Wall clock time and date at job start Wed Apr 1 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47453 * 2 1 4 4 N 1.46499 * 109.47016 * 240.00252 * 2 1 3 5 5 C 1.34775 * 120.00329 * 85.00146 * 4 2 1 6 6 O 1.21582 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.47617 * 120.00174 * 180.02562 * 5 4 2 8 8 C 1.40289 * 120.49565 * 179.97438 * 7 5 4 9 9 C 1.37957 * 118.35284 * 180.02562 * 8 7 5 10 10 C 1.39159 * 119.26652 * 0.02562 * 9 8 7 11 11 O 1.35500 * 119.53014 * 179.97438 * 10 9 8 12 12 C 1.42897 * 117.00656 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47351 * 180.02562 * 12 11 10 14 14 C 1.53001 * 117.51780 * 116.28382 * 13 12 11 15 15 C 1.52992 * 60.00171 * 107.47862 * 14 13 12 16 16 N 1.32414 * 120.95059 * 0.27461 * 10 9 8 17 17 C 1.31670 * 121.79253 * 359.43192 * 16 10 9 18 18 C 1.52996 * 109.47145 * 120.00362 * 2 1 3 19 19 C 1.53944 * 113.74113 * 282.19327 * 18 2 1 20 20 N 1.47812 * 86.04004 * 222.08830 * 19 18 2 21 21 C 1.36939 * 134.45613 * 204.65448 * 20 19 18 22 22 H 1.08001 * 119.99656 * 182.58119 * 21 20 19 23 23 C 1.38813 * 120.00030 * 2.57117 * 21 20 19 24 24 N 1.31610 * 120.00180 * 353.42234 * 23 21 20 25 25 Si 1.86804 * 119.99697 * 173.41924 * 23 21 20 26 26 H 1.48504 * 109.46932 * 94.97841 * 25 23 21 27 27 H 1.48498 * 109.47046 * 214.97047 * 25 23 21 28 28 H 1.48493 * 109.47248 * 334.97466 * 25 23 21 29 29 C 1.47582 * 91.05064 * 24.54728 * 20 19 18 30 30 H 1.09000 * 109.47325 * 184.48769 * 1 2 3 31 31 H 1.09003 * 109.47099 * 304.48768 * 1 2 3 32 32 H 1.09003 * 109.47258 * 64.48239 * 1 2 3 33 33 H 0.97004 * 119.99760 * 265.00018 * 4 2 1 34 34 H 1.07998 * 120.82427 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.36591 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47239 * 59.99806 * 12 11 10 37 37 H 1.09005 * 109.46901 * 300.00287 * 12 11 10 38 38 H 1.08994 * 115.54952 * 330.58545 * 13 12 11 39 39 H 1.09002 * 117.50042 * 214.97201 * 14 13 12 40 40 H 1.09000 * 117.49659 * 359.97438 * 14 13 12 41 41 H 1.08997 * 117.50218 * 252.51217 * 15 14 13 42 42 H 1.09004 * 117.50192 * 107.48714 * 15 14 13 43 43 H 1.08001 * 119.68214 * 180.26635 * 17 16 10 44 44 H 1.08991 * 112.94766 * 53.78807 * 18 2 1 45 45 H 1.09005 * 113.77122 * 336.34990 * 19 18 2 46 46 H 1.09003 * 113.77040 * 107.74461 * 19 18 2 47 47 H 0.97002 * 120.00337 * 179.97438 * 24 23 21 48 48 H 1.09005 * 113.76922 * 221.15327 * 29 20 19 49 49 H 1.08997 * 113.86701 * 89.77013 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1614 -2.4119 7 6 2.6385 -0.7142 -3.5626 8 6 2.7760 -0.0246 -4.7765 9 6 3.2388 -0.7185 -5.8754 10 6 3.5510 -2.0684 -5.7457 11 8 4.0054 -2.7552 -6.8217 12 6 4.3089 -4.1380 -6.6279 13 6 4.8047 -4.7406 -7.9439 14 6 6.2434 -5.2597 -7.9861 15 6 5.0742 -6.2464 -7.9742 16 7 3.4048 -2.6928 -4.5872 17 6 2.9718 -2.0681 -3.5121 18 6 2.0400 -0.7213 1.2492 19 6 1.9659 0.1297 2.5299 20 7 3.3033 -0.4146 2.8461 21 6 4.0104 -0.6100 4.0025 22 1 5.0168 -0.9997 3.9607 23 6 3.4336 -0.3071 5.2282 24 7 2.2604 0.2874 5.2745 25 14 4.3229 -0.7433 6.8121 26 1 5.0970 0.4325 7.2851 27 1 3.3303 -1.1309 7.8464 28 1 5.2481 -1.8779 6.5639 29 6 3.5693 -0.6652 1.4163 30 1 -0.3634 -1.0245 0.0804 31 1 -0.3633 0.5819 0.8471 32 1 -0.3634 0.4427 -0.9274 33 1 2.2489 -1.6318 -1.1526 34 1 2.5250 1.0233 -4.8492 35 1 3.3574 -0.2195 -6.8259 36 1 3.4121 -4.6647 -6.3018 37 1 5.0846 -4.2368 -5.8685 38 1 4.4084 -4.2819 -8.8498 39 1 6.7936 -5.1425 -8.9198 40 1 6.8371 -5.1715 -7.0763 41 1 4.8986 -6.8076 -7.0564 42 1 4.8551 -6.7784 -8.9000 43 1 2.8694 -2.6099 -2.5835 44 1 1.6226 -1.7218 1.3623 45 1 1.9615 1.2038 2.3441 46 1 1.1864 -0.1865 3.2231 47 1 1.8572 0.4988 6.1311 48 1 4.0677 -1.6151 1.2220 49 1 4.0371 0.1737 0.9011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970923601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:30 Heat of formation + Delta-G solvation = 20.423721 kcal Electronic energy + Delta-G solvation = -28956.366880 eV Core-core repulsion = 24885.717217 eV Total energy + Delta-G solvation = -4070.649662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.96526 -40.90248 -39.76740 -39.04799 -37.65049 -36.23540 -34.18784 -33.63070 -32.76157 -31.03755 -29.31638 -28.59367 -26.59870 -25.82956 -25.22019 -24.53554 -23.28138 -22.84252 -21.72199 -21.53712 -20.84625 -19.66962 -18.84488 -18.60128 -18.22757 -17.32372 -17.07431 -16.79161 -16.40006 -16.08402 -15.89525 -15.79674 -15.63123 -15.19537 -14.95292 -14.70040 -14.48874 -14.32160 -14.22377 -14.03849 -13.73563 -13.40124 -13.21146 -13.06486 -12.96841 -12.67278 -12.61929 -12.38278 -12.35158 -12.25686 -12.04325 -11.79399 -11.60308 -11.44021 -11.25169 -11.15675 -11.08057 -10.95382 -10.80938 -10.64643 -10.11734 -9.61759 -8.91708 -7.90651 -5.22615 -0.37140 0.11785 1.46093 1.47351 1.56904 1.79954 1.81249 2.10026 2.48022 2.75747 2.83423 3.09215 3.30876 3.39686 3.58953 3.70303 3.75203 3.81412 3.90680 3.96069 3.98474 4.01244 4.18668 4.23202 4.29643 4.45477 4.47436 4.56470 4.58975 4.60754 4.74052 4.77718 4.79382 4.85927 4.88736 4.97390 4.99977 5.02543 5.12944 5.15416 5.22714 5.26535 5.29543 5.33681 5.51632 5.56539 5.67457 5.94856 6.09290 6.54393 6.62086 6.92933 7.21335 7.61761 8.57721 9.26858 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.001916 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.329217 B =14607.526054 C =16118.313333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.063 0.937 4 N -0.702 5.702 5 C 0.569 3.431 6 O -0.578 6.578 7 C -0.233 4.233 8 C 0.014 3.986 9 C -0.193 4.193 10 C 0.333 3.667 11 O -0.305 6.305 12 C 0.101 3.899 13 C -0.172 4.172 14 C -0.178 4.178 15 C -0.160 4.160 16 N -0.554 5.554 17 C 0.185 3.815 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.082 0.918 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.126 3.874 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.188 0.812 44 H 0.109 0.891 45 H 0.011 0.989 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.063 0.937 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -11.406 -29.175 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.082 0.918 4 N -0.353 5.353 5 C 0.357 3.643 6 O -0.459 6.459 7 C -0.239 4.239 8 C -0.012 4.012 9 C -0.213 4.213 10 C 0.155 3.845 11 O -0.212 6.212 12 C 0.026 3.974 13 C -0.191 4.191 14 C -0.215 4.215 15 C -0.196 4.196 16 N -0.277 5.277 17 C 0.027 3.973 18 C -0.128 4.128 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.001 3.999 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.205 0.795 44 H 0.127 0.873 45 H 0.029 0.971 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.500 -11.420 -29.121 31.317 hybrid contribution 0.314 0.725 1.401 1.608 sum 1.814 -10.696 -27.721 29.768 Atomic orbital electron populations 1.22048 0.93950 1.03124 1.01884 1.20783 0.94771 0.95978 0.82683 0.91838 1.45823 1.66302 1.14562 1.08649 1.18138 0.76924 0.85957 0.83286 1.90769 1.52469 1.17163 1.85538 1.20739 1.11229 0.96524 0.95381 1.21667 0.88944 1.00937 0.89605 1.21230 1.06343 0.91709 1.02007 1.20304 0.88898 0.89686 0.85600 1.86181 1.77940 1.25688 1.31373 1.22276 1.00782 0.77467 0.96828 1.22155 1.00920 0.97948 0.98038 1.23194 0.90644 1.03480 1.04193 1.23091 1.01600 0.90268 1.04678 1.67398 1.20609 1.40026 0.99712 1.22966 0.88114 0.90050 0.96124 1.23451 0.95948 1.00478 0.92924 1.22148 0.88194 0.93785 0.91477 1.46479 1.17026 1.72324 1.01192 1.19432 0.97278 1.35778 0.83963 0.89981 1.25620 0.98318 1.01428 1.00636 1.70004 1.18751 1.46969 1.24440 0.85080 0.77273 0.77905 0.79169 1.21784 1.21864 1.19078 1.22692 0.94913 0.98499 0.83746 0.90673 0.91868 0.92764 0.75009 0.82398 0.81267 0.90955 0.91489 0.86611 0.87551 0.88596 0.87977 0.86910 0.79512 0.87341 0.97086 0.93589 0.94233 0.91858 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.43 71.98 0.68 -3.27 16 2 C 0.16 4.70 2.28 44.99 0.10 4.80 16 3 H 0.06 2.22 7.49 -2.38 -0.02 2.20 16 4 N -0.70 -16.11 4.90 -445.63 -2.19 -18.30 16 5 C 0.57 14.67 7.74 86.72 0.67 15.34 16 6 O -0.58 -19.46 16.08 -3.97 -0.06 -19.52 16 7 C -0.23 -4.79 5.89 -19.99 -0.12 -4.91 16 8 C 0.01 0.26 9.70 22.70 0.22 0.48 16 9 C -0.19 -3.19 10.02 22.42 0.22 -2.96 16 10 C 0.33 6.33 7.49 84.83 0.64 6.97 16 11 O -0.31 -5.50 10.10 -88.01 -0.89 -6.38 16 12 C 0.10 1.48 5.58 71.98 0.40 1.88 16 13 C -0.17 -1.96 6.06 -10.79 -0.07 -2.02 16 14 C -0.18 -1.69 10.18 30.59 0.31 -1.38 16 15 C -0.16 -1.31 10.25 30.59 0.31 -1.00 16 16 N -0.55 -10.65 9.18 -307.82 -2.83 -13.48 16 17 C 0.19 3.23 10.71 85.03 0.91 4.14 16 18 C -0.11 -3.63 3.35 -10.13 -0.03 -3.66 16 19 C 0.17 7.92 7.02 86.44 0.61 8.53 16 20 N -0.64 -32.83 3.70 -716.03 -2.65 -35.48 16 21 C -0.24 -13.30 10.69 84.03 0.90 -12.40 16 22 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.95 -57.69 11.43 21.65 0.25 -57.44 16 25 Si 0.98 45.82 29.56 68.60 2.03 47.84 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 C 0.13 4.85 8.38 86.49 0.73 5.57 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.41 6.87 6.66 -92.71 -0.62 6.26 16 34 H 0.16 2.82 7.73 -2.91 -0.02 2.80 16 35 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.07 1.02 7.84 -2.38 -0.02 1.00 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.94 8.03 -2.39 -0.02 0.92 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.19 2.18 6.41 -2.91 -0.02 2.16 16 44 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.01 0.56 8.04 -2.38 -0.02 0.54 16 46 H 0.05 2.38 7.20 -2.39 -0.02 2.37 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 49 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -73.48 409.62 0.95 -72.53 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.34 Total: 17.51 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.95 Total: 12.73 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -7.41 Total: -124.70 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.95 Total: -25.90 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.48 0.95 -72.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970923601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.950 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds