Wall clock time and date at job start Wed Apr 1 2020 03:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47453 * 2 1 4 4 N 1.46499 * 109.47016 * 240.00252 * 2 1 3 5 5 C 1.34775 * 120.00329 * 85.00146 * 4 2 1 6 6 O 1.21582 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.47617 * 120.00174 * 180.02562 * 5 4 2 8 8 C 1.40289 * 120.49565 * 179.97438 * 7 5 4 9 9 C 1.37957 * 118.35284 * 180.02562 * 8 7 5 10 10 C 1.39159 * 119.26652 * 0.02562 * 9 8 7 11 11 O 1.35500 * 119.53014 * 179.97438 * 10 9 8 12 12 C 1.42897 * 117.00656 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47351 * 180.02562 * 12 11 10 14 14 C 1.53001 * 117.51780 * 116.28382 * 13 12 11 15 15 C 1.52992 * 60.00171 * 107.47862 * 14 13 12 16 16 N 1.32414 * 120.95059 * 0.27461 * 10 9 8 17 17 C 1.31670 * 121.79253 * 359.43192 * 16 10 9 18 18 C 1.52996 * 109.47145 * 120.00362 * 2 1 3 19 19 C 1.53944 * 113.74113 * 282.19327 * 18 2 1 20 20 N 1.47812 * 86.04004 * 222.08830 * 19 18 2 21 21 C 1.36939 * 134.45613 * 204.65448 * 20 19 18 22 22 H 1.08001 * 119.99656 * 182.58119 * 21 20 19 23 23 C 1.38813 * 120.00030 * 2.57117 * 21 20 19 24 24 N 1.31610 * 120.00180 * 353.42234 * 23 21 20 25 25 Si 1.86804 * 119.99697 * 173.41924 * 23 21 20 26 26 H 1.48504 * 109.46932 * 94.97841 * 25 23 21 27 27 H 1.48498 * 109.47046 * 214.97047 * 25 23 21 28 28 H 1.48493 * 109.47248 * 334.97466 * 25 23 21 29 29 C 1.47582 * 91.05064 * 24.54728 * 20 19 18 30 30 H 1.09000 * 109.47325 * 184.48769 * 1 2 3 31 31 H 1.09003 * 109.47099 * 304.48768 * 1 2 3 32 32 H 1.09003 * 109.47258 * 64.48239 * 1 2 3 33 33 H 0.97004 * 119.99760 * 265.00018 * 4 2 1 34 34 H 1.07998 * 120.82427 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.36591 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47239 * 59.99806 * 12 11 10 37 37 H 1.09005 * 109.46901 * 300.00287 * 12 11 10 38 38 H 1.08994 * 115.54952 * 330.58545 * 13 12 11 39 39 H 1.09002 * 117.50042 * 214.97201 * 14 13 12 40 40 H 1.09000 * 117.49659 * 359.97438 * 14 13 12 41 41 H 1.08997 * 117.50218 * 252.51217 * 15 14 13 42 42 H 1.09004 * 117.50192 * 107.48714 * 15 14 13 43 43 H 1.08001 * 119.68214 * 180.26635 * 17 16 10 44 44 H 1.08991 * 112.94766 * 53.78807 * 18 2 1 45 45 H 1.09005 * 113.77122 * 336.34990 * 19 18 2 46 46 H 1.09003 * 113.77040 * 107.74461 * 19 18 2 47 47 H 0.97002 * 120.00337 * 179.97438 * 24 23 21 48 48 H 1.09005 * 113.76922 * 221.15327 * 29 20 19 49 49 H 1.08997 * 113.86701 * 89.77013 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1614 -2.4119 7 6 2.6385 -0.7142 -3.5626 8 6 2.7760 -0.0246 -4.7765 9 6 3.2388 -0.7185 -5.8754 10 6 3.5510 -2.0684 -5.7457 11 8 4.0054 -2.7552 -6.8217 12 6 4.3089 -4.1380 -6.6279 13 6 4.8047 -4.7406 -7.9439 14 6 6.2434 -5.2597 -7.9861 15 6 5.0742 -6.2464 -7.9742 16 7 3.4048 -2.6928 -4.5872 17 6 2.9718 -2.0681 -3.5121 18 6 2.0400 -0.7213 1.2492 19 6 1.9659 0.1297 2.5299 20 7 3.3033 -0.4146 2.8461 21 6 4.0104 -0.6100 4.0025 22 1 5.0168 -0.9997 3.9607 23 6 3.4336 -0.3071 5.2282 24 7 2.2604 0.2874 5.2745 25 14 4.3229 -0.7433 6.8121 26 1 5.0970 0.4325 7.2851 27 1 3.3303 -1.1309 7.8464 28 1 5.2481 -1.8779 6.5639 29 6 3.5693 -0.6652 1.4163 30 1 -0.3634 -1.0245 0.0804 31 1 -0.3633 0.5819 0.8471 32 1 -0.3634 0.4427 -0.9274 33 1 2.2489 -1.6318 -1.1526 34 1 2.5250 1.0233 -4.8492 35 1 3.3574 -0.2195 -6.8259 36 1 3.4121 -4.6647 -6.3018 37 1 5.0846 -4.2368 -5.8685 38 1 4.4084 -4.2819 -8.8498 39 1 6.7936 -5.1425 -8.9198 40 1 6.8371 -5.1715 -7.0763 41 1 4.8986 -6.8076 -7.0564 42 1 4.8551 -6.7784 -8.9000 43 1 2.8694 -2.6099 -2.5835 44 1 1.6226 -1.7218 1.3623 45 1 1.9615 1.2038 2.3441 46 1 1.1864 -0.1865 3.2231 47 1 1.8572 0.4988 6.1311 48 1 4.0677 -1.6151 1.2220 49 1 4.0371 0.1737 0.9011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970923601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:32 Heat of formation + Delta-G solvation = 42.201601 kcal Electronic energy + Delta-G solvation = -28955.422520 eV Core-core repulsion = 24885.717217 eV Total energy + Delta-G solvation = -4069.705303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.15221 -39.82474 -38.65212 -37.92209 -37.07109 -34.89675 -32.84749 -32.34999 -31.58493 -29.97406 -27.96097 -27.47715 -25.01782 -24.48651 -24.07531 -23.54163 -22.88569 -21.46880 -21.13844 -20.48619 -19.32221 -18.91836 -17.62106 -17.47642 -16.76766 -16.58947 -16.03276 -15.64083 -15.21448 -14.95323 -14.85371 -14.72988 -14.34698 -14.05753 -13.76462 -13.67695 -13.61700 -13.38035 -13.15277 -12.96028 -12.31906 -12.14145 -12.05796 -11.86271 -11.70115 -11.58630 -11.38855 -11.25388 -11.01492 -10.91259 -10.67453 -10.48320 -10.38882 -10.33772 -10.29793 -9.95812 -9.82494 -9.65099 -9.44080 -9.01316 -8.79033 -8.72675 -6.88303 -5.77388 -3.08175 0.45229 0.86233 2.46605 2.77433 3.17071 3.28029 3.39068 3.44205 3.46365 3.60746 3.80145 4.21368 4.36337 4.42069 4.45299 4.49215 4.55717 4.72890 4.74695 4.88657 5.04808 5.10915 5.13693 5.14633 5.17439 5.25181 5.38253 5.39592 5.45865 5.54043 5.60164 5.62860 5.66195 5.79324 5.81694 5.97422 6.00599 6.07025 6.26914 6.35595 6.44410 6.56354 6.62434 6.78493 6.81286 7.21865 7.36892 7.37348 7.54638 7.57443 7.98164 8.24097 9.04735 9.71242 10.60431 11.40302 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.001916 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.329217 B =14607.526054 C =16118.313333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.566 3.434 6 O -0.539 6.539 7 C -0.221 4.221 8 C 0.017 3.983 9 C -0.197 4.197 10 C 0.341 3.659 11 O -0.300 6.300 12 C 0.101 3.899 13 C -0.162 4.162 14 C -0.176 4.176 15 C -0.168 4.168 16 N -0.544 5.544 17 C 0.179 3.821 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.254 0.746 48 H 0.041 0.959 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -9.405 -27.600 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.352 3.648 6 O -0.418 6.418 7 C -0.227 4.227 8 C -0.009 4.009 9 C -0.218 4.218 10 C 0.163 3.837 11 O -0.207 6.207 12 C 0.026 3.974 13 C -0.180 4.180 14 C -0.213 4.213 15 C -0.205 4.205 16 N -0.267 5.267 17 C 0.021 3.979 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.231 0.769 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.182 0.818 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.786 -9.374 -27.499 29.064 hybrid contribution 0.478 0.104 1.012 1.124 sum 1.264 -9.270 -26.487 28.091 Atomic orbital electron populations 1.22111 0.95295 1.01976 1.02215 1.21156 0.93876 0.97523 0.82778 0.89254 1.46061 1.66639 1.13936 1.09708 1.17854 0.77783 0.86460 0.82722 1.90783 1.50671 1.15376 1.84923 1.20910 1.09730 0.95927 0.96141 1.21548 0.89130 1.00642 0.89593 1.21043 1.07225 0.92078 1.01416 1.20034 0.89068 0.89152 0.85455 1.86178 1.78158 1.24855 1.31466 1.22192 1.00962 0.78251 0.95972 1.22162 1.00070 0.96893 0.98852 1.23121 0.90873 1.03499 1.03817 1.22995 1.02584 0.91033 1.03890 1.67345 1.20168 1.39802 0.99435 1.22658 0.89199 0.90541 0.95456 1.23856 0.97630 1.00757 0.94499 1.22234 0.89635 0.93962 0.89171 1.46037 1.16074 1.72068 0.99634 1.19027 0.96896 1.36636 0.82557 0.90328 1.24775 0.97310 1.00887 0.97433 1.69817 1.17205 1.45531 1.24210 0.86125 0.78397 0.78028 0.83355 1.21707 1.21586 1.20595 1.22537 0.93057 0.97698 0.86818 0.92680 0.91048 0.92785 0.76881 0.82720 0.83401 0.90821 0.91068 0.86646 0.88391 0.88397 0.88300 0.88133 0.81839 0.89258 0.95349 0.90818 0.93638 0.94117 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.43 37.16 0.35 -1.80 16 2 C 0.15 2.25 2.28 -67.93 -0.16 2.09 16 3 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16 4 N -0.71 -8.87 4.90 -54.82 -0.27 -9.13 16 5 C 0.57 7.62 7.74 -12.43 -0.10 7.53 16 6 O -0.54 -9.13 16.08 5.29 0.09 -9.04 16 7 C -0.22 -2.45 5.89 -104.82 -0.62 -3.07 16 8 C 0.02 0.17 9.70 -38.91 -0.38 -0.21 16 9 C -0.20 -1.80 10.02 -39.34 -0.39 -2.19 16 10 C 0.34 3.52 7.49 -16.96 -0.13 3.39 16 11 O -0.30 -2.91 10.10 -18.19 -0.18 -3.09 16 12 C 0.10 0.80 5.58 37.16 0.21 1.01 16 13 C -0.16 -1.03 6.06 -90.62 -0.55 -1.58 16 14 C -0.18 -0.97 10.18 -26.73 -0.27 -1.24 16 15 C -0.17 -0.85 10.25 -26.73 -0.27 -1.12 16 16 N -0.54 -5.74 9.18 -12.97 -0.12 -5.86 16 17 C 0.18 1.76 10.71 -17.14 -0.18 1.58 16 18 C -0.15 -2.56 3.35 -89.69 -0.30 -2.86 16 19 C 0.18 4.02 7.02 -2.84 -0.02 4.00 16 20 N -0.61 -15.57 3.70 -177.67 -0.66 -16.23 16 21 C -0.22 -6.28 10.69 -15.06 -0.16 -6.45 16 22 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.22 11.43 55.49 0.63 -26.59 16 25 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.12 2.48 8.38 -2.96 -0.02 2.46 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.91 6.66 -40.82 -0.27 3.64 16 34 H 0.16 1.44 7.73 -52.49 -0.41 1.04 16 35 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 38 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.16 1.21 6.41 -52.49 -0.34 0.87 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.07 1.85 7.20 -51.93 -0.37 1.48 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 409.62 15.07 6.17 6.17 Total: -1.00 -33.63 409.62 -10.09 -43.71 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.63 Total: 1.71 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.09 Total: 1.23 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.41 Total: -57.81 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.10 Total: -12.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.63 -10.09 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970923601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.914 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds