Wall clock time and date at job start Wed Apr 1 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99607 * 2 1 4 4 N 1.34770 * 120.00227 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99942 * 4.86764 * 4 2 1 6 6 C 1.39443 * 120.00371 * 184.86243 * 4 2 1 7 7 C 1.39126 * 119.92884 * 172.50416 * 6 4 2 8 8 C 1.37672 * 120.07345 * 179.97438 * 7 6 4 9 9 C 1.39743 * 119.92650 * 359.97438 * 8 7 6 10 10 C 1.47601 * 120.07628 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99230 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00103 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99986 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47090 * 325.00661 * 13 12 10 15 15 C 1.53001 * 109.47009 * 85.00491 * 13 12 10 16 16 C 1.53001 * 109.47308 * 205.00212 * 13 12 10 17 17 C 1.53503 * 114.20642 * 179.97438 * 16 13 12 18 18 N 1.47068 * 87.98171 * 87.72010 * 17 16 13 19 19 C 1.36942 * 136.05723 * 207.08922 * 18 17 16 20 20 H 1.08000 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99710 * 180.27252 * 19 18 17 22 22 N 1.31622 * 120.00432 * 359.72593 * 21 19 18 23 23 Si 1.86808 * 119.99817 * 179.71974 * 21 19 18 24 24 H 1.48505 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47071 * 119.99924 * 23 21 19 26 26 H 1.48497 * 109.47005 * 240.00137 * 23 21 19 27 27 C 1.47067 * 87.88728 * 27.34033 * 18 17 16 28 28 C 1.39759 * 119.85348 * 0.25180 * 9 8 7 29 29 C 1.37673 * 119.92048 * 359.49233 * 28 9 8 30 30 H 1.09000 * 109.47221 * 264.71397 * 1 2 3 31 31 H 1.09001 * 109.47005 * 24.72046 * 1 2 3 32 32 H 1.09002 * 109.46454 * 144.72083 * 1 2 3 33 33 H 1.09002 * 109.47397 * 274.99823 * 5 4 2 34 34 H 1.09001 * 109.47402 * 35.00352 * 5 4 2 35 35 H 1.08998 * 109.47377 * 155.00061 * 5 4 2 36 36 H 1.08004 * 119.96641 * 359.95302 * 7 6 4 37 37 H 1.08001 * 120.03843 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00351 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.47049 * 180.02562 * 15 13 12 40 40 H 1.09007 * 109.46991 * 299.99560 * 15 13 12 41 41 H 1.08996 * 109.47287 * 59.99678 * 15 13 12 42 42 H 1.08999 * 113.28302 * 46.93572 * 16 13 12 43 43 H 1.09000 * 113.46550 * 332.94142 * 17 16 13 44 44 H 1.09000 * 113.52052 * 202.50583 * 17 16 13 45 45 H 0.96997 * 120.00248 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.46381 * 87.43939 * 27 18 17 47 47 H 1.08997 * 113.46925 * 217.88112 * 27 18 17 48 48 H 1.07996 * 120.03326 * 179.74273 * 28 9 8 49 49 H 1.07998 * 119.95555 * 180.24879 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4524 -2.4336 -0.1066 6 6 3.5716 -1.1693 0.1029 7 6 4.2541 -2.3713 0.2604 8 6 5.6272 -2.3770 0.3613 9 6 6.3353 -1.1736 0.3047 10 6 7.8073 -1.1757 0.4130 11 8 8.4050 -2.2254 0.5521 12 7 8.4888 -0.0143 0.3577 13 6 9.9498 -0.0164 0.4658 14 1 10.2621 -0.8022 1.1537 15 6 10.5628 -0.2721 -0.9125 16 6 10.4243 1.3399 0.9914 17 6 11.9469 1.4566 1.1477 18 7 12.0050 1.8956 -0.2548 19 6 12.9294 1.8519 -1.2642 20 1 13.8959 1.4017 -1.0921 21 6 12.6263 2.3917 -2.5066 22 7 11.4486 2.9407 -2.7161 23 14 13.8902 2.3391 -3.8812 24 1 15.1247 1.6731 -3.3934 25 1 13.3393 1.5782 -5.0313 26 1 14.2111 3.7235 -4.3118 27 6 10.6358 2.4079 -0.0943 28 6 5.6462 0.0326 0.1511 29 6 4.2735 0.0306 0.0456 30 1 -0.3633 -0.0947 1.0233 31 1 -0.3633 0.9335 -0.4298 32 1 -0.3632 -0.8390 -0.5936 33 1 1.1191 -2.7459 0.8831 34 1 0.5874 -2.3014 -0.7564 35 1 2.1088 -3.1960 -0.5261 36 1 3.7063 -3.3011 0.3040 37 1 6.1564 -3.3104 0.4840 38 1 8.0119 0.8231 0.2471 39 1 11.6498 -0.2741 -0.8320 40 1 10.2247 -1.2384 -1.2870 41 1 10.2504 0.5136 -1.6005 42 1 9.8586 1.6891 1.8551 43 1 12.4397 0.5005 1.3240 44 1 12.2537 2.2258 1.8563 45 1 11.2367 3.3176 -3.5844 46 1 10.5961 3.4282 0.2871 47 1 10.0117 2.2622 -0.9759 48 1 6.1903 0.9646 0.1112 49 1 3.7408 0.9620 -0.0771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970954524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:23 Heat of formation + Delta-G solvation = 48.249550 kcal Electronic energy + Delta-G solvation = -29998.029433 eV Core-core repulsion = 25928.586389 eV Total energy + Delta-G solvation = -4069.443044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.27624 -39.90729 -38.74450 -37.80035 -36.07908 -34.37762 -32.20877 -31.74958 -31.19211 -29.86858 -28.72444 -27.63298 -27.51789 -24.66602 -24.44896 -23.60810 -22.54980 -21.55779 -20.45166 -19.84633 -18.82807 -17.89230 -17.44832 -17.06628 -16.70896 -16.48983 -15.62633 -15.13032 -14.88896 -14.77865 -14.59934 -14.35206 -14.28717 -14.06408 -13.75907 -13.64640 -13.50349 -13.20890 -12.97143 -12.71709 -12.60169 -12.55954 -12.38825 -12.14379 -11.71625 -11.45884 -11.14868 -11.00293 -10.92147 -10.72970 -10.54170 -10.49081 -10.26240 -9.88297 -9.78984 -9.64292 -9.46317 -9.11187 -9.10919 -8.71085 -8.58715 -8.15573 -6.78678 -5.73904 -3.05104 0.73438 1.30836 2.05840 2.31267 3.08195 3.41276 3.47207 3.49162 3.52689 3.90393 3.96097 4.35639 4.49070 4.50856 4.70326 4.71636 4.86456 4.89187 4.96343 5.02332 5.19371 5.21403 5.28363 5.32702 5.36360 5.39245 5.44403 5.62422 5.87575 5.95402 6.02444 6.12707 6.19944 6.28851 6.34319 6.38321 6.50393 6.55957 6.68881 6.78735 6.80299 6.86979 6.92523 7.12377 7.28586 7.32836 7.54643 7.59211 7.67814 7.92860 8.00951 8.57134 9.07301 9.73920 10.68033 11.43338 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002228 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.835259 B =12563.850194 C =13131.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.512 6.512 4 N -0.555 5.555 5 C 0.064 3.936 6 C 0.166 3.834 7 C -0.172 4.172 8 C -0.037 4.037 9 C -0.153 4.153 10 C 0.557 3.443 11 O -0.548 6.548 12 N -0.712 5.712 13 C 0.176 3.824 14 H 0.076 0.924 15 C -0.147 4.147 16 C -0.162 4.162 17 C 0.127 3.873 18 N -0.604 5.604 19 C -0.212 4.212 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.157 3.843 28 C -0.060 4.060 29 C -0.177 4.177 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.397 0.603 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.252 0.748 46 H 0.023 0.977 47 H 0.077 0.923 48 H 0.132 0.868 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.537 -9.936 7.582 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.389 6.389 4 N -0.277 5.277 5 C -0.078 4.078 6 C 0.071 3.929 7 C -0.192 4.192 8 C -0.057 4.057 9 C -0.157 4.157 10 C 0.344 3.656 11 O -0.427 6.427 12 N -0.362 5.362 13 C 0.073 3.927 14 H 0.094 0.906 15 C -0.205 4.205 16 C -0.182 4.182 17 C 0.000 4.000 18 N -0.330 5.330 19 C -0.339 4.339 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.032 3.968 28 C -0.080 4.080 29 C -0.196 4.196 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.232 0.768 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.095 0.905 48 H 0.149 0.851 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -24.715 -10.058 7.326 27.670 hybrid contribution 0.466 0.448 -0.793 1.024 sum -24.248 -9.609 6.533 26.888 Atomic orbital electron populations 1.22017 0.90433 1.05692 1.05144 1.21101 0.91099 0.82457 0.75262 1.90400 1.68751 1.31720 1.48028 1.45412 1.05111 1.08111 1.69112 1.22127 0.97637 0.85043 1.03007 1.18186 0.81753 0.94975 0.98004 1.20748 0.94484 0.96306 1.07679 1.20999 0.92673 0.97964 0.94056 1.20107 0.93477 0.94477 1.07682 1.18145 0.86701 0.84080 0.76648 1.90741 1.70379 1.31207 1.50407 1.46096 1.08550 1.08565 1.73038 1.20577 0.77267 0.96171 0.98704 0.90570 1.22164 1.02886 0.99935 0.95512 1.23382 0.98078 0.96703 1.00014 1.22342 0.91732 0.97299 0.88642 1.45663 1.14267 1.67591 1.05517 1.18908 0.94297 1.32373 0.88311 0.90237 1.24727 0.97220 1.00765 0.97530 1.69813 1.20389 1.43662 1.22601 0.86113 0.80544 0.77154 0.82386 1.20521 1.21765 1.21900 1.22208 0.87828 0.92157 0.94646 1.21420 0.94229 0.97212 0.95096 1.22677 0.94242 1.00124 1.02521 0.88306 0.88320 0.89450 0.91162 0.89836 0.89477 0.85192 0.84387 0.76774 0.89633 0.95393 0.90500 0.91262 0.94036 0.94788 0.93815 0.95961 0.90518 0.85069 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 9.68 36.01 0.35 -0.27 16 2 C 0.51 4.28 7.72 -10.99 -0.08 4.20 16 3 O -0.51 -6.33 13.48 5.56 0.07 -6.25 16 4 N -0.55 -4.37 3.09 -120.82 -0.37 -4.74 16 5 C 0.06 0.21 9.52 59.85 0.57 0.78 16 6 C 0.17 1.80 6.49 -83.74 -0.54 1.25 16 7 C -0.17 -1.72 9.13 -39.46 -0.36 -2.08 16 8 C -0.04 -0.47 9.58 -39.23 -0.38 -0.84 16 9 C -0.15 -2.19 5.88 -104.95 -0.62 -2.81 16 10 C 0.56 9.55 7.73 -12.44 -0.10 9.45 16 11 O -0.55 -11.06 16.00 5.29 0.08 -10.98 16 12 N -0.71 -11.81 5.03 -54.83 -0.28 -12.09 16 13 C 0.18 3.30 2.76 -67.93 -0.19 3.11 16 14 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.15 -3.20 8.07 37.16 0.30 -2.90 16 16 C -0.16 -3.00 4.24 -89.97 -0.38 -3.38 16 17 C 0.13 2.58 7.85 -8.49 -0.07 2.51 16 18 N -0.60 -14.91 2.18 -184.57 -0.40 -15.31 16 19 C -0.21 -5.77 9.60 -15.06 -0.14 -5.91 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.51 11.50 55.49 0.64 -25.87 16 23 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.16 3.55 6.41 -8.36 -0.05 3.50 16 28 C -0.06 -0.78 9.53 -39.22 -0.37 -1.15 16 29 C -0.18 -2.23 9.02 -39.46 -0.36 -2.59 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.10 6.10 -51.93 -0.32 -0.21 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.09 6.18 -51.93 -0.32 -0.23 16 35 H 0.09 0.26 6.24 -51.93 -0.32 -0.06 16 36 H 0.13 0.88 6.24 -52.48 -0.33 0.56 16 37 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 38 H 0.40 5.81 6.62 -40.82 -0.27 5.54 16 39 H 0.08 2.02 5.95 -51.93 -0.31 1.71 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.87 6.33 -51.93 -0.33 1.55 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 1.89 5.72 -51.93 -0.30 1.60 16 48 H 0.13 1.52 6.39 -52.49 -0.34 1.19 16 49 H 0.19 2.49 4.51 -56.38 -0.25 2.24 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -34.94 387.60 -8.76 -43.70 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.80 Total: 5.95 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.52 Total: 2.61 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.41 Total: -58.02 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.16 Total: -17.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.94 -8.76 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970954524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.946 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds