Wall clock time and date at job start Wed Apr 1 2020 03:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99607 * 2 1 4 4 N 1.34770 * 120.00227 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99942 * 4.86764 * 4 2 1 6 6 C 1.39443 * 120.00371 * 184.86243 * 4 2 1 7 7 C 1.39126 * 119.92884 * 172.50416 * 6 4 2 8 8 C 1.37672 * 120.07345 * 179.97438 * 7 6 4 9 9 C 1.39743 * 119.92650 * 359.97438 * 8 7 6 10 10 C 1.47601 * 120.07628 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99230 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00103 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99986 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47090 * 325.00661 * 13 12 10 15 15 C 1.53001 * 109.47009 * 85.00491 * 13 12 10 16 16 C 1.53001 * 109.47308 * 205.00212 * 13 12 10 17 17 C 1.53503 * 114.20642 * 179.97438 * 16 13 12 18 18 N 1.47068 * 87.98171 * 87.72010 * 17 16 13 19 19 C 1.36942 * 136.05723 * 207.08922 * 18 17 16 20 20 H 1.08000 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99710 * 180.27252 * 19 18 17 22 22 N 1.31622 * 120.00432 * 359.72593 * 21 19 18 23 23 Si 1.86808 * 119.99817 * 179.71974 * 21 19 18 24 24 H 1.48505 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47071 * 119.99924 * 23 21 19 26 26 H 1.48497 * 109.47005 * 240.00137 * 23 21 19 27 27 C 1.47067 * 87.88728 * 27.34033 * 18 17 16 28 28 C 1.39759 * 119.85348 * 0.25180 * 9 8 7 29 29 C 1.37673 * 119.92048 * 359.49233 * 28 9 8 30 30 H 1.09000 * 109.47221 * 264.71397 * 1 2 3 31 31 H 1.09001 * 109.47005 * 24.72046 * 1 2 3 32 32 H 1.09002 * 109.46454 * 144.72083 * 1 2 3 33 33 H 1.09002 * 109.47397 * 274.99823 * 5 4 2 34 34 H 1.09001 * 109.47402 * 35.00352 * 5 4 2 35 35 H 1.08998 * 109.47377 * 155.00061 * 5 4 2 36 36 H 1.08004 * 119.96641 * 359.95302 * 7 6 4 37 37 H 1.08001 * 120.03843 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00351 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.47049 * 180.02562 * 15 13 12 40 40 H 1.09007 * 109.46991 * 299.99560 * 15 13 12 41 41 H 1.08996 * 109.47287 * 59.99678 * 15 13 12 42 42 H 1.08999 * 113.28302 * 46.93572 * 16 13 12 43 43 H 1.09000 * 113.46550 * 332.94142 * 17 16 13 44 44 H 1.09000 * 113.52052 * 202.50583 * 17 16 13 45 45 H 0.96997 * 120.00248 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.46381 * 87.43939 * 27 18 17 47 47 H 1.08997 * 113.46925 * 217.88112 * 27 18 17 48 48 H 1.07996 * 120.03326 * 179.74273 * 28 9 8 49 49 H 1.07998 * 119.95555 * 180.24879 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4524 -2.4336 -0.1066 6 6 3.5716 -1.1693 0.1029 7 6 4.2541 -2.3713 0.2604 8 6 5.6272 -2.3770 0.3613 9 6 6.3353 -1.1736 0.3047 10 6 7.8073 -1.1757 0.4130 11 8 8.4050 -2.2254 0.5521 12 7 8.4888 -0.0143 0.3577 13 6 9.9498 -0.0164 0.4658 14 1 10.2621 -0.8022 1.1537 15 6 10.5628 -0.2721 -0.9125 16 6 10.4243 1.3399 0.9914 17 6 11.9469 1.4566 1.1477 18 7 12.0050 1.8956 -0.2548 19 6 12.9294 1.8519 -1.2642 20 1 13.8959 1.4017 -1.0921 21 6 12.6263 2.3917 -2.5066 22 7 11.4486 2.9407 -2.7161 23 14 13.8902 2.3391 -3.8812 24 1 15.1247 1.6731 -3.3934 25 1 13.3393 1.5782 -5.0313 26 1 14.2111 3.7235 -4.3118 27 6 10.6358 2.4079 -0.0943 28 6 5.6462 0.0326 0.1511 29 6 4.2735 0.0306 0.0456 30 1 -0.3633 -0.0947 1.0233 31 1 -0.3633 0.9335 -0.4298 32 1 -0.3632 -0.8390 -0.5936 33 1 1.1191 -2.7459 0.8831 34 1 0.5874 -2.3014 -0.7564 35 1 2.1088 -3.1960 -0.5261 36 1 3.7063 -3.3011 0.3040 37 1 6.1564 -3.3104 0.4840 38 1 8.0119 0.8231 0.2471 39 1 11.6498 -0.2741 -0.8320 40 1 10.2247 -1.2384 -1.2870 41 1 10.2504 0.5136 -1.6005 42 1 9.8586 1.6891 1.8551 43 1 12.4397 0.5005 1.3240 44 1 12.2537 2.2258 1.8563 45 1 11.2367 3.3176 -3.5844 46 1 10.5961 3.4282 0.2871 47 1 10.0117 2.2622 -0.9759 48 1 6.1903 0.9646 0.1112 49 1 3.7408 0.9620 -0.0771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970954524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:22 Heat of formation + Delta-G solvation = 25.963450 kcal Electronic energy + Delta-G solvation = -29998.995831 eV Core-core repulsion = 25928.586389 eV Total energy + Delta-G solvation = -4070.409442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.01798 -41.27294 -40.17586 -38.90800 -36.80446 -35.92268 -34.17266 -32.62073 -32.16311 -31.02610 -29.71160 -29.44205 -28.01522 -26.42431 -26.04607 -24.88916 -23.44786 -23.14510 -21.56005 -20.74771 -20.35672 -18.90187 -18.59588 -18.38971 -17.92289 -17.04964 -17.03044 -16.85617 -16.42874 -16.02835 -15.79912 -15.65575 -15.36821 -15.15597 -14.72612 -14.51438 -14.48285 -14.41376 -13.98014 -13.67262 -13.61449 -13.48941 -13.41495 -13.10682 -12.98410 -12.92657 -12.79125 -12.69168 -12.56040 -12.36806 -12.32625 -12.03092 -11.70657 -11.49376 -11.27546 -11.13753 -10.85758 -10.74559 -10.36655 -10.06953 -10.03132 -9.00625 -8.78162 -7.84948 -5.15281 -0.24181 0.38441 1.37315 1.45094 1.46259 1.55029 1.76083 1.95488 2.18667 2.49551 2.89255 3.36908 3.46121 3.55179 3.70104 3.76097 3.84543 3.95418 4.00618 4.11672 4.27765 4.31669 4.38729 4.46087 4.49941 4.54469 4.57932 4.71883 4.73026 4.85269 4.86677 4.87928 4.99284 5.02938 5.08781 5.10705 5.13136 5.17690 5.25411 5.29189 5.37211 5.41125 5.52213 5.57765 5.66563 5.78134 5.99735 6.00505 6.23203 6.58504 6.96365 6.97512 7.22745 7.66636 8.67570 9.31993 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002228 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.835259 B =12563.850194 C =13131.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.560 6.560 4 N -0.554 5.554 5 C 0.052 3.948 6 C 0.171 3.829 7 C -0.160 4.160 8 C -0.042 4.042 9 C -0.178 4.178 10 C 0.557 3.443 11 O -0.583 6.583 12 N -0.708 5.708 13 C 0.185 3.815 14 H 0.078 0.922 15 C -0.129 4.129 16 C -0.131 4.131 17 C 0.126 3.874 18 N -0.630 5.630 19 C -0.212 4.212 20 H 0.080 0.920 21 C -0.061 4.061 22 N -0.945 5.945 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.297 1.297 26 H -0.295 1.295 27 C 0.156 3.844 28 C -0.061 4.061 29 C -0.197 4.197 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.407 0.593 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.244 0.756 46 H 0.018 0.982 47 H 0.050 0.950 48 H 0.135 0.865 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.073 -11.504 8.772 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.292 3.708 3 O -0.440 6.440 4 N -0.276 5.276 5 C -0.088 4.088 6 C 0.074 3.926 7 C -0.180 4.180 8 C -0.062 4.062 9 C -0.182 4.182 10 C 0.347 3.653 11 O -0.465 6.465 12 N -0.358 5.358 13 C 0.081 3.919 14 H 0.096 0.904 15 C -0.187 4.187 16 C -0.151 4.151 17 C 0.000 4.000 18 N -0.357 5.357 19 C -0.340 4.340 20 H 0.097 0.903 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.224 1.224 26 H -0.222 1.222 27 C 0.031 3.969 28 C -0.080 4.080 29 C -0.216 4.216 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.187 0.813 37 H 0.156 0.844 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.068 0.932 48 H 0.153 0.847 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -27.288 -11.647 8.548 30.876 hybrid contribution 1.118 0.884 -1.130 1.819 sum -26.170 -10.763 7.418 29.253 Atomic orbital electron populations 1.22067 0.86309 1.06962 1.06920 1.22111 0.93042 0.81780 0.73857 1.90379 1.70028 1.33511 1.50114 1.45728 1.03952 1.09874 1.68001 1.22539 0.98263 0.82942 1.05094 1.18386 0.83635 0.94493 0.96057 1.21031 0.93481 0.97543 1.05935 1.21151 0.93857 0.97257 0.93900 1.19934 0.91675 0.95794 1.10820 1.18584 0.87905 0.83372 0.75463 1.90709 1.71349 1.32275 1.52210 1.45964 1.07603 1.09243 1.72999 1.20331 0.78504 0.96373 0.96679 0.90356 1.21921 1.01598 0.98336 0.96840 1.23149 0.97617 0.94911 0.99421 1.22527 0.92867 0.97987 0.86607 1.45922 1.14677 1.67944 1.07122 1.19168 0.94609 1.31055 0.89212 0.90253 1.25408 0.98869 1.01523 0.99612 1.69977 1.21872 1.45056 1.22481 0.85197 0.79009 0.76673 0.79642 1.19232 1.22439 1.22244 1.22163 0.86759 0.93065 0.94954 1.21447 0.94591 0.97023 0.94971 1.22738 0.94149 1.00967 1.03756 0.86376 0.88567 0.86331 0.89067 0.87045 0.88918 0.81344 0.84390 0.75631 0.91624 0.96071 0.93487 0.87552 0.93216 0.92863 0.94639 0.96437 0.93191 0.84700 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.68 71.24 0.69 0.06 16 2 C 0.50 7.50 7.72 87.66 0.68 8.17 16 3 O -0.56 -13.87 13.48 -3.03 -0.04 -13.91 16 4 N -0.55 -7.29 3.09 -654.55 -2.02 -9.31 16 5 C 0.05 0.12 9.52 127.77 1.22 1.33 16 6 C 0.17 3.44 6.49 38.36 0.25 3.69 16 7 C -0.16 -2.84 9.13 22.35 0.20 -2.64 16 8 C -0.04 -1.02 9.58 22.50 0.22 -0.80 16 9 C -0.18 -5.12 5.88 -20.07 -0.12 -5.24 16 10 C 0.56 19.33 7.73 86.72 0.67 20.00 16 11 O -0.58 -23.86 16.00 -3.98 -0.06 -23.93 16 12 N -0.71 -23.61 5.03 -445.65 -2.24 -25.85 16 13 C 0.19 6.92 2.76 44.99 0.12 7.05 16 14 H 0.08 2.97 7.58 -2.39 -0.02 2.96 16 15 C -0.13 -5.77 8.07 71.98 0.58 -5.19 16 16 C -0.13 -4.71 4.24 -10.37 -0.04 -4.76 16 17 C 0.13 4.94 7.85 83.19 0.65 5.60 16 18 N -0.63 -31.32 2.18 -737.86 -1.61 -32.93 16 19 C -0.21 -11.71 9.60 84.03 0.81 -10.91 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 22 N -0.94 -56.34 11.50 21.65 0.25 -56.09 16 23 Si 0.96 46.55 29.55 68.60 2.03 48.57 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 27 C 0.16 7.13 6.41 83.27 0.53 7.66 16 28 C -0.06 -1.61 9.53 22.50 0.21 -1.40 16 29 C -0.20 -5.00 9.02 22.35 0.20 -4.79 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.05 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.12 -0.29 6.10 -2.39 -0.01 -0.31 16 33 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.11 -0.34 6.18 -2.39 -0.01 -0.36 16 35 H 0.09 0.15 6.24 -2.39 -0.01 0.13 16 36 H 0.17 1.61 6.24 -2.91 -0.02 1.60 16 37 H 0.14 3.30 7.64 -2.91 -0.02 3.28 16 38 H 0.41 12.01 6.62 -92.71 -0.61 11.40 16 39 H 0.06 3.17 5.95 -2.39 -0.01 3.16 16 40 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.05 2.38 6.33 -2.39 -0.02 2.37 16 42 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.05 1.88 8.12 -2.39 -0.02 1.86 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.05 2.56 5.72 -2.39 -0.01 2.54 16 48 H 0.14 3.26 6.39 -2.91 -0.02 3.24 16 49 H 0.18 4.93 4.51 -64.61 -0.29 4.64 16 Total: -1.00 -79.72 387.60 3.74 -75.98 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.10 Total: 22.61 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.34 Total: 14.86 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.62 Total: -124.18 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.10 Total: -37.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -79.72 3.74 -75.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970954524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.940 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds