 28 19 18 49 49 H 1.08007 * 120.06722 * 0.02785 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1480 -2.5882 0.0010 7 6 4.3772 -3.2395 1.2002 8 6 4.8388 -4.5436 1.2090 9 6 5.0673 -5.2057 0.0202 10 6 4.8433 -4.5529 -1.1927 11 6 5.0919 -5.2541 -2.4704 12 8 4.8912 -4.6847 -3.5254 13 7 5.5465 -6.5229 -2.4653 14 6 5.7986 -7.2158 -3.7313 15 1 6.1718 -6.5036 -4.4672 16 6 4.4971 -7.8393 -4.2394 17 6 6.8395 -8.3156 -3.5123 18 6 8.2911 -7.8031 -3.5090 19 7 8.6073 -9.0008 -4.3155 20 6 9.7390 -9.7418 -4.5291 21 1 9.7066 -10.6005 -5.1834 22 6 10.9276 -9.3894 -3.9048 23 7 10.9669 -8.3432 -3.1071 24 14 12.4710 -10.4006 -4.1957 25 1 12.8073 -10.3856 -5.6420 26 1 13.5963 -9.8208 -3.4193 27 1 12.2363 -11.7996 -3.7566 28 6 7.2140 -9.0787 -4.7957 29 6 4.3778 -3.2368 -1.1945 30 1 -0.3633 0.0002 1.0276 31 1 -0.3632 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6957 -2.0073 0.0005 34 1 4.0089 -0.6534 0.8911 35 1 4.0095 -0.6537 -0.8889 36 1 4.1950 -2.7275 2.1336 37 1 5.0153 -5.0464 2.1483 38 1 5.4230 -6.2254 0.0283 39 1 5.7066 -6.9773 -1.6235 40 1 4.6846 -8.3544 -5.1815 41 1 4.1239 -8.5515 -3.5035 42 1 3.7555 -7.0558 -4.3954 43 1 6.6012 -8.9644 -2.6696 44 1 8.4268 -6.8640 -4.0454 45 1 8.7543 -7.8016 -2.5223 46 1 11.7974 -8.0970 -2.6706 47 1 6.8188 -10.0939 -4.8343 48 1 7.0308 -8.5159 -5.7109 49 1 4.1986 -2.7273 -2.1298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970902778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:38 Heat of formation + Delta-G solvation = -25.033666 kcal Electronic energy + Delta-G solvation = -29048.429384 eV Core-core repulsion = 24975.808541 eV Total energy + Delta-G solvation = -4072.620843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.47755 -40.70405 -40.02688 -39.20687 -36.25994 -36.01384 -34.22305 -33.09566 -32.30940 -31.35081 -30.41374 -29.34691 -26.82497 -26.61881 -25.77700 -24.92840 -22.83634 -22.70164 -21.66243 -21.38902 -20.58561 -18.90428 -18.67964 -17.76390 -17.54269 -17.16149 -16.98159 -16.88902 -16.62210 -16.10554 -15.86404 -15.69313 -15.64957 -15.05444 -14.72652 -14.69435 -14.55521 -14.21373 -13.95523 -13.87108 -13.54465 -13.40256 -13.28000 -13.19494 -13.09314 -12.92019 -12.89290 -12.68301 -12.63503 -12.55725 -12.10615 -12.01776 -11.74954 -11.51099 -11.26850 -11.10726 -10.95967 -10.84964 -10.20131 -10.16481 -9.93528 -9.85662 -8.92479 -7.90828 -5.24456 -0.18394 0.24267 1.44754 1.48278 1.54321 1.63215 1.79061 2.12802 2.36247 2.47166 2.90601 3.29627 3.36868 3.53132 3.61310 3.78309 3.88062 3.93718 3.97024 4.10755 4.23709 4.27856 4.29569 4.46664 4.50182 4.57789 4.59858 4.67115 4.69731 4.74300 4.81693 4.83123 4.86055 4.97482 5.01341 5.09172 5.10335 5.25265 5.29157 5.33030 5.36006 5.38980 5.45694 5.46782 5.55447 5.65715 5.85847 5.93271 6.54129 6.55174 6.91293 7.20331 7.23354 7.60633 8.56362 9.25794 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.001877 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.762516 B =14916.033376 C =15597.473147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.503 3.497 3 O -0.603 6.603 4 N -0.716 5.716 5 C 0.163 3.837 6 C -0.116 4.116 7 C -0.067 4.067 8 C -0.120 4.120 9 C -0.075 4.075 10 C -0.150 4.150 11 C 0.553 3.447 12 O -0.584 6.584 13 N -0.704 5.704 14 C 0.159 3.841 15 H 0.057 0.943 16 C -0.149 4.149 17 C -0.108 4.108 18 C 0.167 3.833 19 N -0.644 5.644 20 C -0.236 4.236 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.979 3.021 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.130 3.870 29 C -0.055 4.055 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.416 0.584 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.412 0.588 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.000 1.000 45 H 0.044 0.956 46 H 0.248 0.752 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 7.887 13.103 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.369 5.369 5 C 0.040 3.960 6 C -0.116 4.116 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.153 4.153 11 C 0.342 3.658 12 O -0.466 6.466 13 N -0.355 5.355 14 C 0.053 3.947 15 H 0.076 0.924 16 C -0.207 4.207 17 C -0.127 4.127 18 C 0.041 3.959 19 N -0.370 5.370 20 C -0.365 4.365 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.807 3.193 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.198 1.198 28 C 0.004 3.996 29 C -0.075 4.075 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.253 0.747 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.249 0.751 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.283 8.887 12.365 27.820 hybrid contribution 1.462 -0.640 -0.357 1.636 sum -21.821 8.247 12.008 26.236 Atomic orbital electron populations 1.21905 0.88090 1.06077 1.06347 1.21634 0.92339 0.82665 0.74117 1.90716 1.72196 1.33313 1.52232 1.46136 1.06576 1.09416 1.74726 1.20075 0.80750 0.92382 1.02805 1.19704 1.03191 0.95643 0.93092 1.21601 0.94515 0.94553 0.97852 1.21482 0.98763 0.94803 0.98753 1.21677 0.95714 1.00642 0.91305 1.19876 1.06690 0.95919 0.92788 1.18701 0.76368 0.81556 0.89218 1.90739 1.54254 1.67320 1.34254 1.45895 1.65803 1.13503 1.10267 1.20863 0.95557 0.92769 0.85480 0.92438 1.22042 0.95540 1.00737 1.02355 1.23443 0.92976 0.96601 0.99728 1.22185 0.90619 0.88096 0.94979 1.46427 1.06411 1.30167 1.54034 1.19426 0.87341 1.06596 1.23119 0.89741 1.25645 1.00784 0.99563 1.00189 1.70007 1.26453 1.29081 1.34792 0.85144 0.78598 0.78168 0.77382 1.20651 1.22150 1.19773 1.22684 0.83478 0.98716 0.94675 1.21122 0.94882 0.92954 0.98496 0.86864 0.89144 0.87653 0.74703 0.89962 0.92201 0.82712 0.81976 0.83620 0.75070 0.90705 0.90435 0.93249 0.87343 0.98238 0.93793 0.94335 0.91511 0.94078 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.30 71.24 0.73 -0.40 16 2 C 0.50 8.19 7.94 87.66 0.70 8.88 16 3 O -0.60 -16.29 17.10 -3.01 -0.05 -16.34 16 4 N -0.72 -9.06 5.55 -466.80 -2.59 -11.65 16 5 C 0.16 2.57 5.79 85.63 0.50 3.07 16 6 C -0.12 -1.77 5.24 -19.90 -0.10 -1.87 16 7 C -0.07 -0.73 9.69 22.33 0.22 -0.52 16 8 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 9 C -0.07 -1.16 9.54 22.53 0.21 -0.95 16 10 C -0.15 -3.33 5.87 -20.09 -0.12 -3.45 16 11 C 0.55 16.02 7.74 86.79 0.67 16.69 16 12 O -0.58 -21.67 16.01 -3.88 -0.06 -21.74 16 13 N -0.70 -18.20 5.03 -445.41 -2.24 -20.44 16 14 C 0.16 4.69 2.38 44.99 0.11 4.80 16 15 H 0.06 2.10 7.41 -2.39 -0.02 2.08 16 16 C -0.15 -3.53 9.31 71.98 0.67 -2.86 16 17 C -0.11 -3.65 3.47 -10.13 -0.04 -3.68 16 18 C 0.17 7.89 7.08 86.44 0.61 8.50 16 19 N -0.64 -32.94 3.70 -716.15 -2.65 -35.59 16 20 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16 21 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 22 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 23 N -0.95 -58.03 11.39 21.65 0.25 -57.78 16 24 Si 0.98 45.84 29.55 68.60 2.03 47.86 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 28 C 0.13 4.96 7.64 86.48 0.66 5.62 16 29 C -0.05 -1.16 9.24 22.53 0.21 -0.95 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.42 3.07 8.46 -92.71 -0.78 2.28 16 34 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 35 H 0.06 1.18 8.08 -2.39 -0.02 1.17 16 36 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.15 1.75 6.41 -2.91 -0.02 1.73 16 39 H 0.41 8.31 6.64 -92.71 -0.62 7.69 16 40 H 0.07 1.69 7.52 -2.39 -0.02 1.67 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 16 45 H 0.04 2.30 7.17 -2.38 -0.02 2.28 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 49 H 0.12 2.88 7.65 -2.91 -0.02 2.86 16 Total: -1.00 -83.18 409.89 0.87 -82.31 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.43 Total: 17.50 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.62 Total: 15.86 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -7.24 Total: -125.46 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.11 Total: -38.07 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -83.18 0.87 -82.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970902778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.277 kcal (2) G-P(sol) polarization free energy of solvation -83.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds